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ONTOLOGY REPORT - ANNOTATIONS


Term:endoplasmic reticulum to cytosol transport
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Accession:GO:1903513 term browser browse the term
Definition:The directed movement of substances from endoplasmic reticulum to cytosol.
Synonyms:exact_synonym: ER to cytosol transport


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membrane protein proteolysis involved in retrograde protein transport, ER to cytosol term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hm13 histocompatibility minor 13 ISO (PMID:25239945) RGD PMID:25239945 NCBI chr 3:148,150,695...148,189,623
Ensembl chr 3:148,150,698...148,189,623
JBrowse link
G Rhbdd1 rhomboid domain containing 1 ISO (MGI:5437551|PMID:22795130) RGD PMID:22795130 MGI:5437551 NCBI chr 9:88,110,731...88,229,462
Ensembl chr 9:88,110,731...88,229,479
JBrowse link
negative regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Derl2 derlin 2 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr10:57,641,682...57,653,554
Ensembl chr10:57,644,207...57,653,359
JBrowse link
G Derl3 derlin 3 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr20:13,692,102...13,707,645
Ensembl chr20:13,704,314...13,706,205
JBrowse link
G Erlec1 endoplasmic reticulum lectin 1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr14:115,314,890...115,352,871
Ensembl chr14:115,314,890...115,352,562
JBrowse link
G Os9 OS9, endoplasmic reticulum lectin ISO (PMID:25660456) RGD PMID:25660456 NCBI chr 7:70,378,625...70,407,135
Ensembl chr 7:70,380,311...70,407,177
JBrowse link
G Svip small VCP interacting protein ISO
IBA
(PMID:25660456)
PMID:21873635
RGD PMID:25660456, PMID:21873635 RGD:13792537 NCBI chr 1:107,368,117...107,373,807
Ensembl chr 1:107,368,117...107,373,807
JBrowse link
G Ubac2 UBA domain containing 2 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr15:108,286,407...108,433,531
Ensembl chr15:108,286,453...108,433,529
JBrowse link
G Ube2g2 ubiquitin-conjugating enzyme E2G 2 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr20:11,700,089...11,721,823
Ensembl chr20:11,700,089...11,721,838
JBrowse link
G Ube2j1 ubiquitin-conjugating enzyme E2, J1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr 5:48,274,387...48,292,699
Ensembl chr 5:48,274,477...48,290,658
JBrowse link
G Yod1 YOD1 deubiquitinase ISO (PMID:24068323) RGD PMID:24068323 NCBI chr13:47,441,296...47,443,013
Ensembl chr13:47,440,803...47,443,188
JBrowse link
positive regulation of retrograde protein transport, ER to cytosol term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcap31 B-cell receptor-associated protein 31 ISO (PMID:18555783) RGD PMID:18555783 NCBI chr  X:157,094,365...157,126,397
Ensembl chr  X:157,095,937...157,126,393
JBrowse link
G Edem1 ER degradation enhancing alpha-mannosidase like protein 1 ISO UniProtKB:Q9BV94 (PMID:24200403)
(MGI:5563002|PMID:24200403)
RGD PMID:24200403 MGI:5563002 NCBI chr 4:140,886,644...140,918,654
Ensembl chr 4:140,886,545...140,915,779
JBrowse link
G Edem2 ER degradation enhancing alpha-mannosidase like protein 2 ISO UniProtKB:Q92611 (PMID:24200403)
(MGI:5563002|PMID:24200403)
RGD PMID:24200403 MGI:5563002 NCBI chr 3:151,232,741...151,258,559
Ensembl chr 3:151,232,751...151,258,580
JBrowse link
retrograde protein transport, ER to cytosol term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aup1 AUP1, lipid droplet regulating VLDL assembly factor ISO (PMID:25660456) RGD PMID:25660456 NCBI chr 4:113,887,030...113,890,103
Ensembl chr 4:113,887,115...113,890,101
