Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of mRNA catabolic process
go back to main search page
Accession:GO:1902373 term browser browse the term
Definition:Any process that stops, prevents or reduces the frequency, rate or extent of mRNA catabolic process.
Synonyms:exact_synonym: down regulation of mRNA breakdown;   down regulation of mRNA catabolic process;   down regulation of mRNA catabolism;   down regulation of mRNA degradation;   downregulation of mRNA breakdown;   downregulation of mRNA catabolic process;   downregulation of mRNA catabolism;   downregulation of mRNA degradation;   negative regulation of mRNA breakdown;   negative regulation of mRNA catabolism;   negative regulation of mRNA degradation
 narrow_synonym: inhibition of mRNA breakdown;   inhibition of mRNA catabolic process;   inhibition of mRNA catabolism;   inhibition of mRNA degradation
 related_synonym: down regulation of mRNA decay;   downregulation of mRNA decay;   inhibition of mRNA decay;   negative regulation of mRNA decay


show annotations for term's descendants           Sort by:
 
negative regulation of mRNA catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 IEA
ISO
GO_REF:0000107
(PMID:25225333)
Ensembl
RGD
PMID:25225333 GO_REF:0000107 NCBI chr  X:154,684,924...154,722,369
Ensembl chr  X:154,684,935...154,722,314
JBrowse link
G Pkp1 plakophilin 1 ISO (PMID:25225333) RGD PMID:25225333 NCBI chr13:52,705,174...52,753,089
Ensembl chr13:52,705,174...52,752,997
JBrowse link
G Pkp3 plakophilin 3 ISO (PMID:25225333) RGD PMID:25225333 NCBI chr 1:213,884,795...213,897,783
Ensembl chr 1:213,886,775...213,897,783
JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 ISO
IBA
(PMID:22547059)
PMID:21873635
RGD PMID:22547059, PMID:21873635 RGD:13792537 NCBI chr13:109,505,021...109,520,976
Ensembl chr13:109,505,697...109,520,419
JBrowse link
G Boll boule homolog, RNA binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:61,836,517...61,975,640
Ensembl chr 9:64,480,031...64,573,660
Ensembl chr 9:64,480,031...64,573,660
JBrowse link
G Dazl deleted in azoospermia-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:12,633,983...12,651,017
Ensembl chr 9:12,633,990...12,650,938
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISS
ISO
GO_REF:0000024
(MGI:MGI:6105829|PMID:27616329)
(PMID:14517288), (PMID:19029303), (PMID:26489465), (PMID:29180010)
UniProt
RGD
PMID:14517288, PMID:19029303, PMID:26489465, PMID:27616329, PMID:29180010 GO_REF:0000024, MGI:MGI:6105829 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO
ISS
(PMID:12034726)
GO_REF:0000024
RGD
UniProt
PMID:12034726 GO_REF:0000024 NCBI chr 5:130,001,387...130,144,557
Ensembl chr 5:130,001,372...130,085,838
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO (MGI:MGI:5306322|PMID:12456657) RGD PMID:12456657 MGI:MGI:5306322
G Hnrnpc heterogeneous nuclear ribonucleoprotein C ISO (PMID:16010978) RGD PMID:16010978 NCBI chr15:28,486,605...28,517,353
Ensembl chr15:28,486,617...28,517,353
JBrowse link
G LOC108348134 protein boule-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:64,447,890...64,573,812
Ensembl chr 9:64,480,031...64,573,660
JBrowse link
G LOC681410 hypothetical protein LOC681410 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:6,909,166...6,912,145
Ensembl chr17:6,909,728...6,910,630
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) RGD PMID:14517288, PMID:15014438, PMID:20932473 NCBI chr13:47,785,157...47,871,684
Ensembl chr13:47,785,161...47,831,110
JBrowse link
G Myd88 MYD88, innate immune signal transduction adaptor ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:128,022,512...128,027,462
Ensembl chr 8:128,022,473...128,026,841
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 IDA RGD PMID:11696543 RGD:10045987 NCBI chr 7:12,663,965...12,673,723
