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ONTOLOGY REPORT - ANNOTATIONS


Term:abnormal neural tube closure
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Accession:MP:0003720 term browser browse the term
Definition:any anomaly in the last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline
Synonyms:exact_synonym: abnormal neural fold fusion;   abnormal neural tube fusion


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abnormal neural tube closure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acvr1b activin A receptor, type 1B JBrowse link 15 101,174,072 101,213,684 RGD:5509061
G Adar adenosine deaminase, RNA-specific JBrowse link 3 89,714,469 89,753,455 RGD:5509061
G Alg10b asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase) JBrowse link 15 90,224,311 90,230,554 RGD:5509061
G Alkbh1 alkB homolog 1, histone H2A dioxygenase JBrowse link 12 87,428,077 87,443,839 RGD:5509061
G Anapc15 anaphase promoting complex C subunit 15 JBrowse link 7 101,881,300 101,901,849 RGD:5509061
G Ap1g1 adaptor protein complex AP-1, gamma 1 subunit JBrowse link 8 109,778,583 109,864,210 RGD:5509061
G Arhgap35 Rho GTPase activating protein 35 JBrowse link 7 16,494,473 16,614,993 RGD:5509061
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 10 53,596,961 53,609,225 RGD:5509061
G Bbox1 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) JBrowse link 2 110,264,056 110,314,813 RGD:5509061
G Bmp4 bone morphogenetic protein 4 JBrowse link 14 46,383,525 46,390,669 RGD:5509061
G Brd2 bromodomain containing 2 JBrowse link 17 34,112,019 34,122,814 RGD:5509061
G Casp9 caspase 9 JBrowse link 4 141,793,612 141,815,978 RGD:5509061
G Ccnf cyclin F JBrowse link 17 24,223,230 24,251,409 RGD:5509061
G Cdk8 cyclin-dependent kinase 8 JBrowse link 5 146,230,795 146,302,874 RGD:5509061
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 6 120,666,314 120,771,191 RGD:5509061
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 JBrowse link 15 85,898,758 86,034,223 RGD:5509061
G Cer1 cerberus 1, DAN family BMP antagonist JBrowse link 4 82,881,751 82,885,151 RGD:5509061
G Cgn cingulin JBrowse link 3 94,760,069 94,787,725 RGD:5509061
G Cnot10 CCR4-NOT transcription complex, subunit 10 JBrowse link 9 114,585,874 114,640,220 RGD:5509061
G Coq6 coenzyme Q6 monooxygenase JBrowse link 12 84,361,756 84,373,796 RGD:5509061
G Cox4i1 cytochrome c oxidase subunit 4I1 JBrowse link 8 120,668,225 120,674,209 RGD:5509061
G Crybg1 crystallin beta-gamma domain containing 1 JBrowse link 10 43,950,307 44,148,828 RGD:5509061
G Csk c-src tyrosine kinase JBrowse link 9 57,626,646 57,653,631 RGD:5509061
G Csnk2a1 casein kinase 2, alpha 1 polypeptide JBrowse link 2 152,226,535 152,281,856 RGD:5509061
G Ctbp1 C-terminal binding protein 1 JBrowse link 5 33,247,723 33,275,004 RGD:5509061
G Ctbp2 C-terminal binding protein 2 JBrowse link 7 132,986,998 133,124,009 RGD:5509061
G Cthrc1 collagen triple helix repeat containing 1 JBrowse link 15 39,076,932 39,087,121 RGD:5509061
G Ddost dolichyl-di-phosphooligosaccharide-protein glycotransferase JBrowse link 4 138,304,738 138,312,619 RGD:5509061
G Ddx3x DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked JBrowse link X 13,280,496 13,293,988 RGD:5509061
G Dhx29 DEAH (Asp-Glu-Ala-His) box polypeptide 29 JBrowse link 13 112,927,680 112,969,432 RGD:5509061
G Dnaaf2 dynein, axonemal assembly factor 2 JBrowse link 12 69,189,087 69,200,083 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Efna5 ephrin A5 JBrowse link 17 62,602,957 62,881,317 RGD:5509061
