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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of protein polyubiquitination
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Accession:GO:1902914 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of protein polyubiquitination.
Synonyms:exact_synonym: regulation of protein polyubiquitinylation;   regulation of protein polyubiquitylation
 related_synonym: regulation of polyubiquitin


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regulation of protein polyubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf2 forkhead box F2 ISO (PMID:29374064) RGD PMID:29374064 NCBI chr17:34,150,417...34,156,450 JBrowse link
negative regulation of histone H2A K63-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 ISO
IBA
ISS
(PMID:20725033)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:20725033, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:222,451,674...222,459,952
Ensembl chr 1:222,451,674...222,459,952
JBrowse link
G Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:127,282,445...127,301,086
Ensembl chr 6:127,282,466...127,301,083
JBrowse link
G Trip12 thyroid hormone receptor interactor 12 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:22884692)
Ensembl
UniProt
RGD
PMID:22884692, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 9:92,305,059...92,435,388
Ensembl chr 9:92,305,051...92,435,365
JBrowse link
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:22884692)
Ensembl
UniProt
RGD
PMID:22884692, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 7:76,789,110...76,835,517
NCBI chr 7:76,839,661...76,907,441
Ensembl chr 7:76,789,531...76,853,840
JBrowse link
negative regulation of protein K48-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ppia peptidylprolyl isomerase A ISO
ISS
(PMID:30328013)
GO_REF:0000024
RGD
UniProt
PMID:30328013 GO_REF:0000024 NCBI chr14:86,673,775...86,677,443
Ensembl chr14:86,673,775...86,677,443
JBrowse link
G Ppial4d peptidylprolyl isomerase A (cyclophilin A)-like 4D ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:22,706,906...22,707,648
Ensembl chr14:22,706,901...22,707,668
JBrowse link
G Trim44 tripartite motif-containing 44 ISO
IEA
(PMID:23460740)
GO_REF:0000107
RGD
Ensembl
PMID:23460740 GO_REF:0000107 NCBI chr 3:91,968,781...92,242,138
Ensembl chr 3:92,183,556...92,242,318
JBrowse link
negative regulation of protein K63-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gps2 G protein pathway suppressor 2 ISO (MGI:MGI:5896692|PMID:28039360), (MGI:MGI:6148392|PMID:24953653), (MGI:MGI:6148396|PMID:29499132), (MGI:MGI:6148454|PMID:22424771) RGD PMID:22424771, PMID:24953653, PMID:28039360, PMID:29499132 MGI:MGI:5896692, MGI:MGI:6148392, MGI:MGI:6148396, MGI:MGI:6148454 NCBI chr10:56,524,327...56,527,447
Ensembl chr10:56,524,468...56,526,987
JBrowse link
G Parp10 poly (ADP-ribose) polymerase family, member 10 ISO (PMID:23575687) RGD PMID:23575687 NCBI chr 7:117,291,592...117,300,878
Ensembl chr 7:117,291,877...117,300,662
JBrowse link
G Plaa phospholipase A2, activating protein ISO
ISS
(MGI:MGI:5883825|PMID:28413018)
GO_REF:0000024
RGD
UniProt
PMID:28413018 GO_REF:0000024, MGI:MGI:5883825 NCBI chr 5:113,548,913...113,578,928
Ensembl chr 5:113,548,913...113,578,928
JBrowse link
negative regulation of protein polyubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dysf dysferlin ISO (MGI:MGI:5433472|PMID:20724702) RGD PMID:20724702 MGI:MGI:5433472 NCBI chr 4:115,700,942...115,901,873
Ensembl chr 4:115,712,850...115,901,873
JBrowse link
G Ttc36 tetratricopeptide repeat domain 36 ISO MGI:MGI:5588394 (MGI:MGI:6362140|PMID:31537781) RGD PMID:31537781 MGI:MGI:6362140 NCBI chr 8:49,106,374...49,109,981
Ensembl chr 8:49,106,374...49,109,981
JBrowse link
positive regulation of protein K48-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc2 baculoviral IAP repeat-containing 2 ISO (PMID:21931591) RGD PMID:21931591 NCBI chr 8:6,014,014...6,036,668
Ensembl chr 8:6,013,207...6,034,142
JBrowse link
G Nmi N-myc (and STAT) interactor ISO (MGI:MGI:5546557|PMID:23956435) RGD PMID:23956435 MGI:MGI:5546557 NCBI chr 3:37,458,891...37,480,984
Ensembl chr 3:37,458,890...37,480,984
JBrowse link
positive regulation of protein K63-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc2 baculoviral IAP repeat-containing 2 ISO (PMID:21931591) RGD PMID:21931591 NCBI chr 8:6,014,014...6,036,668
Ensembl chr 8:6,013,207...6,034,142
JBrowse link
G Ddx3x DEAD-box helicase 3, X-linked ISO (PMID:27980081) RGD PMID:27980081 NCBI chr  X:10,400,363...10,414,010
Ensembl chr  X:10,400,366...10,413,995
JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 ISO (PMID:25891078) RGD PMID:25891078 NCBI chr19:19,342,061...19,389,366
Ensembl chr19:19,332,594...19,377,492
JBrowse link
G Ptpn22 protein tyrosine phosphatase, non-receptor type 22 ISO
