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ONTOLOGY REPORT - ANNOTATIONS


Term:abnormal immune system morphology
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Accession:MP:0000685 term browser browse the term
Definition:any structural anomaly in the organs or cells associated with the development and formation of lymphocytes
Synonyms:exact_synonym: immune system abnormalities;   immune system dysplasia;   lymphoid system abnormalities;   lymphopoietic system abnormalities


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abnormal CD4-positive T cell differentiation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ptprk protein tyrosine phosphatase, receptor type, K JBrowse link 1 17,445,052 18,058,266 RGD:15036800
abnormal lymphocyte morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:13792708
G Fhem1 fumarate hydratase; TALEN induced mutant 1 RGD:13792708
abnormal spleen B cell follicle morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link 15 88,004,775 88,036,354 RGD:7207471
G Ednrbsl endothelin receptor type B, spotting lethal RGD:7207471
abnormal spleen development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link 15 88,004,775 88,036,354 RGD:7207471
G Ednrbsl endothelin receptor type B, spotting lethal RGD:7207471
absent mast cells term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kit KIT proto-oncogene receptor tyrosine kinase JBrowse link 14 35,072,131 35,149,638 RGD:5133424
G KitWs KIT proto-oncogene receptor tyrosine kinase; mutant 1 RGD:5133424
athymia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxn1 forkhead box N1 JBrowse link 10 65,621,142 65,634,666 RGD:1300512
decreased B cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd247 Cd247 molecule JBrowse link 13 83,996,045 84,071,408 RGD:13442481
G Cd247em1Mcwi Cd247 molecule; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:13442481
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:7204134
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:7204134
G Rag1em1Mcwi recombination activating gene 1; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:7207429
G Rag1em1Ztm recombination activating gene 1; zinc finger nuclease induced mutant 1, Zentrales Tierlaboratorium, Medizinische Hochschule Hannover RGD:7204131
decreased CD4-positive, alpha beta T cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
decreased CD8-positive, alpha-beta T cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
decreased eosinophil cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:13792708
G Fhem1 fumarate hydratase; TALEN induced mutant 1 RGD:13792708
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:13462048
G Lrrk2em1Sage leucine-rich repeat kinase 2; zinc finger nuclease induced mutant 1, Sigma Advanced Genetic Engineering Labs RGD:13462048
decreased leukocyte cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:13792708
G Fhem1 fumarate hydratase; TALEN induced mutant 1 RGD:13792708
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:2316325
decreased lymphocyte cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:13792708
G Fhem1 fumarate hydratase; TALEN induced mutant 1 RGD:13792708
G Lrrk2 leucine-rich repeat kinase 2 JBrowse link 7 132,857,311 133,018,549 RGD:13462048
G Lrrk2em1Sage leucine-rich repeat kinase 2; zinc finger nuclease induced mutant 1, Sigma Advanced Genetic Engineering Labs RGD:13462048
decreased mature B cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
decreased microglial cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:12879399
G Atmem1Kyo ATM serine/threonine kinase; ZFN induced mutant 1, Kyo RGD:12879399
decreased monocyte cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cd247 Cd247 molecule JBrowse link 13 83,996,045 84,071,408 RGD:13442481
G Cd247em1Mcwi Cd247 molecule; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:13442481
G Fh fumarate hydratase JBrowse link 13 93,651,486 93,677,371 RGD:13792708
G Fhem1 fumarate hydratase; TALEN induced mutant 1 RGD:13792708
decreased NK cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:12910490
G Il15em1Soar interleukin 15; ZFN induced mutant 1, Soar RGD:12910490
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
decreased spleen red pulp amount term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link 15 88,004,775 88,036,354 RGD:7207471
G Ednrbsl endothelin receptor type B, spotting lethal RGD:7207471
decreased spleen weight term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il15 interleukin 15 JBrowse link 19 23,542,606 23,624,366 RGD:12910490
G Il15em1Soar interleukin 15; ZFN induced mutant 1, Soar RGD:12910490
decreased T cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:12879393
G Atmm1Kyo ATM serine/threonine kinase; ENU induced mutant 1, Kyo RGD:12879393
G Cd247 Cd247 molecule JBrowse link 13 83,996,045 84,071,408 RGD:13442481
G Cd247em1Mcwi Cd247 molecule; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:13442481
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:11566051
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Lepem1Sage leptin; zinc finger nuclease induced mutant1, Sage RGD:12904911
