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ONTOLOGY REPORT - ANNOTATIONS


Term:positive regulation of pri-miRNA transcription by RNA polymerase II
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Accession:GO:1902895 term browser browse the term
Definition:Any process that activates or increases the frequency, rate or extent of pri-miRNA transcription mediated by RNA polymerase II.
Synonyms:exact_synonym: positive regulation of pri-miRNA transcription from RNA polymerase II promoter;   up regulation of pri-miRNA transcription from RNA polymerase II promoter;   upregulation of pri-miRNA transcription from RNA polymerase II promoter
 narrow_synonym: activation of pri-miRNA transcription from RNA polymerase II promoter


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positive regulation of pri-miRNA transcription by RNA polymerase II term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apln apelin ISO (PMID:23263626) RGD PMID:23263626 NCBI chr  X:134,856,719...134,866,210
Ensembl chr  X:134,856,726...134,866,210
JBrowse link
G Atoh8 atonal bHLH transcription factor 8 ISO UniProtKB:P23769 (PMID:27780851) RGD PMID:27780851 NCBI chr 4:100,067,341...100,099,517
Ensembl chr 4:100,067,341...100,099,517
JBrowse link
G Bmp2 bone morphogenetic protein 2 ISO
IEA
UniProtKB:P21275 (MGI:MGI:4939577|PMID:21145505)
GO_REF:0000107
RGD
Ensembl
PMID:21145505 GO_REF:0000107, MGI:MGI:4939577 NCBI chr 3:126,335,963...126,346,771
Ensembl chr 3:126,335,863...126,346,318
JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO
IEA
UniProtKB:P21274 (MGI:MGI:4939577|PMID:21145505)
GO_REF:0000107
RGD
Ensembl
PMID:21145505 GO_REF:0000107, MGI:MGI:4939577 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A ISO (MGI:MGI:4939577|PMID:21145505) RGD PMID:21145505 MGI:MGI:4939577 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
G Ctcf CCCTC-binding factor IMP PMID:27124358 BHF-UCL PMID:27124358 RGD:11344932 NCBI chr19:37,600,151...37,649,674
Ensembl chr19:37,600,148...37,649,673
JBrowse link
G Egr1 early growth response 1 ISO
IEA
(PMID:19307576)
GO_REF:0000107
RGD
Ensembl
PMID:19307576 GO_REF:0000107 NCBI chr18:27,657,903...27,660,101
Ensembl chr18:27,657,628...27,661,429
JBrowse link
G Ets1 ETS proto-oncogene 1, transcription factor ISO (PMID:21711453) RGD PMID:21711453 NCBI chr 8:33,756,634...33,879,625
Ensembl chr 8:33,816,386...33,879,625
JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IDA PMID:18384814 BHF-UCL PMID:18384814 RGD:10402042 NCBI chr 6:109,300,433...109,303,299
Ensembl chr 6:109,300,433...109,303,299
JBrowse link
G Fosl1 FOS like 1, AP-1 transcription factor subunit ISO (PMID:21673316) RGD PMID:21673316 NCBI chr 1:220,826,560...220,835,066
Ensembl chr 1:220,826,560...220,835,066
JBrowse link
G Foxo3 forkhead box O3 ISO (MGI:MGI:4881905|PMID:19933931) RGD PMID:19933931 MGI:MGI:4881905 NCBI chr20:46,428,078...46,519,156
Ensembl chr20:46,428,124...46,519,144
JBrowse link
G Gata2 GATA binding protein 2 ISO
IBA
UniProtKB:Q96SQ7 (PMID:27780851)
PMID:21873635
RGD PMID:27780851, PMID:21873635 RGD:13792537 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Gata3 GATA binding protein 3 ISO (PMID:26451614) RGD PMID:26451614 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681
JBrowse link
G Gnl3 G protein nucleolar 3 ISO (PMID:25569094) RGD PMID:25569094 NCBI chr16:7,097,580...7,103,518
Ensembl chr16:7,097,507...7,103,604
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO
GO_REF:0000107
(PMID:19141645), (PMID:19782034), (PMID:24983504)
Ensembl
RGD
PMID:19141645, PMID:19782034, PMID:24983504 GO_REF:0000107 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Il10 interleukin 10 ISO (MGI:MGI:6201792|PMID:23071313) RGD PMID:23071313 MGI:MGI:6201792 NCBI chr13:47,738,933...47,743,392
Ensembl chr13:47,739,526...47,743,392
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit IDA
ISO
PMID:18384814
(PMID:19962668), (PMID:24375836)
RGD PMID:19962668, PMID:24375836, PMID:18384814 RGD:10402042 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Klf4 Kruppel like factor 4 ISO (PMID:23867820) RGD PMID:23867820 NCBI chr 5:72,283,311...72,287,669
Ensembl chr 5:72,283,313...72,287,669
JBrowse link
G Klf5 Kruppel-like factor 5 ISO (PMID:28408180) RGD PMID:28408180 NCBI chr15:83,703,796...83,722,921
Ensembl chr15:83,703,791...83,722,921
JBrowse link
G Nfkb1 nuclear factor kappa B subunit 1 IMP PMID:24676391 BHF-UCL PMID:24676391 RGD:10400879 NCBI chr 2:240,773,520...240,890,053
Ensembl chr 2:240,773,456...240,866,689
JBrowse link
G Ngfr nerve growth factor receptor IEA
ISO
GO_REF:0000107
(PMID:26268439)
Ensembl
RGD
PMID:26268439 GO_REF:0000107 NCBI chr10:83,389,828...83,408,061
Ensembl chr10:83,389,847...83,408,061
JBrowse link
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 ISO (MGI:MGI:5616008|PMID:25510864)
(PMID:27334923)
RGD PMID:25510864, PMID:27334923 MGI:MGI:5616008 NCBI chr18:31,728,373...32,704,022
Ensembl chr18:31,728,373...31,749,647
JBrowse link
G Pdgfb platelet derived growth factor subunit B ISO
IEA
(PMID:19088079)
