Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:organic substance catabolic process
go back to main search page
Accession:GO:1901575 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of an organic substance, any molecular entity containing carbon.
Synonyms:exact_synonym: organic molecular entity breakdown;   organic molecular entity catabolic process;   organic molecular entity catabolism;   organic molecular entity degradation;   organic substance breakdown;   organic substance catabolism;   organic substance degradation


show annotations for term's descendants       view all columns           Sort by:
 
acetylcholine catabolic process in synaptic cleft term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Colq collagen like tail subunit of asymmetric acetylcholinesterase JBrowse link NW_004936473 2,877,543 2,941,374 RGD:9068941
AMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ampd3 adenosine monophosphate deaminase 3 JBrowse link NW_004936528 7,847,156 7,891,585 RGD:9068941
cellular lipid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mt3 metallothionein 3 JBrowse link NW_004936475 8,864,512 8,866,516 RGD:9068941
chitin catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chit1 chitinase 1 JBrowse link NW_004936567 1,373,727 1,385,694 RGD:9068941
cholesterol catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mt3 metallothionein 3 JBrowse link NW_004936475 8,864,512 8,866,516 RGD:9068941
DNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnase1l2 deoxyribonuclease 1 like 2 JBrowse link NW_004936694 1,808,184 1,810,735 RGD:9068941
DNA catabolic process, endonucleolytic term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dnase1l2 deoxyribonuclease 1 like 2 JBrowse link NW_004936694 1,808,184 1,810,735 RGD:9068941
ethanol catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adh7 alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide JBrowse link NW_004936520 3,467,003 3,489,754 RGD:9068941
glutathione catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chac1 ChaC glutathione specific gamma-glutamylcyclotransferase 1 JBrowse link NW_004936471 4,344,234 4,346,998 RGD:9068941
glycerophospholipid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pla2g4c phospholipase A2 group IVC JBrowse link NW_004936664 2,201,583 2,237,796 RGD:9068941
glycoprotein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo44 F-box protein 44 JBrowse link NW_004936474 526,191 531,825 RGD:9068941
lipid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ces3 carboxylesterase 3 JBrowse link NW_004936475 17,485,803 17,498,649 RGD:9068941
G Ces4a carboxylesterase 4A JBrowse link NW_004936475 17,506,499 17,521,225 RGD:9068941
G Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 JBrowse link NW_004936542 2,390,904 2,417,596 RGD:9068941
G Pla2g2a phospholipase A2 group IIA JBrowse link NW_004936474 6,091,978 6,095,961 RGD:9068941
mRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link NW_004936727 1,732,323 1,735,128 RGD:9068941
negative regulation of proteasomal protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G F8a1 coagulation factor VIII associated 1 JBrowse link NW_004936927 234,162 236,881 RGD:9068941
negative regulation of protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Trim40 tripartite motif containing 40 JBrowse link NW_004936723 897,213 909,263 RGD:9068941
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rpl32 ribosomal protein L32 JBrowse link NW_004936602 982,633 986,458 RGD:9068941
G Rpl36a ribosomal protein L36a JBrowse link NW_004936813 467,505 470,673 RGD:9068941
nucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp2 uridine phosphorylase 2 JBrowse link NW_004936469 20,465,767 20,513,084 RGD:9068941
phospholipid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pla2g4c phospholipase A2 group IVC JBrowse link NW_004936664 2,201,583 2,237,796 RGD:9068941
polysaccharide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chit1 chitinase 1 JBrowse link NW_004936567 1,373,727 1,385,694 RGD:9068941
positive regulation of fatty acid beta-oxidation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Twist1 twist family bHLH transcription factor 1 JBrowse link NW_004936546 5,331,220 5,332,669 RGD:9068941
positive regulation of lipid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sct secretin JBrowse link NW_004936888 459,168 459,919 RGD:9068941
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nanos3 nanos C2HC-type zinc finger 3 JBrowse link NW_004936659 2,590,291 2,593,482 RGD:9068941
