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ONTOLOGY REPORT - ANNOTATIONS


Term:abnormal chondrocyte morphology
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Accession:MP:0000166 term browser browse the term
Definition:any structural anomaly of a polymorphic cell that forms cartilage
Synonyms:exact_synonym: abnormal chondrocytes


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abnormal chondrocyte morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acan aggrecan JBrowse link 7 79,053,226 79,115,099 RGD:5509061
G Acp5 acid phosphatase 5, tartrate resistant JBrowse link 9 22,126,727 22,135,746 RGD:5509061
G Ank progressive ankylosis JBrowse link 15 27,466,677 27,594,909 RGD:5509061
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:5509061
G Atf2 activating transcription factor 2 JBrowse link 2 73,816,509 73,892,677 RGD:5509061
G Bmpr1a bone morphogenetic protein receptor, type 1A JBrowse link 14 34,411,061 34,503,336 RGD:5509061
G Bmpr1b bone morphogenetic protein receptor, type 1B JBrowse link 3 141,837,135 142,169,585 RGD:5509061
G Cbfb core binding factor beta JBrowse link 8 105,170,674 105,217,989 RGD:5509061
G Ccn3 cellular communication network factor 3 JBrowse link 15 54,745,910 54,753,762 RGD:5509061
G Col11a1 collagen, type XI, alpha 1 JBrowse link 3 114,030,479 114,220,756 RGD:5509061
G Col11a2 collagen, type XI, alpha 2 JBrowse link 17 34,038,919 34,066,684 RGD:5509061
G Col27a1 collagen, type XXVII, alpha 1 JBrowse link 4 63,214,009 63,334,991 RGD:5509061
G Col2a1 collagen, type II, alpha 1 JBrowse link 15 97,975,602 98,004,724 RGD:5509061
G Comp cartilage oligomeric matrix protein JBrowse link 8 70,373,548 70,382,066 RGD:5509061
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 JBrowse link 8 68,356,781 68,735,621 RGD:5509061
G Csgalnact2 chondroitin sulfate N-acetylgalactosaminyltransferase 2 JBrowse link 6 118,107,452 118,139,140 RGD:5509061
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:5509061
G Derl2 Der1-like domain family, member 2 JBrowse link 11 71,007,440 71,019,841 RGD:5509061
G Dym dymeclin JBrowse link 18 75,018,699 75,286,966 RGD:5509061
G E2f1 E2F transcription factor 1 JBrowse link 2 154,559,400 154,569,892 RGD:5509061
G E2f3 E2F transcription factor 3 JBrowse link 13 29,906,575 29,986,064 RGD:5509061
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 JBrowse link 10 24,637,914 24,712,159 RGD:5509061
G Fermt2 fermitin family member 2 JBrowse link 14 45,458,792 45,530,310 RGD:5509061
G Fgfr2 fibroblast growth factor receptor 2 JBrowse link 7 130,162,451 130,266,808 RGD:5509061
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 5 33,721,724 33,737,068 RGD:5509061
G Flnb filamin, beta JBrowse link 14 7,817,921 7,951,588 RGD:5509061
G Fosl2 fos-like antigen 2 JBrowse link 5 32,136,472 32,157,840 RGD:5509061
G Ghr growth hormone receptor JBrowse link 15 3,317,755 3,583,352 RGD:5509061
G Gnptab N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits JBrowse link 10 88,379,134 88,447,324 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Has2 hyaluronan synthase 2 JBrowse link 15 56,665,627 56,694,546 RGD:5509061
G Hspg2 perlecan (heparan sulfate proteoglycan 2) JBrowse link 4 137,468,751 137,570,630 RGD:5509061
G Hyal1 hyaluronoglucosaminidase 1 JBrowse link 9 107,576,950 107,581,699 RGD:5509061
G Idua iduronidase, alpha-L JBrowse link 5 108,660,331 108,685,446 RGD:5509061
G Ift88 intraflagellar transport 88 JBrowse link 14 57,424,064 57,517,936 RGD:5509061
G Igf1 insulin-like growth factor 1 JBrowse link 10 87,858,265 87,937,047 RGD:5509061
G Intu inturned planar cell polarity protein JBrowse link 3 40,531,291 40,704,776 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G Kif3a kinesin family member 3A JBrowse link 11 53,565,701 53,604,248 RGD:5509061
G Lrp4 low density lipoprotein receptor-related protein 4 JBrowse link 2 91,457,456 91,513,901 RGD:5509061
G Matn3 matrilin 3 JBrowse link 12 8,947,929 8,972,028 RGD:5509061
G Mia melanoma inhibitory activity JBrowse link 7 27,179,741 27,181,149 RGD:5509061
G Mia3 melanoma inhibitory activity 3 JBrowse link 1 183,326,236 183,369,565 RGD:5509061
G Mmp14 matrix metallopeptidase 14 (membrane-inserted) JBrowse link 14 54,431,598 54,442,456 RGD:5509061
G Mmp16 matrix metallopeptidase 16 JBrowse link 4 17,852,893 18,123,739 RGD:5509061
G Ncdn neurochondrin JBrowse link 4 126,743,750 126,753,765 RGD:5509061
G Npr2 natriuretic peptide receptor 2 JBrowse link 4 43,629,015 43,651,437 RGD:5509061
G Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 JBrowse link 19 32,595,669 32,667,187 RGD:5509061
G Prickle1 prickle planar cell polarity protein 1 JBrowse link 15 93,499,111 93,596,266 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Rbl1 RB transcriptional corepressor like 1 JBrowse link 2 157,145,893 157,204,534 RGD:5509061
G Rbl2 RB transcriptional corepressor like 2 JBrowse link 8 91,070,057 91,123,844 RGD:5509061
G Ror1 receptor tyrosine kinase-like orphan receptor 1 JBrowse link 4 100,095,791 100,444,806 RGD:5509061
G Ror2 receptor tyrosine kinase-like orphan receptor 2 JBrowse link 13 53,109,317 53,286,124 RGD:5509061
G Runx2 runt related transcription factor 2 JBrowse link 17 44,495,987 44,814,797 RGD:5509061
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 JBrowse link 7 99,345,375 99,353,239 RGD:5509061
G Smad3 SMAD family member 3 JBrowse link 9 63,646,766 63,757,994 RGD:5509061
G Sox5 SRY (sex determining region Y)-box 5 JBrowse link 6 143,828,425 144,782,287 RGD:5509061
G Sox6 SRY (sex determining region Y)-box 6 JBrowse link 7 115,470,872 116,040,776 RGD:5509061
G Spg20 spastic paraplegia 20, spartin (Troyer syndrome) homolog (human) JBrowse link 3 55,112,108 55,137,332 RGD:5509061
G Tgfb2 transforming growth factor, beta 2 JBrowse link 1 186,622,787 186,709,697 RGD:5509061
G Tgfb3 transforming growth factor, beta 3 JBrowse link 12 86,056,743 86,079,041 RGD:5509061
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 JBrowse link 14 78,277,446 78,308,043 RGD:5509061
G Trip11 thyroid hormone receptor interactor 11 JBrowse link 12 101,834,045 101,913,171 RGD:5509061
G Trps1 transcriptional repressor GATA binding 1 JBrowse link 15 50,654,757 50,890,631 RGD:5509061
G Vdr vitamin D (1,25-dihydroxyvitamin D3) receptor JBrowse link 15 97,854,427 97,908,296 RGD:5509061
abnormal chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bmpr1a bone morphogenetic protein receptor, type 1A JBrowse link 14 34,411,061 34,503,336 RGD:5509061
G Bmpr1b bone morphogenetic protein receptor, type 1B JBrowse link 3 141,837,135 142,169,585 RGD:5509061
G Chuk conserved helix-loop-helix ubiquitous kinase JBrowse link 19 44,073,334 44,107,505 RGD:5509061
G Col10a1 collagen, type X, alpha 1 JBrowse link 10 34,389,981 34,397,085 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Fam20c family with sequence similarity 20, member C JBrowse link 5 138,755,081 138,810,063 RGD:5509061
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 5 33,721,724 33,737,068 RGD:5509061
G Fosl2 fos-like antigen 2 JBrowse link 5 32,136,472 32,157,840 RGD:5509061
G Has2 hyaluronan synthase 2 JBrowse link 15 56,665,627 56,694,546 RGD:5509061
G Ihh Indian hedgehog JBrowse link 1 74,945,315 74,951,672 RGD:5509061
G Pfn1 profilin 1 JBrowse link 11 70,651,844 70,656,799 RGD:5509061
G Pth1r parathyroid hormone 1 receptor JBrowse link 9 110,722,085 110,747,145 RGD:5509061
G Pthlh parathyroid hormone-like peptide JBrowse link 6 147,252,109 147,264,013 RGD:5509061
G Runx1 runt related transcription factor 1 JBrowse link 16 92,601,466 92,826,074 RGD:5509061
G Runx2 runt related transcription factor 2 JBrowse link 17 44,495,987 44,814,797 RGD:5509061
G Scube2 signal peptide, CUB domain, EGF-like 2 JBrowse link 7 109,798,690 109,865,679 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Slc39a14 solute carrier family 39 (zinc transporter), member 14 JBrowse link 14 70,303,467 70,351,452 RGD:5509061
G Tnfsf11 tumor necrosis factor (ligand) superfamily, member 11 JBrowse link 14 78,277,446 78,308,043 RGD:5509061
decreased chondrocyte number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Creb3l2 cAMP responsive element binding protein 3-like 2 JBrowse link 6 37,327,255 37,442,276 RGD:5509061
G Fermt2 fermitin family member 2 JBrowse link 14 45,458,792 45,530,310 RGD:5509061
G Fgf23 fibroblast growth factor 23 JBrowse link 6 127,072,902 127,082,296 RGD:5509061
G Fgfr3 fibroblast growth factor receptor 3 JBrowse link 5 33,721,724 33,737,068 RGD:5509061
G Gdf5 growth differentiation factor 5 JBrowse link 2 155,941,023 155,945,367 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Gulo gulonolactone (L-) oxidase JBrowse link 14 65,986,786 66,009,254 RGD:5509061
G Has2 hyaluronan synthase 2 JBrowse link 15 56,665,627 56,694,546 RGD:5509061
G Irs1 insulin receptor substrate 1 JBrowse link 1 82,233,105 82,291,439 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G Msx2 msh homeobox 2 JBrowse link 13 53,466,881 53,472,780 RGD:5509061
G Nlrp3 NLR family, pyrin domain containing 3 JBrowse link 11 59,541,569 59,566,955 RGD:5509061
G Prg4 proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein) JBrowse link 1 150,449,412 150,466,221 RGD:5509061
G Pth1r parathyroid hormone 1 receptor JBrowse link 9 110,722,085 110,747,145 RGD:5509061
G Pthlh parathyroid hormone-like peptide JBrowse link 6 147,252,109 147,264,013 RGD:5509061
G Sik3 SIK family kinase 3 JBrowse link 9 46,012,820 46,224,194 RGD:5509061
G Sulf1 sulfatase 1 JBrowse link 1 12,692,197 12,861,192 RGD:5509061
G Sulf2 sulfatase 2 JBrowse link 2 166,073,899 166,155,683 RGD:5509061
G Tbx15 T-box 15 JBrowse link 3 99,240,348 99,354,260 RGD:5509061
G Xylt1 xylosyltransferase 1 JBrowse link 7 117,380,979 117,667,630 RGD:5509061
delayed chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cbfb core binding factor beta JBrowse link 8 105,170,674 105,217,989 RGD:5509061
G Chsy1 chondroitin sulfate synthase 1 JBrowse link 7 66,109,492 66,173,798 RGD:5509061
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 JBrowse link 6 84,571,414 84,593,908 RGD:5509061
G Disp1 dispatched RND transporter family member 1 JBrowse link 1 183,086,264 183,221,537 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Kdm6b KDM1 lysine (K)-specific demethylase 6B JBrowse link 11 69,398,508 69,420,367 RGD:5509061
G Pkdcc protein kinase domain containing, cytoplasmic JBrowse link 17 83,215,283 83,225,069 RGD:5509061
G Ror2 receptor tyrosine kinase-like orphan receptor 2 JBrowse link 13 53,109,317 53,286,124 RGD:5509061
increased chondrocyte number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Errfi1 ERBB receptor feedback inhibitor 1 JBrowse link 4 150,853,796 150,868,889 RGD:5509061
G Fgf9 fibroblast growth factor 9 JBrowse link 14 58,070,671 58,112,854 RGD:5509061
premature chondrocyte differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Asap1 ArfGAP with SH3 domain, ankyrin repeat and PH domain1 JBrowse link 15 64,086,840 64,382,941 RGD:5509061
G Egfr epidermal growth factor receptor JBrowse link 11 16,752,203 16,913,907 RGD:5509061
G Evc EvC ciliary complex subunit 1 JBrowse link 5 37,288,970 37,336,947 RGD:5509061
G Pbx1 pre B cell leukemia homeobox 1 JBrowse link 1 168,119,364 168,432,365 RGD:5509061
G Pth1r parathyroid hormone 1 receptor JBrowse link 9 110,722,085 110,747,145 RGD:5509061
G Rflna refilin A JBrowse link 5 125,003,448 125,012,547 RGD:5509061
G Rflnb refilin B JBrowse link 11 76,019,194 76,027,782 RGD:5509061

Term paths to the root
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Term Annotations click to browse term
  mammalian phenotype 14397
    skeleton phenotype 2832
      abnormal skeleton morphology 2655
        abnormal cartilage morphology 428
          abnormal chondrocyte morphology 105
            abnormal chondrocyte differentiation + 33
            decreased chondrocyte number + 20
            increased chondrocyte number 2
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.