JBrowse link
G Derl1 derlin 1 ISO (PMID:15215855), (PMID:15215856), (PMID:25660456) RGD PMID:15215855, PMID:15215856, PMID:25660456 NCBI chr 7:97,737,176...97,759,852
Ensembl chr 7:97,737,178...97,759,852
JBrowse link
G Derl2 derlin 2 ISO (PMID:16449189)
MGI:4947129 (MGI:4947015|PMID:21220515)
RGD PMID:16449189, PMID:21220515 MGI:4947015 NCBI chr10:57,641,682...57,653,554
Ensembl chr10:57,644,207...57,653,359
JBrowse link
G Faf2 Fas associated factor family member 2 ISO
IEA
(PMID:25660456)
GO_REF:0000107
RGD
Ensembl
PMID:25660456 GO_REF:0000107 NCBI chr17:10,485,650...10,527,886
Ensembl chr17:10,485,642...10,527,864
JBrowse link
G Herpud1 homocysteine inducible ER protein with ubiquitin like domain 1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr19:11,046,905...11,057,440
Ensembl chr19:11,046,909...11,057,254
JBrowse link
G Hsp90b1 heat shock protein 90 beta family member 1 ISO
IEA
(PMID:25660456)
GO_REF:0000107
RGD
Ensembl
PMID:25660456 GO_REF:0000107 NCBI chr 7:27,226,570...27,240,533
Ensembl chr 7:27,226,569...27,240,533
JBrowse link
G Nploc4 NPL4 homolog, ubiquitin recognition factor ISO
ISS
IEA
(PMID:25660456)
GO_REF:0000024
GO_REF:0000107
RGD
ParkinsonsUK-UCL
Ensembl
PMID:25660456 GO_REF:0000024, GO_REF:0000107 NCBI chr10:109,553,518...109,610,087
Ensembl chr10:109,552,649...109,610,030
JBrowse link
G Os9 OS9, endoplasmic reticulum lectin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,378,625...70,407,135
Ensembl chr 7:70,380,311...70,407,177
JBrowse link
G Sec61b SEC61 translocon subunit beta ISO (PMID:17215517) RGD PMID:17215517 NCBI chr 5:63,192,322...63,200,532
Ensembl chr 5:63,192,298...63,200,508
JBrowse link
G Sel1l SEL1L adaptor subunit of ERAD E3 ubiquitin ligase ISO
IEA
(PMID:25660456)
GO_REF:0000107
RGD
Ensembl
PMID:25660456 GO_REF:0000107 NCBI chr 6:115,572,683...115,616,904
Ensembl chr 6:115,572,649...115,616,859
JBrowse link
G Selenos selenoprotein S IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:15215856)
Ensembl
RGD
PMID:15215856, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 1:126,979,579...126,989,344
Ensembl chr 1:126,979,575...126,989,344
JBrowse link
G Syvn1 synoviolin 1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr 1:221,409,281...221,416,229
Ensembl chr 1:221,409,271...221,417,886
JBrowse link
G Tmem129 transmembrane protein 129, E3 ubiquitin ligase ISO (PMID:24807418) RGD PMID:24807418 NCBI chr14:82,350,734...82,356,084
Ensembl chr14:82,350,734...82,356,078
JBrowse link
G Ufd1 ubiquitin recognition factor in ER associated degradation 1 ISO (PMID:25660456) RGD PMID:25660456 NCBI chr11:86,304,836...86,328,478
Ensembl chr11:86,304,815...86,328,469
JBrowse link
G Vcp valosin-containing protein ISO
IBA
(PMID:15215856), (PMID:25660456)
(MGI:5634892|PMID:12847084)
PMID:21873635
RGD PMID:12847084, PMID:15215856, PMID:25660456, PMID:21873635 MGI:5634892, RGD:13792537 NCBI chr 5:58,426,548...58,445,953
Ensembl chr 5:58,426,549...58,445,953
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    localization 6478
      cellular localization 2966
        intracellular transport 1514
          endoplasmic reticulum to cytosol transport 27
            retrograde protein transport, ER to cytosol + 27
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular localization 2966
        establishment of localization in cell 2177
          intracellular transport 1514
            endoplasmic reticulum to cytosol transport 27
              retrograde protein transport, ER to cytosol + 27
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.