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ONTOLOGY REPORT - ANNOTATIONS


Term:negative regulation of chromatin organization
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Accession:GO:1905268 term browser browse the term
Definition:Any process that stops, prevents or reduces the frequency, rate or extent of chromatin organization.
Synonyms:exact_synonym: down regulation of chromatin organisation;   down regulation of chromatin organization;   down regulation of establishment or maintenance of chromatin architecture;   downregulation of chromatin organisation;   downregulation of chromatin organization;   downregulation of establishment or maintenance of chromatin architecture;   negative regulation of chromatin organisation;   negative regulation of establishment or maintenance of chromatin architecture
 narrow_synonym: inhibition of chromatin organisation;   inhibition of chromatin organization;   inhibition of establishment or maintenance of chromatin architecture
 related_synonym: negative regulation of chromatin modification
 alt_id: GO:1903309


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negative regulation of chromatin silencing term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atad2 ATPase family, AAA domain containing 2 JBrowse link 7 97,984,754 98,027,379 RGD:13792537
G Atad2b ATPase family, AAA domain containing 2B JBrowse link 6 28,998,080 29,066,850 RGD:13792537
G H1f0 H1 histone family, member 0 JBrowse link 7 120,260,776 120,262,636 RGD:13792537
G H1f1 H1.1 linker histone, cluster member JBrowse link 17 43,614,101 43,614,844 RGD:13792537
G H1f10 H1.10 linker histone JBrowse link 4 119,889,016 119,892,661 RGD:13792537
G H1f2 H1.2 linker histone, cluster member JBrowse link 17 43,638,938 43,640,445 RGD:13792537
G H1f4 H1.4 linker histone, cluster member JBrowse link 17 43,734,461 43,735,120 RGD:13792537
G H1f5 H1.5 linker histone, cluster member JBrowse link 17 44,766,313 44,766,981 RGD:13792537
G H1f6 H1.6 linker histone, cluster member JBrowse link 17 43,675,190 43,675,934 RGD:13792537
G H1f8 H1.8 linker histone JBrowse link 4 147,844,658 147,849,779 RGD:13792537
G H4f3 H1.3 linker histone, cluster member JBrowse link 17 43,797,711 43,798,450 RGD:13792537
G Hils1 histone linker H1 domain, spermatid-specific 1 JBrowse link 10 82,775,691 82,776,487 RGD:13792537
negative regulation of DNA methylation-dependent heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aicda activation-induced cytidine deaminase JBrowse link 4 155,359,909 155,371,104 RGD:1624291
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 JBrowse link 4 155,386,367 155,414,034 RGD:1624291
RGD:1600115
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:1624291
negative regulation of histone acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Anp32a acidic nuclear phosphoprotein 32 family member A JBrowse link 8 67,295,578 67,333,075 RGD:10401132
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1624291
RGD:1600115
RGD:13792537
G Ctbp1 C-terminal binding protein 1 JBrowse link 14 82,762,109 82,789,350 RGD:1624291
G Foxp3 forkhead box P3 JBrowse link X 15,753,175 15,768,648 RGD:1624291
G L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 JBrowse link 7 122,896,860 122,918,025 RGD:1624291
G Msx3 msh homeobox 3 JBrowse link 1 212,514,223 212,517,151 RGD:1624291
G Noc2l NOC2-like nucleolar associated transcriptional repressor JBrowse link 5 173,659,796 173,672,699 RGD:1624291
RGD:13792537
G Sdr16c5 short chain dehydrogenase/reductase family 16C, member 5 JBrowse link 5 16,904,926 16,930,111 RGD:1624291
G Snca synuclein alpha JBrowse link 4 90,782,412 90,883,236 RGD:1624291
G Taf7 TATA-box binding protein associated factor 7 JBrowse link 18 30,779,149 30,781,297 RGD:1624291
G Thap7 THAP domain containing 7 JBrowse link 11 87,399,430 87,403,381 RGD:1624291
G Twist1 twist family bHLH transcription factor 1 JBrowse link 6 53,401,241 53,403,235 RGD:1624291
negative regulation of histone deacetylase activity term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:1624291
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
negative regulation of histone deacetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxp3 forkhead box P3 JBrowse link X 15,753,175 15,768,648 RGD:1624291
G LOC100910107 ubiquitin carboxyl-terminal hydrolase DUB-1-like JBrowse link 1 169,720,247 169,721,788 RGD:1624291
G Prmt6 protein arginine methyltransferase 6 JBrowse link 2 213,173,403 213,180,721 RGD:1624291
G Ski SKI proto-oncogene JBrowse link 5 172,556,196 172,623,878 RGD:1600115
G Sphk2 sphingosine kinase 2 JBrowse link 1 101,692,972 101,700,604 RGD:1624291
G Ucn urocortin JBrowse link 6 26,602,144 26,602,974 RGD:1600115
negative regulation of histone H2A K63-linked ubiquitination term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otub1 OTU deubiquitinase, ubiquitin aldehyde binding 1 JBrowse link 1 222,451,674 222,459,952 RGD:1624291
RGD:13792537
RGD:1600115
G Otub2 OTU deubiquitinase, ubiquitin aldehyde binding 2 JBrowse link 6 127,282,445 127,301,086 RGD:13792537
G Trip12 thyroid hormone receptor interactor 12 JBrowse link 9 92,305,059 92,435,388 RGD:1600115
RGD:13792537
RGD:1624291
G Ubr5 ubiquitin protein ligase E3 component n-recognin 5 JBrowse link 7
7
76,789,110
76,839,661
76,835,517
76,907,441
RGD:1600115
RGD:13792537
RGD:1624291
negative regulation of histone H3-K14 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:1600115
negative regulation of histone H3-K27 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:1624291
negative regulation of histone H3-K27 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ezhip EZH inhibitory protein JBrowse link X 17,250,334 17,253,582 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:1624291
G Mtf2 metal response element binding transcription factor 2 JBrowse link 14 2,656,776 2,701,027 RGD:1624291
G Phf1 PHD finger protein 1 JBrowse link 20 5,526,926 5,531,940 RGD:1624291