GO_REF:0000107
RGD
Ensembl
PMID:19088079 GO_REF:0000107 NCBI chr 7:121,215,458...121,233,092
Ensembl chr 7:121,214,628...121,232,741
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO (PMID:28566713) RGD PMID:28566713 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Prl prolactin ISO (PMID:23619365) RGD PMID:23619365 NCBI chr17:39,814,236...39,824,299
Ensembl chr17:39,814,244...39,824,299
JBrowse link
G Rela RELA proto-oncogene, NF-kB subunit IMP
ISO
PMID:20546595
(PMID:23619365), (PMID:26268439)
PMID:28484848
RGD PMID:23619365, PMID:26268439, PMID:20546595, PMID:28484848 RGD:12903243, RGD:13601996 NCBI chr 1:220,992,770...221,003,249
Ensembl chr 1:220,992,770...221,003,249
JBrowse link
G Smad1 SMAD family member 1 ISO
IEA
(MGI:MGI:4939577|PMID:21145505)
GO_REF:0000107
RGD
Ensembl
PMID:21145505 GO_REF:0000107, MGI:MGI:4939577 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad3 SMAD family member 3 ISO (PMID:26311719) RGD PMID:26311719 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
(MGI:MGI:6094665|PMID:23426367)
GO_REF:0000107
RGD
Ensembl
PMID:23426367 GO_REF:0000107, MGI:MGI:6094665 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smad6 SMAD family member 6 ISO (MGI:MGI:4939577|PMID:21145505) RGD PMID:21145505 MGI:MGI:4939577 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO
IEA
(PMID:25569094)
GO_REF:0000107
RGD
Ensembl
PMID:25569094 GO_REF:0000107 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468
JBrowse link
G Spi1 Spi-1 proto-oncogene ISO (MGI:MGI:5693226|PMID:18384814)
(PMID:20972335)
RGD PMID:18384814, PMID:20972335 MGI:MGI:5693226 NCBI chr 3:79,918,127...79,937,708
Ensembl chr 3:79,918,969...79,938,301
JBrowse link
G Srebf1 sterol regulatory element binding transcription factor 1 ISO
IBA
(PMID:24296663)
PMID:21873635
(MGI:MGI:5501359|PMID:23823476)
RGD PMID:23823476, PMID:24296663, PMID:21873635 MGI:MGI:5501359, RGD:13792537 NCBI chr10:46,570,996...46,593,021
Ensembl chr10:46,570,996...46,593,009
JBrowse link
G Srebf2 sterol regulatory element binding transcription factor 2 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5501359|PMID:23823476)
Ensembl
RGD
PMID:23823476, PMID:21873635 GO_REF:0000107, MGI:MGI:5501359, RGD:13792537 NCBI chr 7:123,381,082...123,438,605
Ensembl chr 7:123,381,077...123,438,603
JBrowse link
G Srf serum response factor ISO (MGI:MGI:4354665|PMID:19578358), (MGI:MGI:5688838|PMID:21303526) RGD PMID:19578358, PMID:21303526 MGI:MGI:4354665, MGI:MGI:5688838 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (MGI:MGI:5897552|PMID:20546595)
(PMID:19390056), (PMID:23820254)
RGD PMID:19390056, PMID:20546595, PMID:23820254 MGI:MGI:5897552 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Tead1 TEA domain transcription factor 1 ISO (PMID:26045994) RGD PMID:26045994 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Tert telomerase reverse transcriptase ISO (PMID:25569094) RGD PMID:25569094 NCBI chr 1:32,250,876...32,275,330
Ensembl chr 1:32,251,714...32,272,476
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO (PMID:26311719), (PMID:26493107) RGD PMID:26311719, PMID:26493107 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO
IEA
(PMID:25217442)
GO_REF:0000107
RGD
Ensembl
PMID:25217442 GO_REF:0000107 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 IMP PMID:21704009 BHF-UCL PMID:21704009 RGD:12792988 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Tnf tumor necrosis factor ISO (PMID:22499991) RGD PMID:22499991 NCBI chr20:5,189,382...5,192,000
Ensembl chr20:5,189,390...5,192,000
JBrowse link
G Tp53 tumor protein p53 ISO UniProtKB:P01375 (PMID:20546595), (PMID:22499991) RGD PMID:20546595, PMID:22499991 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Wt1 WT1 transcription factor ISO
IEA
(PMID:23042785)
GO_REF:0000107
RGD
Ensembl
PMID:23042785 GO_REF:0000107 NCBI chr 3:95,133,221...95,180,574
Ensembl chr 3:95,133,713...95,180,564
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      positive regulation of metabolic process 4067
        positive regulation of macromolecule metabolic process 3769
          positive regulation of gene expression 2526
            positive regulation of transcription, DNA-templated 1696
              positive regulation of transcription by RNA polymerase II 1392
                positive regulation of pri-miRNA transcription by RNA polymerase II 44
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleic acid metabolic process 4985
              RNA metabolic process 4469
                RNA biosynthetic process 3477
                  nucleic acid-templated transcription 3463
                    regulation of nucleic acid-templated transcription 3336
                      regulation of transcription, DNA-templated 3287
                        regulation of transcription by RNA polymerase II 2417
                          regulation of pri-miRNA transcription by RNA polymerase II 58
                            positive regulation of pri-miRNA transcription by RNA polymerase II 44
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.