IBA
(PMID:23871208)
PMID:21873635
(MGI:MGI:5562517|PMID:23871208)
RGD PMID:23871208, PMID:21873635 MGI:MGI:5562517, RGD:13792537 NCBI chr 2:206,342,066...206,390,348
Ensembl chr 2:206,342,066...206,390,348
JBrowse link
positive regulation of protein linear polyubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prkn parkin RBR E3 ubiquitin protein ligase ISO UniProtKB:Q96EP0|UniProtKB:Q9BYM8 (PMID:23453807)
(MGI:MGI:5495588|PMID:23453807)
RGD PMID:23453807 MGI:MGI:5495588 NCBI chr 1:48,880,015...50,069,998 JBrowse link
G Xiap X-linked inhibitor of apoptosis ISO
IEA
(PMID:21931591)
GO_REF:0000107
RGD
Ensembl
PMID:21931591 GO_REF:0000107 NCBI chr  X:128,409,425...128,455,786
Ensembl chr  X:128,409,472...128,453,000
JBrowse link
positive regulation of protein polyubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Birc2 baculoviral IAP repeat-containing 2 ISO MGI:MGI:1197007|MGI:MGI:2384911 (MGI:MGI:3819901|PMID:18621737) RGD PMID:18621737 MGI:MGI:3819901 NCBI chr 8:6,014,014...6,036,668
Ensembl chr 8:6,013,207...6,034,142
JBrowse link
G Birc3 baculoviral IAP repeat-containing 3 ISO MGI:MGI:1197009 (MGI:MGI:3819901|PMID:18621737) RGD PMID:18621737 MGI:MGI:3819901 NCBI chr 8:6,048,590...6,076,828
Ensembl chr 8:6,048,969...6,076,598
JBrowse link
G Fbxo4 F-box protein 4 ISO MGI:MGI:5301830 (MGI:MGI:5299398|PMID:21911473) RGD PMID:21911473 MGI:MGI:5299398 NCBI chr 2:53,797,954...53,811,134
Ensembl chr 2:53,797,954...53,811,134
JBrowse link
G Hamp hepcidin antimicrobial peptide ISO (PMID:22682227) RGD PMID:22682227 NCBI chr 1:89,368,021...89,369,960
Ensembl chr 1:89,368,021...89,369,960
JBrowse link
G Marchf7 membrane associated ring-CH-type finger 7 ISO
ISS
(PMID:29295817)
GO_REF:0000024
RGD
UniProt
PMID:29295817 GO_REF:0000024 NCBI chr 3:46,284,961...46,325,230
Ensembl chr 3:46,286,712...46,324,057
JBrowse link
G Rnf40 ring finger protein 40 IDA RGD PMID:12121982 RGD:633892 NCBI chr 1:199,037,472...199,052,823
Ensembl chr 1:199,037,544...199,052,172
JBrowse link
G Skp2 S-phase kinase associated protein 2 ISO (MGI:MGI:5468878|PMID:23277542) RGD PMID:23277542 MGI:MGI:5468878 NCBI chr 2:58,506,146...58,534,211
Ensembl chr 2:58,506,151...58,534,211
JBrowse link
G Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 ISO (PMID:28931592) RGD PMID:28931592 NCBI chr 8:104,840,939...104,912,959
Ensembl chr 8:104,840,940...104,912,959
JBrowse link
G Ube2d1 ubiquitin-conjugating enzyme E2D 1 ISO MGI:MGI:1197009 (MGI:MGI:3819901|PMID:18621737) RGD PMID:18621737 MGI:MGI:3819901 NCBI chr20:18,547,370...18,580,291
Ensembl chr20:18,547,370...18,580,291
JBrowse link
regulation of protein K63-linked ubiquitination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sash1 SAM and SH3 domain containing 1 ISO (PMID:23776175) RGD PMID:23776175 NCBI chr 1:2,782,905...2,950,749
Ensembl chr 1:2,782,864...2,846,200
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      regulation of metabolic process 6985
        regulation of cellular metabolic process 6234
          regulation of cellular protein metabolic process 2805
            regulation of protein modification process 1965
              regulation of protein modification by small protein conjugation or removal 248
                regulation of protein ubiquitination 212
                  regulation of protein polyubiquitination 29
                    negative regulation of protein polyubiquitination + 12
                    positive regulation of protein polyubiquitination + 15
                    regulation of protein K48-linked ubiquitination + 5
                    regulation of protein K63-linked ubiquitination + 12
                    regulation of protein linear polyubiquitination + 2
Path 2
Term Annotations click to browse term
  biological_process 20027
    metabolic process 12278
      organic substance metabolic process 11660
        macromolecule metabolic process 10098
          protein metabolic process 6264
            cellular protein metabolic process 5570
              cellular protein modification process 3949
                protein modification by small protein conjugation or removal 952
                  protein modification by small protein conjugation 816
                    protein ubiquitination 767
                      regulation of protein ubiquitination 212
                        regulation of protein polyubiquitination 29
                          negative regulation of protein polyubiquitination + 12
                          positive regulation of protein polyubiquitination + 15
                          regulation of protein K48-linked ubiquitination + 5
                          regulation of protein K63-linked ubiquitination + 12
                          regulation of protein linear polyubiquitination + 2
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.