Ensembl chr 7:12,663,965...12,673,718
JBrowse link
G Rbm10 RNA binding motif protein 10 ISO
IEA
(MGI:MGI:4367529|PMID:19508861)
GO_REF:0000107
RGD
Ensembl
PMID:19508861 GO_REF:0000107, MGI:MGI:4367529 NCBI chr  X:1,754,869...1,786,973
Ensembl chr  X:1,754,861...1,786,978
JBrowse link
G Rbm38 RNA binding motif protein 38 ISO (PMID:17050675) RGD PMID:17050675 NCBI chr 3:171,037,891...171,050,500
Ensembl chr 3:171,037,957...171,050,475
JBrowse link
G Tardbp TAR DNA binding protein ISO (PMID:17481916) RGD PMID:17481916 NCBI chr 5:165,432,089...165,442,232
Ensembl chr 5:165,432,095...165,442,048
JBrowse link
G Tirap TIR domain containing adaptor protein ISO (PMID:15294994) RGD PMID:15294994 NCBI chr 8:36,382,029...36,399,625
Ensembl chr 8:36,385,353...36,388,224
JBrowse link
G Zfp36 zinc finger protein 36 ISO
ISS
(PMID:15014438)
GO_REF:0000024
RGD
UniProt
PMID:15014438 GO_REF:0000024 NCBI chr 1:85,380,088...85,382,565
Ensembl chr 1:85,380,088...85,382,569
JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 ISO (PMID:19029303) RGD PMID:19029303 NCBI chr13:70,885,503...70,922,278
Ensembl chr13:70,885,504...70,922,245
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:19029303)
Ensembl
RGD
PMID:19029303, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Igf2bp1 insulin-like growth factor 2 mRNA binding protein 1 ISO (PMID:19029303) RGD PMID:19029303 NCBI chr10:83,774,178...83,823,323
Ensembl chr10:83,780,203...83,822,996
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:19029303)
Ensembl
RGD
PMID:19029303, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 8:96,100,692...96,266,342
Ensembl chr 8:96,105,025...96,266,342
JBrowse link
G Ybx1 Y box binding protein 1 ISO
ISS
(PMID:19029303)
GO_REF:0000024
RGD
UniProt
PMID:19029303 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
mRNA stabilization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 ISO (MGI:MGI:3057047|PMID:15480992) RGD PMID:15480992 MGI:MGI:3057047 NCBI chr 4:155,386,367...155,414,034
Ensembl chr 4:155,386,711...155,401,480
JBrowse link
G Axin2 axin 2 ISO
IEA
(PMID:17072303)
GO_REF:0000107
RGD
Ensembl
PMID:17072303 GO_REF:0000107 NCBI chr10:97,212,483...97,238,824
Ensembl chr10:97,212,432...97,239,642
JBrowse link
G Cirbp cold inducible RNA binding protein ISO
ISS
(PMID:11574538)
GO_REF:0000024
RGD
UniProt
PMID:11574538 GO_REF:0000024 NCBI chr 7:12,400,066...12,405,054
Ensembl chr 7:12,401,207...12,405,022
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO MGI:MGI:3589208 (MGI:MGI:5439239|PMID:22844247) RGD PMID:22844247 MGI:MGI:5439239 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:29,608,588...29,611,212
Ensembl chr18:29,608,588...29,611,212
JBrowse link
G E2f1 E2F transcription factor 1 ISO (PMID:15766563) RGD PMID:15766563 NCBI chr 3:150,062,895...150,073,721
Ensembl chr 3:150,047,826...150,073,721
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 ISO (PMID:24335285), (PMID:32354837) RGD PMID:24335285, PMID:32354837 NCBI chr14:83,412,843...83,455,694
Ensembl chr14:83,412,968...83,455,456
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 ISO
ISS
(PMID:19029303), (PMID:21613615), (PMID:31358969)
(MGI:MGI:3037407|PMID:14976220), (MGI:MGI:5287957|PMID:21613615), (MGI:MGI:5559905|PMID:24394384), (MGI:MGI:5922838|PMID:27609837)
GO_REF:0000024
RGD
UniProt
PMID:14976220, PMID:19029303, PMID:21613615, PMID:24394384, PMID:27609837, PMID:31358969 GO_REF:0000024, MGI:MGI:3037407, MGI:MGI:5287957, MGI:MGI:5559905, MGI:MGI:5922838 NCBI chr12:2,461,502...2,502,432
Ensembl chr12:2,461,502...2,502,432
JBrowse link
G Fus FUS RNA binding protein ISO (PMID:27378374) RGD PMID:27378374 NCBI chr 1:199,412,805...199,426,705
Ensembl chr 1:199,412,834...199,426,702
JBrowse link
G Gdnf glial cell derived neurotrophic factor ISO
ISS
IEA