G Egr1 early growth response 1 JBrowse link 18 34,861,207 34,864,956 RGD:5509061
G Epcam epithelial cell adhesion molecule JBrowse link 17 87,635,979 87,651,127 RGD:5509061
G Fadd Fas (TNFRSF6)-associated via death domain JBrowse link 7 144,578,323 144,582,441 RGD:5509061
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Flrt3 fibronectin leucine rich transmembrane protein 3 JBrowse link 2 140,658,198 140,671,476 RGD:5509061
G Folr1 folate receptor 1 (adult) JBrowse link 7 101,858,331 101,870,788 RGD:5509061
G Fuz fuzzy planar cell polarity protein JBrowse link 7 44,894,305 44,900,624 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Greb1l growth regulation by estrogen in breast cancer-like JBrowse link 18 10,324,933 10,562,945 RGD:5509061
G Grhl2 grainyhead like transcription factor 2 JBrowse link 15 37,232,821 37,363,569 RGD:5509061
G Grhl3 grainyhead like transcription factor 3 JBrowse link 4 135,541,887 135,573,632 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Ift43 intraflagellar transport 43 JBrowse link 12 86,082,561 86,162,459 RGD:5509061
G Inpp5e inositol polyphosphate-5-phosphatase E JBrowse link 2 26,396,249 26,409,244 RGD:5509061
G Ints10 integrator complex subunit 10 JBrowse link 8 68,793,929 68,829,410 RGD:5509061
G Itga3 integrin alpha 3 JBrowse link 11 95,044,475 95,076,844 RGD:5509061
G Itga6 integrin alpha 6 JBrowse link 2 71,786,886 71,858,427 RGD:5509061
G Itpk1 inositol 1,3,4-triphosphate 5/6 kinase JBrowse link 12 102,568,583 102,704,869 RGD:5509061
G Jarid2 jumonji, AT rich interactive domain 2 JBrowse link 13 44,730,774 44,921,643 RGD:5509061
G Junb jun B proto-oncogene JBrowse link 8 84,976,909 84,978,748 RGD:5509061
G Kat2a K(lysine) acetyltransferase 2A JBrowse link 11 100,704,746 100,712,485 RGD:5509061
G Kdm6a lysine (K)-specific demethylase 6A JBrowse link X 18,160,862 18,279,936 RGD:5509061
G Kif3a kinesin family member 3A JBrowse link 11 53,565,701 53,604,248 RGD:5509061
G Lamc1 laminin, gamma 1 JBrowse link 1 153,218,922 153,332,786 RGD:5509061
G Laptm4b lysosomal-associated protein transmembrane 4B JBrowse link 15 34,238,026 34,284,295 RGD:5509061
G Lmo4 LIM domain only 4 JBrowse link 3 144,188,530 144,205,255 RGD:5509061
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:5509061
G Mdm4 transformed mouse 3T3 cell double minute 4 JBrowse link 1 132,986,105 133,030,587 RGD:5509061
G Med1 mediator complex subunit 1 JBrowse link 11 98,152,154 98,193,313 RGD:5509061
G Men1 multiple endocrine neoplasia 1 JBrowse link 19 6,334,979 6,340,894 RGD:5509061
G Mthfd1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase JBrowse link 12 76,254,406 76,319,820 RGD:5509061
G Mvk mevalonate kinase JBrowse link 5 114,444,264 114,460,591 RGD:5509061
G Nat2 N-acetyltransferase 2 (arylamine N-acetyltransferase) JBrowse link 8 67,494,875 67,502,644 RGD:5509061
G Nog noggin JBrowse link 11 89,300,638 89,302,559 RGD:5509061
G Nr2c2 nuclear receptor subfamily 2, group C, member 2 JBrowse link 6 92,091,418 92,173,058 RGD:5509061
G Nr6a1 nuclear receptor subfamily 6, group A, member 1 JBrowse link 2 38,723,369 38,926,461 RGD:5509061
G Pax2 paired box 2 JBrowse link 19 44,746,601 44,838,269 RGD:5509061
G Pcgf1 polycomb group ring finger 1 JBrowse link 6 83,077,552 83,080,855 RGD:5509061
G Pcsk5 proprotein convertase subtilisin/kexin type 5 JBrowse link 19 17,432,314 17,837,712 RGD:5509061
G Pibf1 progesterone immunomodulatory binding factor 1 JBrowse link 14 99,099,424 99,254,899 RGD:5509061
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q JBrowse link 17 25,926,420 25,942,881 RGD:5509061
