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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of cytoplasmic transport
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Accession:GO:1903649 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of cytoplasmic transport.
Synonyms:narrow_synonym: regulation of cytoplasmic streaming


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negative regulation of early endosome to late endosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snx12 sorting nexin 12 ISO (PMID:22719997) RGD PMID:22719997 NCBI chr  X:70,989,822...71,127,330
Ensembl chr  X:70,989,822...71,127,278
JBrowse link
G Snx3 sorting nexin 3 ISO (PMID:18767904) RGD PMID:18767904 NCBI chr20:47,225,382...47,263,390
Ensembl chr20:47,225,619...47,263,390
JBrowse link
negative regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfip1 ADP-ribosylation factor interacting protein 1 IEA
ISO
GO_REF:0000107
(PMID:25789876)
Ensembl
RGD
PMID:25789876 GO_REF:0000107 NCBI chr 2:183,503,250...183,582,798
Ensembl chr 2:183,504,330...183,582,553
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule-associated protein 2 IMP PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 9:73,204,753...73,462,965
Ensembl chr 9:73,319,710...73,462,972
JBrowse link
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:22127389 RGD:12790715 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
G Trim46 tripartite motif-containing 46 IMP PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 2:188,548,608...188,561,617
Ensembl chr 2:188,548,644...188,561,360
JBrowse link
positive regulation of early endosome to late endosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab2 DAB adaptor protein 2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:55,747,353...55,768,848
Ensembl chr 2:55,747,318...55,768,270
JBrowse link
G Ezr ezrin ISO UniProtKB:P26038|UniProtKB:P35241 (PMID:21148287) RGD PMID:21148287 NCBI chr 1:47,287,872...47,331,412
Ensembl chr 1:47,287,874...47,331,412
JBrowse link
G Msn moesin IEA
ISO
GO_REF:0000107
UniProtKB:P15311|UniProtKB:P35241 (PMID:21148287)
Ensembl
RGD
PMID:21148287 GO_REF:0000107 NCBI chr  X:65,226,834...65,294,192
Ensembl chr  X:65,226,748...65,295,810
JBrowse link
G Mtmr2 myotubularin related protein 2 IMP PMID:20410104 BHF-UCL PMID:20410104 RGD:8553482 NCBI chr 8:12,283,471...12,334,014
Ensembl chr 8:12,284,528...12,333,316
JBrowse link
G Ptpn23 protein tyrosine phosphatase, non-receptor type 23 IEA
ISO
GO_REF:0000107
(PMID:21724833)
Ensembl
RGD
PMID:21724833 GO_REF:0000107 NCBI chr 8:118,628,777...118,651,238
Ensembl chr 8:118,628,777...118,651,238
JBrowse link
G Rab21 RAB21, member RAS oncogene family ISO (PMID:15561770) RGD PMID:15561770 NCBI chr 7:58,261,985...58,286,770
Ensembl chr 7:58,261,992...58,286,770
JBrowse link
G Rdx radixin ISO UniProtKB:P15311|UniProtKB:P26038 (PMID:21148287) RGD PMID:21148287 NCBI chr 8:56,570,728...56,612,851
Ensembl chr 8:56,585,396...56,610,612
JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes ISO (PMID:21148287) RGD PMID:21148287 NCBI chr 8:48,677,492...48,692,295
Ensembl chr 8:48,677,492...48,692,295
JBrowse link
positive regulation of early endosome to recycling endosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sorl1 sortilin related receptor 1 ISO (PMID:22621900) RGD PMID:22621900 NCBI chr 8:46,228,077...46,287,171 JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl CpG binding protein 2 IMP RGD PMID:22127389 RGD:12790715 NCBI chr  X:156,650,389...156,713,813
Ensembl chr  X:156,655,960...156,705,233
JBrowse link
positive regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eipr1 EARP complex and GARP complex interacting protein 1 ISS
ISO
GO_REF:0000024
(PMID:27440922)
UniProt
RGD
PMID:27440922 GO_REF:0000024 NCBI chr 6:48,021,771...48,135,241
Ensembl chr 6:48,021,771...48,135,241
JBrowse link
regulation of dense core granule transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mapk8 mitogen-activated protein kinase 8 IDA PMID:29166604 UniProt PMID:29166604 RGD:15023486 NCBI chr16:9,620,854...9,709,342