(PMID:12358785)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:12358785 GO_REF:0000024, GO_REF:0000107 NCBI chr 2:56,884,181...56,912,964
Ensembl chr 2:56,887,987...56,910,238
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D IDA RGD PMID:15192077 RGD:1357938 NCBI chr14:11,256,163...11,274,684
Ensembl chr14:11,256,268...11,274,578
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U ISO (PMID:17174306) RGD PMID:17174306 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator ISO (PMID:25940091), (PMID:28673543) RGD PMID:25940091, PMID:28673543 NCBI chr10:43,435,738...43,501,186
Ensembl chr10:43,446,526...43,498,066
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 ISO MGI:MGI:2179724 (MGI:MGI:2158083|PMID:11741878) RGD PMID:11741878 MGI:MGI:2158083 NCBI chr13:47,785,157...47,871,684
Ensembl chr13:47,785,161...47,831,110
JBrowse link
G Meioc meiosis specific with coiled-coil domain ISO
IBA
(MGI:MGI:5770021|PMID:26742488)
PMID:21873635
RGD PMID:26742488, PMID:21873635 MGI:MGI:5770021, RGD:13792537 NCBI chr10:90,622,954...90,641,883
Ensembl chr10:90,622,992...90,642,151
JBrowse link
G Mtor mechanistic target of rapamycin kinase IMP RGD PMID:21073857 RGD:10040969 NCBI chr 5:165,263,813...165,373,967
Ensembl chr 5:165,263,800...165,373,967
JBrowse link
G Noct nocturnin ISO
ISS
(MGI:MGI:5308514|PMID:22073225)
GO_REF:0000024
RGD
UniProt
PMID:22073225 GO_REF:0000024, MGI:MGI:5308514 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Qk quaking IMP RGD PMID:16855020 RGD:10045995 NCBI chr 1:50,983,647...51,050,692 JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:29104163) RGD PMID:29104163 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Rbm46 RNA binding motif protein 46 ISO (MGI:MGI:5644240|PMID:25397698) RGD PMID:25397698 MGI:MGI:5644240 NCBI chr 2:181,828,931...181,874,223
Ensembl chr 2:181,831,244...181,874,223
JBrowse link
G Slc11a1 solute carrier family 11 member 1 ISO
IEA
MGI:MGI:1857755 (MGI:MGI:85148|PMID:9009318)
GO_REF:0000107
RGD
Ensembl
PMID:9009318 GO_REF:0000107, MGI:MGI:85148 NCBI chr 9:81,655,590...81,666,697
Ensembl chr 9:81,655,629...81,666,706
JBrowse link
G Taf15 TATA-box binding protein associated factor 15 ISO (PMID:27378374) RGD PMID:27378374 NCBI chr10:70,689,863...70,721,892
Ensembl chr10:70,689,863...70,721,892
JBrowse link
G Tent5a terminal nucleotidyltransferase 5A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:92,935,474...92,942,267
Ensembl chr 8:92,937,739...92,942,076
JBrowse link
G Tent5b terminal nucleotidyltransferase 5B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:151,692,068...151,699,381
Ensembl chr 5:151,692,108...151,700,246
JBrowse link
G Tent5c terminal nucleotidyltransferase 5C ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:5926094|PMID:28931820)
(PMID:28931820)
UniProt
RGD
PMID:28931820, PMID:21873635 GO_REF:0000024, MGI:MGI:5926094, RGD:13792537 NCBI chr 2:202,797,766...202,816,562
Ensembl chr 2:202,798,198...202,816,562
JBrowse link
G Tent5d terminal nucleotidyltransferase 5D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,911,641...78,994,467
Ensembl chr  X:78,991,223...78,992,735
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 ISO
ISS
(PMID:18794151)
GO_REF:0000024
RGD
UniProt
PMID:18794151 GO_REF:0000024 NCBI chr 5:144,178,248...144,221,318
Ensembl chr 5:144,179,023...144,221,263
JBrowse link
G Vegfa vascular endothelial growth factor A IDA RGD PMID:12881220 RGD:1580563 NCBI chr 9:17,340,341...17,355,681
Ensembl chr 9:17,340,341...17,355,681
JBrowse link
G Vip vasoactive intestinal peptide ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 1:42,169,307...42,177,582
Ensembl chr 1:42,169,501...42,177,582
JBrowse link
G Ybx1 Y box binding protein 1 ISO
ISS
(PMID:31358969)
GO_REF:0000024
RGD
UniProt
PMID:31358969 GO_REF:0000024 NCBI chr 5:138,319,754...138,336,721