G Plagl1 pleiomorphic adenoma gene-like 1 JBrowse link 10 13,090,832 13,131,694 RGD:5509061
G Pnpla6 patatin-like phospholipase domain containing 6 JBrowse link 8 3,515,235 3,544,267 RGD:5509061
G Psmg1 proteasome (prosome, macropain) assembly chaperone 1 JBrowse link 16 95,979,933 95,990,960 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:5509061
G Rac1 Rac family small GTPase 1 JBrowse link 5 143,505,481 143,528,031 RGD:5509061
G Rad9a RAD9 checkpoint clamp component A JBrowse link 19 4,195,196 4,201,672 RGD:5509061
G Ranbp1 RAN binding protein 1 JBrowse link 16 18,239,979 18,248,694 RGD:5509061
G Rc3h1 RING CCCH (C3H) domains 1 JBrowse link 1 160,906,411 160,974,976 RGD:5509061
G Rnaseh2b ribonuclease H2, subunit B JBrowse link 14 62,332,068 62,372,996 RGD:5509061
G Scrib scribbled planar cell polarity JBrowse link 15 76,047,162 76,069,784 RGD:5509061
G Scube1 signal peptide, CUB domain, EGF-like 1 JBrowse link 15 83,602,583 83,725,051 RGD:5509061
G Slc25a1 solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1 JBrowse link 16 17,925,211 17,928,219 RGD:5509061
G Slc25a3 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3 JBrowse link 10 91,116,574 91,124,046 RGD:5509061
G Slc25a32 solute carrier family 25, member 32 JBrowse link 15 39,091,230 39,112,720 RGD:5509061
G Slc35b4 solute carrier family 35, member B4 JBrowse link 6 34,155,872 34,177,054 RGD:5509061
G Slc39a4 solute carrier family 39 (zinc transporter), member 4 JBrowse link 15 76,612,383 76,618,506 RGD:5509061
G Slc40a1 solute carrier family 40 (iron-regulated transporter), member 1 JBrowse link 1 45,908,070 45,926,532 RGD:5509061
G Snx3 sorting nexin 3 JBrowse link 10 42,502,054 42,535,369 RGD:5509061
G Specc1l sperm antigen with calponin homology and coiled-coil domains 1-like JBrowse link 10 75,212,037 75,312,400 RGD:5509061
G Spint2 serine protease inhibitor, Kunitz type 2 JBrowse link 7 29,256,330 29,282,059 RGD:5509061
G Sptan1 spectrin alpha, non-erythrocytic 1 JBrowse link 2 29,965,560 30,031,451 RGD:5509061
G Srd5a3 steroid 5 alpha-reductase 3 JBrowse link 5 76,140,273 76,155,503 RGD:5509061
G Stk11 serine/threonine kinase 11 JBrowse link 10 80,115,767 80,130,679 RGD:5509061
G Strap serine/threonine kinase receptor associated protein JBrowse link 6 137,735,082 137,751,930 RGD:5509061
G Sufu SUFU negative regulator of hedgehog signaling JBrowse link 19 46,396,896 46,488,804 RGD:5509061
G Tbx4 T-box 4 JBrowse link 11 85,886,367 85,916,097 RGD:5509061
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 10 62,804,570 62,887,469 RGD:5509061
G Tfap2a transcription factor AP-2, alpha JBrowse link 13 40,713,802 40,738,238 RGD:5509061
G Tm2d3 TM2 domain containing 3 JBrowse link 7 65,693,417 65,701,913 RGD:5509061
G Tmem100 transmembrane protein 100 JBrowse link 11 90,030,348 90,036,508 RGD:5509061
G Tmem107 transmembrane protein 107 JBrowse link 11 69,070,809 69,073,293 RGD:5509061
G Tmem132a transmembrane protein 132A JBrowse link 19 10,857,829 10,870,205 RGD:5509061
G Tonsl tonsoku-like, DNA repair protein JBrowse link 15 76,626,237 76,639,929 RGD:5509061
G Tpk1 thiamine pyrophosphokinase JBrowse link 6 43,339,576 43,667,792 RGD:5509061
G Trim28 tripartite motif-containing 28 JBrowse link 7 13,024,152 13,031,032 RGD:5509061
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:5509061
G Trpm6 transient receptor potential cation channel, subfamily M, member 6 JBrowse link 19 18,730,177 18,892,521 RGD:5509061
G Uhrf1 ubiquitin-like, containing PHD and RING finger domains, 1 JBrowse link 17 56,303,337 56,323,486 RGD:5509061