positive regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link NW_004936727 1,732,323 1,735,128 RGD:9068941
proteasomal protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo44 F-box protein 44 JBrowse link NW_004936474 526,191 531,825 RGD:9068941
proteasome-mediated ubiquitin-dependent protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rnf187 ring finger protein 187 JBrowse link NW_004937135 64,950 70,083 RGD:9068941
G Trim2 tripartite motif containing 2 JBrowse link NW_004936576 88,163 202,944 RGD:9068941
protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vps25 vacuolar protein sorting 25 homolog JBrowse link NW_004936490 17,486,009 17,491,692 RGD:9068941
purine nucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G LOC101968893 cytosolic 5'-nucleotidase 1B JBrowse link NW_004936493 12,520,480 12,547,394 RGD:9068941
pyrimidine nucleoside catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Tymp thymidine phosphorylase JBrowse link NW_004936629 315,609 320,356 RGD:9068941
G Upp2 uridine phosphorylase 2 JBrowse link NW_004936469 20,465,767 20,513,084 RGD:9068941
regulation of glycolytic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Seh1l SEH1 like nucleoporin JBrowse link NW_004936626 2,538,655 2,562,468 RGD:9068941
regulation of mRNA stability term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hspa1a heat shock protein family A (Hsp70) member 1A JBrowse link NW_004936727 1,732,323 1,735,128 RGD:9068941
regulation of proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Wnt10b Wnt family member 10B JBrowse link NW_004936512 6,768,240 6,774,172 RGD:9068941
retinoic acid catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crabp1 cellular retinoic acid binding protein 1 JBrowse link NW_004936471 36,665,641 36,672,626 RGD:9068941
rRNA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Drosha drosha ribonuclease III JBrowse link NW_004936518 9,100,094 9,218,405 RGD:9068941
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo44 F-box protein 44 JBrowse link NW_004936474 526,191 531,825 RGD:9068941
tryptophan catabolic process to kynurenine term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Afmid arylformamidase JBrowse link NW_004936594 2,794,927 2,805,689 RGD:9068941
ubiquitin-dependent ERAD pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fbxo44 F-box protein 44 JBrowse link NW_004936474 526,191 531,825 RGD:9068941
ubiquitin-dependent protein catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ube2d4 ubiquitin conjugating enzyme E2 D4 (putative) JBrowse link NW_004936478 18,981,457 19,003,924 RGD:9068941
G Usp29 ubiquitin specific peptidase 29 JBrowse link NW_004936882 752,014 753,981 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 338
    metabolic process 225
      organic substance metabolic process 217
        organic substance catabolic process 34
          1,2-dichloroethane catabolic process 0
          2-nitropropane catabolic process 0
          S-adenosylmethionine catabolic process + 0
          Z-phenylacetaldoxime catabolic process 0
          acetylcholine catabolic process + 1
          aldehyde catabolic process + 0
          alkane catabolic process + 0
          alkene catabolic process + 0
          alkyne catabolic process + 0
          arugosin catabolic process 0
          austinol catabolic process 0
          betaine aldehyde catabolic process 0
          candicidin catabolic process 0
          carbohydrate catabolic process + 2
          carbohydrate derivative catabolic process + 5
          carbon tetrachloride catabolic process 0
          cyanide catabolic process 0
          dehydroaustinol catabolic process 0
          dimethylsulfoniopropionate catabolic process 0
          ether catabolic process + 0
          fatty acid derivative catabolic process + 0
          flavonoid catabolic process + 0
          halogenated hydrocarbon catabolic process + 0
          ketone catabolic process + 0
          lipid catabolic process + 9
          macromolecule catabolic process + 16
          organic acid catabolic process + 3
          organic cyclic compound catabolic process + 12
          organic hydroxy compound catabolic process + 2
          organomercury catabolic process + 0
          organonitrogen compound catabolic process + 17
          organophosphate catabolic process + 4
          organosilicon catabolic process + 0
          phosphinothricin catabolic process 0
          polyketide catabolic process + 0
          polyphosphate catabolic process 0
          thiocyanate catabolic process 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.