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor JBrowse link 10 65,470,470 65,507,581 RGD:1624291
negative regulation of histone H3-K27 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ezhip EZH inhibitory protein JBrowse link X 17,250,334 17,253,582 RGD:1624291
negative regulation of histone H3-K36 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 co-repressor JBrowse link X 11,570,155 11,692,022 RGD:1624291
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:1600115
RGD:1624291
negative regulation of histone H3-K4 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bcor BCL6 co-repressor JBrowse link X 11,570,155 11,692,022 RGD:1624291
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1624291
RGD:1600115
G Gfi1b growth factor independent 1B transcriptional repressor JBrowse link 3 7,190,721 7,203,444 RGD:1624291
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:1624291
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:1624291
G Prmt6 protein arginine methyltransferase 6 JBrowse link 2 213,173,403 213,180,721 RGD:1624291
G Wdr5 WD repeat domain 5 JBrowse link 3 6,061,892 6,080,724 RGD:1624291
negative regulation of histone H3-K79 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mllt6 MLLT6, PHD finger containing JBrowse link 10 85,607,988 85,628,171 RGD:1624291
negative regulation of histone H3-K9 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hdac8 histone deacetylase 8 JBrowse link X 72,163,777 72,370,058 RGD:13208813
G Zfp451 zinc finger protein 451 JBrowse link 9 38,395,464 38,451,585 RGD:1624291
negative regulation of histone H3-K9 dimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:1624291
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
negative regulation of histone H3-K9 methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:1624291
RGD:1600115
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:1600115
RGD:1624291
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:1624291
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:1624291
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:1624291
RGD:1600115
G Pax5 paired box 5 JBrowse link 5 60,007,587 60,191,973 RGD:1624291
negative regulation of histone H3-K9 trimethylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:1624291
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:1624291
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:1624291
G Kdm4d lysine demethylase 4D JBrowse link 8 12,968,192 12,993,651 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 20 13,679,955 13,702,821 RGD:1624291
negative regulation of histone H4 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctbp1 C-terminal binding protein 1 JBrowse link 14 82,762,109 82,789,350 RGD:1624291
RGD:1600115
G Spi1 Spi-1 proto-oncogene JBrowse link 3 79,918,127 79,937,708 RGD:1624291
G Taf7 TATA-box binding protein associated factor 7 JBrowse link 18 30,779,149 30,781,297 RGD:1624291
negative regulation of histone H4-K16 acetylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:1624291
RGD:1600115
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1624291
G Pih1d1 PIH1 domain containing 1 JBrowse link 1 101,151,240 101,156,806 RGD:1624291
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:1624291
RGD:1600115
negative regulation of histone methylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fendrr FOXF1 adjacent non-coding developmental regulatory RNA JBrowse link 19 52,991,283 53,010,509 RGD:1624291
G Jarid2 jumonji and AT-rich interaction domain containing 2 JBrowse link 17 20,183,440 20,365,219 RGD:1624291
negative regulation of histone phosphorylation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:1624291
G Twist1 twist family bHLH transcription factor 1 JBrowse link 6 53,401,241 53,403,235 RGD:1624291
G Ube2b ubiquitin-conjugating enzyme E2B JBrowse link 10 37,439,947 37,454,867 RGD:1624291
negative regulation of ribosomal DNA heterochromatin assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Phf2 PHD finger protein 2 JBrowse link 17 16,240,458 16,274,626 RGD:1624291
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19678
    cellular process 18452
      cellular component organization or biogenesis 6667
        cellular component organization 6427
          chromatin organization 830
            negative regulation of chromatin organization 70
              negative regulation of chromatin assembly or disassembly + 5
              negative regulation of chromatin silencing + 12
              negative regulation of chromatin-mediated maintenance of transcription 0
              negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging 0
              negative regulation of histone H2A-H2B dimer displacement 0
              negative regulation of histone exchange + 0
              negative regulation of histone modification + 53
Path 2
Term Annotations click to browse term
  biological_process 19678
    biological regulation 13599
      regulation of biological process 12921
        regulation of cellular process 12405
          regulation of cellular component organization 2610
            negative regulation of cellular component organization 786
              negative regulation of organelle organization 434
                negative regulation of chromosome organization 153
                  negative regulation of chromatin organization 70
                    negative regulation of chromatin assembly or disassembly + 5
                    negative regulation of chromatin silencing + 12
                    negative regulation of chromatin-mediated maintenance of transcription 0
                    negative regulation of extrachromosomal rDNA circle accumulation involved in replicative cell aging 0
                    negative regulation of histone H2A-H2B dimer displacement 0
                    negative regulation of histone exchange + 0
                    negative regulation of histone modification + 53
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.