G Utp4 UTP4 small subunit processome component JBrowse link 8 106,893,640 106,923,094 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
G Vcl vinculin JBrowse link 14 20,929,383 21,033,676 RGD:5509061
G Xrcc2 X-ray repair complementing defective repair in Chinese hamster cells 2 JBrowse link 5 25,689,814 25,705,797 RGD:5509061
G Znrf3 zinc and ring finger 3 JBrowse link 11 5,276,329 5,444,847 RGD:5509061
delayed caudal neuropore closure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chrna7 cholinergic receptor, nicotinic, alpha polypeptide 7 JBrowse link 7 63,098,692 63,212,526 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Zic2 zinc finger protein of the cerebellum 2 JBrowse link 14 122,475,384 122,480,328 RGD:5509061
delayed neural tube closure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase JBrowse link 2 31,688,244 31,807,093 RGD:5509061
G Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) JBrowse link 1 156,558,590 156,649,619 RGD:5509061
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 10 90,989,311 91,082,743 RGD:5509061
G Cecr2 CECR2, histone acetyl-lysine reader JBrowse link 6 120,666,314 120,771,191 RGD:5509061
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 JBrowse link 15 85,898,758 86,034,223 RGD:5509061
G Csk c-src tyrosine kinase JBrowse link 9 57,626,646 57,653,631 RGD:5509061
G Epcam epithelial cell adhesion molecule JBrowse link 17 87,635,979 87,651,127 RGD:5509061
G Gen1 GEN1, Holliday junction 5' flap endonuclease JBrowse link 12 11,238,928 11,266,029 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Glmn glomulin, FKBP associated protein JBrowse link 5 107,548,962 107,597,888 RGD:5509061
G Grhl2 grainyhead like transcription factor 2 JBrowse link 15 37,232,821 37,363,569 RGD:5509061
G Grhl3 grainyhead like transcription factor 3 JBrowse link 4 135,541,887 135,573,632 RGD:5509061
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Jarid2 jumonji, AT rich interactive domain 2 JBrowse link 13 44,730,774 44,921,643 RGD:5509061
G Kdm2a lysine (K)-specific demethylase 2A JBrowse link 19 4,316,144 4,398,721 RGD:5509061
G Lrp2 low density lipoprotein receptor-related protein 2 JBrowse link 2 69,424,335 69,586,029 RGD:5509061
G Mdfi MyoD family inhibitor JBrowse link 17 47,815,328 47,834,691 RGD:5509061
G Mesp1 mesoderm posterior 1 JBrowse link 7 79,792,241 79,793,590 RGD:5509061
G Pax2 paired box 2 JBrowse link 19 44,746,601 44,838,269 RGD:5509061
G Pax3 paired box 3 JBrowse link 1 78,101,267 78,197,136 RGD:5509061
G Prickle1 prickle planar cell polarity protein 1 JBrowse link 15 93,499,111 93,596,266 RGD:5509061
G Psen1 presenilin 1 JBrowse link 12 83,688,152 83,735,095 RGD:5509061
G Psen2 presenilin 2 JBrowse link 1 180,227,004 180,263,467 RGD:5509061
G Rax retina and anterior neural fold homeobox JBrowse link 18 65,934,639 65,939,089 RGD:5509061
G Rybp RING1 and YY1 binding protein JBrowse link 6 100,228,565 100,287,358 RGD:5509061
G Serpinh1 serine (or cysteine) peptidase inhibitor, clade H, member 1 JBrowse link 7 99,345,375 99,353,239 RGD:5509061
G Slc31a1 solute carrier family 31, member 1 JBrowse link 4 62,360,583 62,391,769 RGD:5509061
G Smad5 SMAD family member 5 JBrowse link 13 56,703,010 56,742,378 RGD:5509061
G Stil Scl/Tal1 interrupting locus JBrowse link 4 115,000,108 115,043,203 RGD:5509061
G Tcof1 treacle ribosome biogenesis factor 1 JBrowse link 18 60,813,738 60,848,983 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
G Zic3 zinc finger protein of the cerebellum 3 JBrowse link X 58,030,628 58,036,630 RGD:5509061