Ensembl chr16:9,625,177...9,709,347
JBrowse link
regulation of early endosome to late endosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chmp3 charged multivesicular body protein 3 ISO (PMID:16554368) RGD PMID:16554368 NCBI chr 4:99,449,213...99,496,156
Ensembl chr 4:99,449,111...99,494,423
JBrowse link
G Dennd10 DENN domain containing 10 ISO (PMID:30771381) RGD PMID:30771381 NCBI chr 1:282,188,080...282,211,588
Ensembl chr 1:282,188,110...282,210,580
JBrowse link
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 ISO (PMID:18256511) RGD PMID:18256511 NCBI chr 8:112,697,907...112,830,445
Ensembl chr 8:112,698,348...112,807,598
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr 8:69,134,218...69,722,573
Ensembl chr 8:69,134,223...69,164,758
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr 7:11,458,971...11,478,520
Ensembl chr 7:11,458,967...11,478,489
JBrowse link
G Mapk1 mitogen activated protein kinase 1 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254
JBrowse link
G Mapk3 mitogen activated protein kinase 3 TAS PMID:19565474 UniProt PMID:19565474 RGD:8553538 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975
JBrowse link
G Sh3glb1 SH3 domain -containing GRB2-like endophilin B1 IMP RGD PMID:18768694 RGD:13504749 NCBI chr 2:250,709,812...250,744,216
Ensembl chr 2:250,709,439...250,744,196
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase ISO (PMID:21724833) RGD PMID:21724833 NCBI chr 3:153,547,807...153,595,643
Ensembl chr 3:153,580,861...153,595,642
JBrowse link
regulation of early endosome to recycling endosome transport term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnajc13 DnaJ heat shock protein family (Hsp40) member C13 ISO (PMID:18256511) RGD PMID:18256511 NCBI chr 8:112,697,907...112,830,445
Ensembl chr 8:112,698,348...112,807,598
JBrowse link
regulation of retrograde transport, endosome to Golgi term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrk2 leucine-rich repeat kinase 2 ISO
IBA
UniProtKB:Q7KVL7 (PMID:23395371)
PMID:21873635
RGD PMID:23395371, PMID:21873635 RGD:13792537 NCBI chr 7:132,857,311...133,018,549
Ensembl chr 7:132,857,628...133,018,584
JBrowse link
G Rab29 RAB29, member RAS oncogene family IMP PMID:23395371 ParkinsonsUK-UCL PMID:23395371 RGD:8553873 NCBI chr13:48,644,575...48,650,229
Ensembl chr13:48,644,604...48,650,220
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular localization 2966
        intracellular transport 1514
          cytosolic transport 162
            regulation of cytoplasmic transport 28
              modulation by virus of host cytoplasmic transport 0
              negative regulation of cytoplasmic transport + 3
              positive regulation of cytoplasmic transport + 13
              regulation of dense core granule transport + 4
              regulation of early endosome to late endosome transport + 19
              regulation of early endosome to recycling endosome transport + 2
              regulation of retrograde transport, endosome to Golgi + 4
Path 2
Term Annotations click to browse term
  biological_process 20020
    cellular process 18792
      cellular localization 2966
        establishment of localization in cell 2177
          intracellular transport 1514
            regulation of intracellular transport 372
              regulation of cytoplasmic transport 28
                modulation by virus of host cytoplasmic transport 0
                negative regulation of cytoplasmic transport + 3
                positive regulation of cytoplasmic transport + 13
                regulation of dense core granule transport + 4
                regulation of early endosome to late endosome transport + 19
                regulation of early endosome to recycling endosome transport + 2
                regulation of retrograde transport, endosome to Golgi + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.