Ensembl chr 5:138,319,762...138,336,475
JBrowse link
G Ybx2 Y box binding protein 2 ISO MGI:MGI:3576937 (MGI:MGI:3696301|PMID:17035640) RGD PMID:17035640 MGI:MGI:3696301 NCBI chr10:56,546,689...56,552,339
Ensembl chr10:56,546,710...56,551,863
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 ISO
IEA
(PMID:28525753)
GO_REF:0000107
RGD
Ensembl
PMID:28525753 GO_REF:0000107 NCBI chr10:61,626,595...61,682,947
Ensembl chr10:61,626,597...61,672,136
JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx34 DExH-box helicase 34 ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 1:78,069,260...78,112,488
Ensembl chr 1:78,090,044...78,112,488
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex ISO (PMID:23828042) RGD PMID:23828042 NCBI chr 6:38,474,773...38,777,146
Ensembl chr 6:38,474,804...38,777,806
JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 ISO
ISS
(PMID:18447585)
GO_REF:0000024
RGD
UniProt
PMID:18447585 GO_REF:0000024 NCBI chr 7:75,409,581...75,421,874
Ensembl chr 7:75,409,581...75,422,268
JBrowse link
G Secisbp2 SECIS binding protein 2 ISO
IEA
MGI:MGI:4433050 (MGI:MGI:5582859|PMID:24274065)
GO_REF:0000107
RGD
Ensembl
PMID:24274065 GO_REF:0000107, MGI:MGI:5582859 NCBI chr17:13,555,348...13,586,595
Ensembl chr17:13,555,349...13,586,554
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:36,400,056...36,433,238
Ensembl chr 1:36,400,443...36,433,238
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link
G Tob1 transducer of ErbB-2.1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:18377426)
Ensembl
UniProt
RGD
PMID:18377426 GO_REF:0000024, GO_REF:0000107 NCBI chr10:81,913,689...81,915,727
Ensembl chr10:81,913,689...81,915,716
JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl4 ELAV like RNA binding protein 4 ISO
ISS
(PMID:18218628)
GO_REF:0000024
RGD
UniProt
PMID:18218628 GO_REF:0000024 NCBI chr 5:130,001,387...130,144,557
Ensembl chr 5:130,001,372...130,085,838
JBrowse link
G Rbm24 RNA binding motif protein 24 ISO (PMID:24356969) RGD PMID:24356969 NCBI chr17:18,671,037...18,682,876
Ensembl chr17:18,671,044...18,682,876
JBrowse link
G Tent4a terminal nucleotidyltransferase 4A ISO (PMID:30026317) RGD PMID:30026317 NCBI chr 1:36,400,056...36,433,238
Ensembl chr 1:36,400,443...36,433,238
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B ISO (PMID:30026317) RGD PMID:30026317 NCBI chr19:19,771,289...19,834,759
Ensembl chr19:19,771,677...19,832,812
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      positive regulation of metabolic process 4083
        positive regulation of macromolecule metabolic process 3765
          positive regulation of gene expression 2524
            negative regulation of mRNA catabolic process 60
              mRNA stabilization + 52
              negative regulation of mitochondrial mRNA catabolic process 0
              negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 3
              negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
Path 2
Term Annotations click to browse term
  biological_process 20014
    metabolic process 12256
      cellular metabolic process 11065
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleic acid metabolic process 4980
              RNA metabolic process 4470
                RNA catabolic process 266
                  mRNA catabolic process 230
                    regulation of mRNA catabolic process 132
                      negative regulation of mRNA catabolic process 60
                        mRNA stabilization + 52
                        negative regulation of mitochondrial mRNA catabolic process 0
                        negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay + 3
                        negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 4
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.