delayed rostral neuropore closure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Folr1 folate receptor 1 (adult) JBrowse link 7 101,858,331 101,870,788 RGD:5509061
G Tmem70 transmembrane protein 70 JBrowse link 1 16,665,191 16,678,275 RGD:5509061
diastematomyelia term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 11 79,993,106 80,034,123 RGD:5509061
incomplete caudal neuropore closure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 JBrowse link 9 71,215,789 71,296,243 RGD:5509061
G Csk c-src tyrosine kinase JBrowse link 9 57,626,646 57,653,631 RGD:5509061
G Grhl2 grainyhead like transcription factor 2 JBrowse link 15 37,232,821 37,363,569 RGD:5509061
G Mgat1 mannoside acetylglucosaminyltransferase 1 JBrowse link 11 49,244,191 49,263,027 RGD:5509061
G Msgn1 mesogenin 1 JBrowse link 12 11,208,382 11,208,948 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:5509061
G Sp8 trans-acting transcription factor 8 JBrowse link 12 118,846,288 118,852,578 RGD:5509061
G T brachyury, T-box transcription factor T JBrowse link 17 8,434,423 8,442,496 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
incomplete rostral neuropore closure term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G a nonagouti JBrowse link 2 154,950,599 155,051,012 RGD:5509061
G Adnp activity-dependent neuroprotective protein JBrowse link 2 168,180,965 168,207,112 RGD:5509061
G Amt aminomethyltransferase JBrowse link 9 108,296,905 108,302,302 RGD:5509061
G Arhgap35 Rho GTPase activating protein 35 JBrowse link 7 16,494,473 16,614,993 RGD:5509061
G Bmp2 bone morphogenetic protein 2 JBrowse link 2 133,552,159 133,562,896 RGD:5509061
G Calr calreticulin JBrowse link 8 84,842,088 84,846,931 RGD:5509061
G Cc2d2a coiled-coil and C2 domain containing 2A JBrowse link 5 43,662,374 43,740,975 RGD:5509061
G Ccdc160 coiled-coil domain containing 160 JBrowse link X 52,791,200 52,799,474 RGD:5509061
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 JBrowse link 15 85,898,758 86,034,223 RGD:5509061
G Crebbp CREB binding protein JBrowse link 16 4,081,334 4,213,957 RGD:5509061
G Csk c-src tyrosine kinase JBrowse link 9 57,626,646 57,653,631 RGD:5509061
G Csnk2a1 casein kinase 2, alpha 1 polypeptide JBrowse link 2 152,226,535 152,281,856 RGD:5509061
G Dnmt3b DNA methyltransferase 3B JBrowse link 2 153,649,411 153,687,730 RGD:5509061
G Dvl3 dishevelled segment polarity protein 3 JBrowse link 16 20,516,949 20,534,013 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Efna5 ephrin A5 JBrowse link 17 62,602,957 62,881,317 RGD:5509061
G Elp1 elongator complex protein 1 JBrowse link 4 56,746,547 56,802,569 RGD:5509061
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 6 124,704,370 124,712,186 RGD:5509061
G Enah ENAH actin regulator JBrowse link 1 181,896,384 182,027,556 RGD:5509061
G F2r coagulation factor II (thrombin) receptor JBrowse link 13 95,601,780 95,618,466 RGD:5509061
G F2rl1 coagulation factor II (thrombin) receptor-like 1 JBrowse link 13 95,511,718 95,525,240 RGD:5509061
G Fdft1 farnesyl diphosphate farnesyl transferase 1 JBrowse link 14 63,145,150 63,181,687 RGD:5509061
G Flrt3 fibronectin leucine rich transmembrane protein 3 JBrowse link 2 140,658,198 140,671,476 RGD:5509061
G Folr1 folate receptor 1 (adult) JBrowse link 7 101,858,331 101,870,788 RGD:5509061
G Foxc1 forkhead box C1 JBrowse link 13 31,806,646 31,810,635 RGD:5509061
G Foxc2 forkhead box C2 JBrowse link 8 121,116,171 121,118,895 RGD:5509061
G Fzd3 frizzled class receptor 3 JBrowse link 14 65,192,441 65,262,463 RGD:5509061
G Gas2l2 growth arrest-specific 2 like 2 JBrowse link 11 83,421,635 83,429,521 RGD:5509061
