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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of DNA-templated transcription, initiation
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Accession:GO:2000142 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of DNA-templated transcription initiation.
Synonyms:exact_synonym: regulation of DNA-dependent transcription, initiation;   regulation of initiation of DNA-dependent transcription


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regulation of DNA-templated transcription, initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor JBrowse link 10 3,170,387 3,214,648 RGD:1624291
negative regulation of DNA-templated transcription, initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Morc1 MORC family CW-type zinc finger 1 JBrowse link 11 54,762,654 55,044,581 RGD:1624291
G Thra thyroid hormone receptor alpha JBrowse link 10 86,657,285 86,684,935 RGD:1624291
negative regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hmgb1 high mobility group box 1 JBrowse link 12 7,082,529 7,090,246 RGD:1624291
G Thra thyroid hormone receptor alpha JBrowse link 10 86,657,285 86,684,935 RGD:1600115
RGD:1624291
negative regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ctnnbip1 catenin, beta-interacting protein 1 JBrowse link 5 166,464,170 166,513,030 RGD:1624291
G Hey2 hes-related family bHLH transcription factor with YRPW motif 2 JBrowse link 1 29,191,170 29,201,257 RGD:1624291
G Zfp451 zinc finger protein 451 JBrowse link 9 38,395,464 38,451,585 RGD:1624291
positive regulation of DNA-templated transcription, initiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bclaf1 BCL2-associated transcription factor 1 JBrowse link 1 15,799,753 15,828,838 RGD:1624291
G Cebpa CCAAT/enhancer binding protein alpha JBrowse link 1 91,363,492 91,366,164 RGD:1624291
G Ctnnb1 catenin beta 1 JBrowse link 8 129,601,511 129,628,378 RGD:1624291
RGD:1600115
G Fosl1 FOS like 1, AP-1 transcription factor subunit JBrowse link 1 220,826,560 220,835,066 RGD:1624291
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:1624291
G Mitf melanocyte inducing transcription factor JBrowse link 4 130,172,484 130,425,496 RGD:1624291
G Setx senataxin JBrowse link 3 7,680,430 7,731,815 RGD:1624291
G Twist1 twist family bHLH transcription factor 1 JBrowse link 6 53,401,241 53,403,235 RGD:1624291
positive regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:1624291
G Cand1 cullin-associated and neddylation-dissociated 1 JBrowse link 7 62,124,362 62,162,451 RGD:8553447
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:1625706
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1600115
RGD:1624291
G Ikzf1 IKAROS family zinc finger 1 JBrowse link 14 91,782,281 91,867,828 RGD:1624291
G Psmc2 proteasome 26S subunit, ATPase 2 JBrowse link 4 9,867,132 9,881,383 RGD:13792537
G Psmc3 proteasome 26S subunit, ATPase 3 JBrowse link 3 79,876,938 79,882,319 RGD:13792537
G Psmc4 proteasome 26S subunit, ATPase 4 JBrowse link 1 84,978,220 84,986,536 RGD:13792537
G Psmc5 proteasome 26S subunit, ATPase 5 JBrowse link 10 94,445,877 94,451,811 RGD:13792537
G Psmc6 proteasome 26S subunit, ATPase 6 JBrowse link 15 19,667,453 19,688,916 RGD:13792537
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:1624291
G Wnt10b Wnt family member 10B JBrowse link 7 140,448,284 140,466,159 RGD:1624291
positive regulation of transcription initiation from RNA polymerase II promoter term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dhx36 DEAH-box helicase 36 JBrowse link 2 152,785,844 152,824,549 RGD:1600115
RGD:1624291
G Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit JBrowse link 1 80,256,973 80,268,198 RGD:1624291
G Ercc6 ERCC excision repair 6, chromatin remodeling factor JBrowse link 16 8,734,028 8,804,610 RGD:1624291
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:1600115
RGD:1624291
G Gtf2f2 general transcription factor IIF subunit 2 JBrowse link 15 57,942,057 58,068,892 RGD:13792537
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:1624291
G Hnf1b HNF1 homeobox B JBrowse link 10 71,159,863 71,218,902 RGD:1624291
G Irf8 interferon regulatory factor 8 JBrowse link 19 54,314,859 54,336,643 RGD:1624291
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:1624291
RGD:1600115
G Med12 mediator complex subunit 12 JBrowse link X 71,174,653 71,197,812 RGD:1624291
G Med13 mediator complex subunit 13 JBrowse link 10 73,702,327 73,787,084 RGD:1624291
G Med14 mediator complex subunit 14 JBrowse link X 10,964,035 11,082,403 RGD:1624291
G Med16 mediator complex subunit 16 JBrowse link 7 12,619,739 12,632,241 RGD:1624291
G Med17 mediator complex subunit 17 JBrowse link 8 13,522,257 13,835,302 RGD:1624291
G Med24 mediator complex subunit 24 JBrowse link 10 86,620,166 86,658,014 RGD:1624291
G Med30 mediator complex subunit 30 JBrowse link 7 92,234,584 92,260,019 RGD:1624291
G Med4 mediator complex subunit 4 JBrowse link 15 55,406,543 55,416,816 RGD:1624291
G Myc MYC proto-oncogene, bHLH transcription factor JBrowse link 7 102,586,313 102,591,240 RGD:1624291
G Nkx2-5 NK2 homeobox 5 JBrowse link 10 16,635,989 16,638,758 RGD:1624291
RGD:1600115
G Paxip1 PAX interacting protein 1 JBrowse link 4 3,956,931 4,008,326 RGD:1624291
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:1624291
G Srf serum response factor JBrowse link 9 16,737,637 16,747,226 RGD:1624291
G Sub1 SUB1 regulator of transcription JBrowse link 2 62,019,902 62,034,704 RGD:13792537
G Taf6 TATA-box binding protein associated factor 6 JBrowse link 12 19,320,269 19,328,706 RGD:1624291
RGD:13792537
G Taf6l TATA-box binding protein associated factor 6 like JBrowse link 1 224,974,238 224,986,819 RGD:13792537
G Xpa XPA, DNA damage recognition and repair factor JBrowse link 5 61,749,767 61,793,641 RGD:1624291
regulation of RNA polymerase II transcription preinitiation complex assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atf7ip activating transcription factor 7 interacting protein JBrowse link 4 170,476,998 170,563,063 RGD:1624291
G Dr1 down-regulator of transcription 1 JBrowse link 14 2,463,651 2,475,004 RGD:13792537
G LOC100910207 protein Dr1-like JBrowse link 14 1,621,021 1,632,432 RGD:13792537

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      regulation of metabolic process 6886
        regulation of macromolecule metabolic process 6375
          regulation of gene expression 4685
            regulation of transcription, DNA-templated 3182
              regulation of DNA-templated transcription, initiation 56
                negative regulation of DNA-templated transcription, initiation + 6
                positive regulation of DNA-templated transcription, initiation + 46
                regulation of transcription initiation from RNA polymerase I promoter 0
                regulation of transcription initiation from RNA polymerase II promoter + 46
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleic acid metabolic process 4850
              RNA metabolic process 4347
                RNA biosynthetic process 3361
                  nucleic acid-templated transcription 3349
                    transcription, DNA-templated 3302
                      DNA-templated transcription, initiation 125
                        regulation of DNA-templated transcription, initiation 56
                          negative regulation of DNA-templated transcription, initiation + 6
                          positive regulation of DNA-templated transcription, initiation + 46
                          regulation of transcription initiation from RNA polymerase I promoter 0
                          regulation of transcription initiation from RNA polymerase II promoter + 46
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.