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ONTOLOGY REPORT - ANNOTATIONS


Term:regulation of autophagosome assembly
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Accession:GO:2000785 term browser browse the term
Definition:Any process that modulates the frequency, rate or extent of autophagosome assembly.
Synonyms:exact_synonym: regulation of autophagic vacuole assembly;   regulation of autophagosome biosynthesis;   regulation of autophagosome formation
 related_synonym: regulation of PAS formation;   regulation of autophagic vacuole formation


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regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G C9orf72 C9orf72-SMCR8 complex subunit JBrowse link 9 27,395,054 27,422,282 RGD:9068941
G IFT20 intraflagellar transport 20 JBrowse link 17 28,438,960 28,446,113 RGD:9068941
G IFT88 intraflagellar transport 88 JBrowse link 13 1,893,102 2,017,771 RGD:9068941
G MTMR3 myotubularin related protein 3 JBrowse link 22 10,925,275 11,072,554 RGD:9068941
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing JBrowse link 2B 95,505,376 95,597,792 RGD:9068941
G RAB1B RAB1B, member RAS oncogene family JBrowse link 11 61,634,017 61,642,945 RGD:9068941
G RNF5 ring finger protein 5 JBrowse link 6 31,825,799 31,828,188 RGD:9068941
G TBC1D14 TBC1 domain family member 14 RGD:9068941
G UBQLN2 ubiquilin 2 JBrowse link X 48,829,844 48,835,040 RGD:9068941
negative regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G CHMP4A charged multivesicular body protein 4A JBrowse link 14 4,985,642 4,989,985 RGD:9068941
G CHMP4B charged multivesicular body protein 4B JBrowse link 20 30,098,796 30,146,347 RGD:9068941
G EHMT2 euchromatic histone lysine methyltransferase 2 JBrowse link 6 31,542,946 31,560,894 RGD:9068941
G FEZ1 fasciculation and elongation protein zeta 1 JBrowse link 11 120,272,187 120,322,600 RGD:9068941
G FEZ2 fasciculation and elongation protein zeta 2 JBrowse link 2A 36,581,436 36,628,054 RGD:9068941
G LRRK2 leucine rich repeat kinase 2 JBrowse link 12 48,343,621 48,488,337 RGD:9068941
G MTM1 myotubularin 1 JBrowse link X 140,218,742 140,323,495 RGD:9068941
G NUPR1 nuclear protein 1, transcriptional regulator RGD:9068941
G PHF23 PHD finger protein 23 JBrowse link 17 7,264,944 7,269,549 RGD:9068941
G PINK1 PTEN induced kinase 1 JBrowse link 1 19,583,330 19,601,248 RGD:9068941
G SCFD1 sec1 family domain containing 1 JBrowse link 14 11,401,378 11,508,418 RGD:9068941
G SEC22B SEC22 homolog B, vesicle trafficking protein JBrowse link 1 82,383,313 82,404,612 RGD:9068941
G SMCR8 SMCR8-C9orf72 complex subunit JBrowse link 17 32,858,205 32,871,132 RGD:9068941
G TMEM39A transmembrane protein 39A JBrowse link 3 116,549,308 116,586,260 RGD:9068941
positive regulation of autophagosome assembly term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G BECN1 beclin 1 JBrowse link 17 14,493,619 14,507,809 RGD:9068941
G ELAPOR1 endosome-lysosome associated apoptosis and autophagy regulator 1 JBrowse link 1 111,490,488 111,583,703 RGD:9068941
G LRSAM1 leucine rich repeat and sterile alpha motif containing 1 JBrowse link 9 98,571,796 98,623,581 RGD:9068941
G PIP4K2A phosphatidylinositol-5-phosphate 4-kinase type 2 alpha JBrowse link 10 22,691,355 22,870,628 RGD:9068941
G PIP4K2B phosphatidylinositol-5-phosphate 4-kinase type 2 beta JBrowse link 17 18,471,609 18,507,916 RGD:9068941
G PIP4K2C phosphatidylinositol-5-phosphate 4-kinase type 2 gamma JBrowse link 12 31,323,346 31,335,626 RGD:9068941
G RAB3GAP1 RAB3 GTPase activating protein catalytic subunit 1 JBrowse link 2B 24,692,363 24,810,685 RGD:9068941
G RAB3GAP2 RAB3 GTPase activating non-catalytic protein subunit 2 JBrowse link 1 195,720,895 195,842,619 RGD:9068941
G RALB RAS like proto-oncogene B JBrowse link 2B 7,185,192 7,227,220 RGD:9068941
G SH3GLB1 SH3 domain containing GRB2 like, endophilin B1 JBrowse link 1 119,224,304 119,267,986 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 12 129,549,399 129,579,087 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12490
    regulation of biological process 8628
      regulation of cellular process 8158
        regulation of cellular component biogenesis 946
          regulation of organelle assembly 220
            regulation of autophagosome assembly 34
              negative regulation of autophagosome assembly 15
              positive regulation of autophagosome assembly 11
Path 2
Term Annotations click to browse term
  biological_process 12490
    biological regulation 9101
      regulation of biological process 8628
        regulation of metabolic process 5265
          regulation of catabolic process 810
            regulation of cellular catabolic process 674
              regulation of autophagy 246
                regulation of macroautophagy 106
                  regulation of autophagosome assembly 34
                    negative regulation of autophagosome assembly 15
                    positive regulation of autophagosome assembly 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.