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:7204134
RGD:7207429
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:7204134
G Rag1em1Mcwi recombination activating gene 1; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:7207429
G Rag1em1Ztm recombination activating gene 1; zinc finger nuclease induced mutant 1, Zentrales Tierlaboratorium, Medizinische Hochschule Hannover RGD:7204131
decreased thymocyte number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
decreased thymus weight term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link 15 88,004,775 88,036,354 RGD:7207471
G Ednrbsl endothelin receptor type B, spotting lethal RGD:7207471
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:7207429
G Rag1em1Mcwi recombination activating gene 1; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:7207429
G Rag1em2Mcwi recombination activating gene 1; zinc finger nuclease induced mutant 2, Medical College of Wisconsin RGD:7207429
increased double-positive T cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:12879393
G Atmm1Kyo ATM serine/threonine kinase; ENU induced mutant 1, Kyo RGD:12879393
increased leukocyte cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G F8em1Sage coagulation factor VIII, procoagulant component; zinc finger nuclease induced mutant1, Sage RGD:11530071
G P2ry2 purinergic receptor P2Y2 JBrowse link 1 166,031,228 166,045,423 RGD:2316657
increased lymphocyte cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G P2ry2 purinergic receptor P2Y2 JBrowse link 1 166,031,228 166,045,423 RGD:2316657
G Sh2b3 SH2B adaptor protein 3 JBrowse link 12 40,261,990 40,265,757 RGD:12904914
G Sh2b3em2Mcwi SH2B adaptor protein 3; zinc finger nuclease induced mutant 2, Medical College of Wisconsin RGD:12904914
increased monocyte cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sh2b3 SH2B adaptor protein 3 JBrowse link 12 40,261,990 40,265,757 RGD:12904914
G Sh2b3em2Mcwi SH2B adaptor protein 3; zinc finger nuclease induced mutant 2, Medical College of Wisconsin RGD:12904914
increased neutrophil cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cftr CF transmembrane conductance regulator JBrowse link 4 42,693,263 42,860,679 RGD:11566051
G P2ry2 purinergic receptor P2Y2 JBrowse link 1 166,031,228 166,045,423 RGD:2316657
G Sh2b3 SH2B adaptor protein 3 JBrowse link 12 40,261,990 40,265,757 RGD:12904914
G Sh2b3em2Mcwi SH2B adaptor protein 3; zinc finger nuclease induced mutant 2, Medical College of Wisconsin RGD:12904914
increased regulatory T cell number term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Sh2b3 SH2B adaptor protein 3 JBrowse link 12 40,261,990 40,265,757 RGD:13442483
G Sh2b3em1Mcwi SH2B adaptor protein 3; zinc finger nuclease induced mutant 1, Medical College of Wisconsin RGD:13442483
lymph node hypoplasia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:13628403
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
microgliosis term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:12879399
G Atmem1Kyo ATM serine/threonine kinase; ZFN induced mutant 1, Kyo RGD:12879399
small lymph nodes term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:7204134
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:7204134
small spleen term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ednrb endothelin receptor type B JBrowse link 15 88,004,775 88,036,354 RGD:7207471
G Ednrbsl endothelin receptor type B, spotting lethal RGD:7207471
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:7204134
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:7204134
small thymus term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp11b2 cytochrome P450, family 11, subfamily b, polypeptide 2 JBrowse link 7 116,248,759 116,255,205 RGD:727991
G Rag1 recombination activating 1 JBrowse link 3 91,206,394 91,217,491 RGD:7204134
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:7204134
G Rag1em1Ztm recombination activating gene 1; zinc finger nuclease induced mutant 1, Zentrales Tierlaboratorium, Medizinische Hochschule Hannover RGD:7204131
spleen hypoplasia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:2316325
G Il2rgem1Ang interleukin 2 receptor subunit gamma;TALEN induced mutant1, Ang RGD:13628403
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:8696027
G Rag1em1Ang recombination activating gene 1; zinc finger nuclease induced mutant 1, Ignacio Anegon RGD:13628403
thymus hypoplasia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Il2rg interleukin 2 receptor subunit gamma JBrowse link X 71,165,378 71,169,078 RGD:2316325
G Prkdc protein kinase, DNA-activated, catalytic subunit JBrowse link 11 89,293,547 89,510,948 RGD:8696027

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  mammalian phenotype 4934
    immune system phenotype 413
      abnormal immune system morphology 118
        abnormal immune system cell morphology + 97
        abnormal immune system organ morphology + 42
        abnormal lymphatic vessel morphology + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.