G Gcm2 glial cells missing homolog 2 JBrowse link 13 41,101,427 41,111,035 RGD:5509061
G Gldc glycine decarboxylase JBrowse link 19 30,098,441 30,175,441 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Grhl2 grainyhead like transcription factor 2 JBrowse link 15 37,232,821 37,363,569 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hes1 hes family bHLH transcription factor 1 JBrowse link 16 30,065,357 30,067,796 RGD:5509061
G Hhip Hedgehog-interacting protein JBrowse link 8 79,965,850 80,058,060 RGD:5509061
G Hus1 HUS1 checkpoint clamp component JBrowse link 11 8,993,137 9,011,236 RGD:5509061
G Ift46 intraflagellar transport 46 JBrowse link 9 44,770,456 44,792,714 RGD:5509061
G Ift57 intraflagellar transport 57 JBrowse link 16 49,699,294 49,765,126 RGD:5509061
G Jarid2 jumonji, AT rich interactive domain 2 JBrowse link 13 44,730,774 44,921,643 RGD:5509061
G Kat2a K(lysine) acetyltransferase 2A JBrowse link 11 100,704,746 100,712,485 RGD:5509061
G Kdm2b lysine (K)-specific demethylase 2B JBrowse link 5 122,870,664 122,989,270 RGD:5509061
G Lama5 laminin, alpha 5 JBrowse link 2 180,176,373 180,225,904 RGD:5509061
G Lmo4 LIM domain only 4 JBrowse link 3 144,188,530 144,205,255 RGD:5509061
G Luzp1 leucine zipper protein 1 JBrowse link 4 136,462,609 136,554,725 RGD:5509061
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 14 33,377,898 33,447,353 RGD:5509061
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 11 49,846,728 49,886,421 RGD:5509061
G Mgat1 mannoside acetylglucosaminyltransferase 1 JBrowse link 11 49,244,191 49,263,027 RGD:5509061
G Mks1 Meckel syndrome, type 1 JBrowse link 11 87,853,182 87,863,803 RGD:5509061
G Mttp microsomal triglyceride transfer protein JBrowse link 3 138,089,855 138,143,418 RGD:5509061
G Nck1 non-catalytic region of tyrosine kinase adaptor protein 1 JBrowse link 9 100,494,302 100,546,134 RGD:5509061
G Nck2 non-catalytic region of tyrosine kinase adaptor protein 2 JBrowse link 1 43,445,483 43,570,518 RGD:5509061
G Nog noggin JBrowse link 11 89,300,638 89,302,559 RGD:5509061
G Nr6a1 nuclear receptor subfamily 6, group A, member 1 JBrowse link 2 38,723,369 38,926,461 RGD:5509061
G Patz1 POZ (BTB) and AT hook containing zinc finger 1 JBrowse link 11 3,289,131 3,309,083 RGD:5509061
G Pax2 paired box 2 JBrowse link 19 44,746,601 44,838,269 RGD:5509061
G Pax3 paired box 3 JBrowse link 1 78,101,267 78,197,136 RGD:5509061
G Pdgfra platelet derived growth factor receptor, alpha polypeptide JBrowse link 5 75,151,322 75,198,206 RGD:5509061
G Pfn1 profilin 1 JBrowse link 11 70,651,844 70,656,799 RGD:5509061
G Pip5k1c phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma JBrowse link 10 81,292,835 81,319,974 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Por P450 (cytochrome) oxidoreductase JBrowse link 5 135,670,040 135,735,326 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Rere arginine glutamic acid dipeptide (RE) repeats JBrowse link 4 150,281,511 150,621,966 RGD:5509061
G Rgma repulsive guidance molecule family member A JBrowse link 7 73,375,520 73,419,899 RGD:5509061
G Rpl38 ribosomal protein L38 JBrowse link 11 114,667,818 114,672,333 RGD:5509061
G Sall2 spalt like transcription factor 2 JBrowse link 14 52,311,177 52,328,670 RGD:5509061
G Sall4 spalt like transcription factor 4 JBrowse link 2 168,748,332 168,767,201 RGD:5509061
G Slc25a32 solute carrier family 25, member 32 JBrowse link 15 39,091,230 39,112,720 RGD:5509061
G Smad1 SMAD family member 1 JBrowse link 8 79,338,395 79,399,428 RGD:5509061
G Smad5 SMAD family member 5 JBrowse link 13 56,703,010 56,742,378 RGD:5509061
G Snx1 sorting nexin 1 JBrowse link 9 66,088,127 66,124,886 RGD:5509061
G Snx2 sorting nexin 2 JBrowse link 18 53,176,292 53,220,866 RGD:5509061
G Sox11 SRY (sex determining region Y)-box 11 JBrowse link 12 27,334,268 27,342,718 RGD:5509061
G Sox4 SRY (sex determining region Y)-box 4 JBrowse link 13 28,948,919 28,953,699 RGD:5509061
G Sp8 trans-acting transcription factor 8 JBrowse link 12 118,846,288 118,852,578 RGD:5509061
G Sphk1 sphingosine kinase 1 JBrowse link 11 116,530,836 116,536,675 RGD:5509061
G Sphk2 sphingosine kinase 2 JBrowse link 7 45,709,463 45,718,002 RGD:5509061
G Tead1 TEA domain family member 1 JBrowse link 7 112,679,356 112,906,784 RGD:5509061
G Tead2 TEA domain family member 2 JBrowse link 7 45,215,753 45,233,636 RGD:5509061
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 10 62,804,570 62,887,469 RGD:5509061
G Tfap2a transcription factor AP-2, alpha JBrowse link 13 40,713,802 40,738,238 RGD:5509061
G Tgif1 TGFB-induced factor homeobox 1 JBrowse link 17 70,844,205 70,853,532 RGD:5509061
G Tgif2 TGFB-induced factor homeobox 2 JBrowse link 2 156,839,817 156,855,570 RGD:5509061
G Tmem67 transmembrane protein 67 JBrowse link 4 12,039,355 12,090,020 RGD:5509061
G Trim33 tripartite motif-containing 33 JBrowse link 3 103,279,293 103,358,770 RGD:5509061
G Trim71 tripartite motif-containing 71 JBrowse link 9 114,511,268 114,564,369 RGD:5509061
G Tsc2 TSC complex subunit 2 JBrowse link 17 24,595,816 24,632,676 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
G Txn2 thioredoxin 2 JBrowse link 15 77,915,051 77,928,994 RGD:5509061
G Unc5b unc-5 netrin receptor B JBrowse link 10 60,762,594 60,831,581 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
G Vcl vinculin JBrowse link 14 20,929,383 21,033,676 RGD:5509061
G Zfp568 zinc finger protein 568 JBrowse link 7 29,983,955 30,028,282 RGD:5509061
G Zic2 zinc finger protein of the cerebellum 2 JBrowse link 14 122,475,384 122,480,328 RGD:5509061
meningomyelocele term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Foxc2 forkhead box C2 JBrowse link 8 121,116,171 121,118,895 RGD:5509061
G Grhl3 grainyhead like transcription factor 3 JBrowse link 4 135,541,887 135,573,632 RGD:5509061
G Itpk1 inositol 1,3,4-triphosphate 5/6 kinase JBrowse link 12 102,568,583 102,704,869 RGD:5509061
G Pax1 paired box 1 JBrowse link 2 147,361,930 147,375,049 RGD:5509061
G Ptpn9 protein tyrosine phosphatase, non-receptor type 9 JBrowse link 9 56,994,968 57,062,808 RGD:5509061
G T brachyury, T-box transcription factor T JBrowse link 17 8,434,423 8,442,496 RGD:5509061
G Tmem67 transmembrane protein 67 JBrowse link 4 12,039,355 12,090,020 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
myelocele term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brd2 bromodomain containing 2 JBrowse link 17 34,112,019 34,122,814 RGD:5509061
G Chtop chromatin target of PRMT1 JBrowse link 3 90,498,539 90,509,527 RGD:5509061
open neural tube term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abi1 abl-interactor 1 JBrowse link 2 22,940,073 23,040,241 RGD:5509061
G Ago2 argonaute RISC catalytic subunit 2 JBrowse link 15 73,101,625 73,184,947 RGD:5509061
G Alx1 ALX homeobox 1 JBrowse link 10 103,007,847 103,029,549 RGD:5509061
G Alx3 aristaless-like homeobox 3 JBrowse link 3 107,595,031 107,605,875 RGD:5509061
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 10 90,989,311 91,082,743 RGD:5509061
G Arid1a AT rich interactive domain 1A (SWI-like) JBrowse link 4 133,679,008 133,756,769 RGD:5509061
G Atp2c1 ATPase, