Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:secondary alcohol biosynthetic process
go back to main search page
Accession:GO:1902653 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of secondary alcohol.
Synonyms:exact_synonym: secondary alcohol anabolism;   secondary alcohol biosynthesis;   secondary alcohol formation;   secondary alcohol synthesis


show annotations for term's descendants       view all columns           Sort by:
 
cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat2 acetyl-CoA acetyltransferase 2 JBrowse link 1 47,972,399 47,992,654 RGD:2326086
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:1624291
RGD:13792537
G Apoa4 apolipoprotein A4 JBrowse link 8 50,536,983 50,539,371 RGD:13792537
G Apoa5 apolipoprotein A5 JBrowse link 8 50,559,079 50,561,720 RGD:13792537
G Ces1d carboxylesterase 1D JBrowse link 19 15,195,514 15,239,827 RGD:1624291
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:1624291
RGD:1600115
G Cyb5r3 cytochrome b5 reductase 3 JBrowse link 7 124,024,003 124,041,564 RGD:1600115
G Dhcr24 24-dehydrocholesterol reductase JBrowse link 5 126,164,708 126,188,926 RGD:1624291
RGD:1600115
G Dhcr7 7-dehydrocholesterol reductase JBrowse link 1 217,018,916 217,034,890 RGD:625561
RGD:13792537
RGD:1624291
RGD:1600115
RGD:2316918
RGD:2316916
RGD:632010
G Ebp EBP, cholestenol delta-isomerase JBrowse link X 15,049,394 15,055,782 RGD:628445
RGD:13792537
RGD:1624291
RGD:1600115
G Fdft1 farnesyl diphosphate farnesyl transferase 1 JBrowse link 15 46,339,248 46,367,302 RGD:728402
RGD:13792537
RGD:1626611
G Fdps farnesyl diphosphate synthase JBrowse link 2 188,403,595 188,413,219 RGD:728501
G G6pd glucose-6-phosphate dehydrogenase JBrowse link X 156,274,800 156,293,935 RGD:1624291
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:1300058
RGD:1624291
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 JBrowse link 2 52,427,351 52,445,082 RGD:1600115
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 JBrowse link 2 200,452,623 200,480,785 RGD:1600115
G Hsd17b7 hydroxysteroid (17-beta) dehydrogenase 7 JBrowse link 13 88,288,116 88,308,019 RGD:1624291
RGD:13792537
RGD:1600115
G Idi1 isopentenyl-diphosphate delta isomerase 1 JBrowse link 17 57,976,266 57,984,036 RGD:729078
G Insig1 insulin induced gene 1 JBrowse link 4 342,302 350,515 RGD:1624291
G Insig2 insulin induced gene 2 JBrowse link 13 37,264,818 37,292,718 RGD:1624291
G Lbr lamin B receptor JBrowse link 13 100,431,390 100,450,209 RGD:1600115
RGD:1624291
G Lss lanosterol synthase JBrowse link 20 12,844,522 12,870,474 RGD:1626611
RGD:13792537
RGD:1600115
RGD:1624291
RGD:2316919
G Mvd mevalonate diphosphate decarboxylase JBrowse link 19 55,258,910 55,268,933 RGD:729305
RGD:1600115
G Mvk mevalonate kinase JBrowse link 12 47,904,266 47,920,457 RGD:728935
RGD:1600115
RGD:13792537
RGD:1624291
G Npc1l1 NPC1 like intracellular cholesterol transporter 1 JBrowse link 14 86,345,946 86,560,694 RGD:1624291
G Nsdhl NAD(P) dependent steroid dehydrogenase-like JBrowse link X 152,933,118 152,964,399 RGD:1600115
G Pmvk phosphomevalonate kinase JBrowse link 2 188,784,329 188,793,890 RGD:8553625
RGD:13792537
RGD:1624291
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:1600115
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:1600115
G Tm7sf2 transmembrane 7 superfamily member 2 JBrowse link 1 221,426,017 221,430,340 RGD:13825441
RGD:1624291
cholesterol biosynthetic process via 24,25-dihydrolanosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp51 cytochrome P450, family 51 JBrowse link 4 27,175,564 27,194,018 RGD:2316902
RGD:13792537
cholesterol biosynthetic process via lathosterol term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sc5d sterol-C5-desaturase JBrowse link 8 46,525,406 46,537,014 RGD:2316911
RGD:13792537
ergosterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 1 256,382,861 256,386,729 RGD:13792537
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 JBrowse link 4 116,261,796 116,278,615 RGD:13792537
G Cyp26c1 cytochrome P450, family 26, subfamily C, polypeptide 1 JBrowse link 1 256,369,410 256,380,649 RGD:13792537
negative regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apoe apolipoprotein E JBrowse link 1 80,612,894 80,616,820 RGD:1624291
RGD:1600115
RGD:10059686
G Erlin1 ER lipid raft associated 1 JBrowse link 1 263,810,439 263,845,762 RGD:1624291
G Erlin2 ER lipid raft associated 2 JBrowse link 16 69,179,005 69,195,452 RGD:1624291
G Idi2 isopentenyl-diphosphate delta isomerase 2 JBrowse link 17 63,107,152 63,107,469 RGD:1624291
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:1624291
RGD:1600115
positive regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcg1 ATP binding cassette subfamily G member 1 JBrowse link 20 9,743,269 9,842,735 RGD:1624291
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 JBrowse link 5 19,358,734 19,368,431 RGD:13792517
G Fdps farnesyl diphosphate synthase JBrowse link 2 188,403,595 188,413,219 RGD:2316295
G Fgf1 fibroblast growth factor 1 JBrowse link 18 32,273,830 32,359,831 RGD:1624291
RGD:1600115
G Por cytochrome p450 oxidoreductase JBrowse link 12 23,998,411 24,017,063 RGD:2316785
G Scp2 sterol carrier protein 2 JBrowse link 5 127,647,934 127,735,703 RGD:9850260
G Sec14l2 SEC14-like lipid binding 2 JBrowse link 14 84,335,594 84,360,354 RGD:727312
G Srebf1 sterol regulatory element binding transcription factor 1 JBrowse link 10 46,570,996 46,593,021 RGD:1624291
regulation of cholesterol biosynthetic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abca2 ATP binding cassette subfamily A member 2 JBrowse link 3 2,648,787 2,668,770 RGD:1624291
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:1624291
G Cyp51 cytochrome P450, family 51 JBrowse link 4 27,175,564 27,194,018 RGD:1298863
G Dhcr7 7-dehydrocholesterol reductase JBrowse link 1 217,018,916 217,034,890 RGD:632010
G Mvk mevalonate kinase JBrowse link 12 47,904,266 47,920,457 RGD:728935
G Pex2 peroxisomal biogenesis factor 2 JBrowse link 2 98,251,756 98,269,185 RGD:1624291
G Scap SREBF chaperone JBrowse link 8 118,551,869 118,628,650 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      small molecule metabolic process 1788
        alcohol metabolic process 354
          secondary alcohol metabolic process 140
            secondary alcohol biosynthetic process 51
              (17Z)-protosta-17(20),24-dien-3beta-ol biosynthetic process 0
              1,3-dichloro-2-propanol biosynthetic process 0
              2-hydroxy-but-3-enyl glucosinolate biosynthetic process 0
              acetoin biosynthetic process 0
              asperfuranone biosynthetic process + 0
              butanediol biosynthetic process 0
              cholesterol biosynthetic process + 48
              ecdysone biosynthetic process 0
              ergosterol biosynthetic process + 3
              menthol biosynthetic process 0
              propan-2-ol biosynthetic process 0
              vitamin D3 biosynthetic process 0
              zymosterol biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19439
    metabolic process 11638
      biosynthetic process 5985
        organic substance biosynthetic process 5871
          organic hydroxy compound biosynthetic process 238
            alcohol biosynthetic process 153
              secondary alcohol biosynthetic process 51
                (17Z)-protosta-17(20),24-dien-3beta-ol biosynthetic process 0
                1,3-dichloro-2-propanol biosynthetic process 0
                2-hydroxy-but-3-enyl glucosinolate biosynthetic process 0
                acetoin biosynthetic process 0
                asperfuranone biosynthetic process + 0
                butanediol biosynthetic process 0
                cholesterol biosynthetic process + 48
                ecdysone biosynthetic process 0
                ergosterol biosynthetic process + 3
                menthol biosynthetic process 0
                propan-2-ol biosynthetic process 0
                vitamin D3 biosynthetic process 0
                zymosterol biosynthetic process 0
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.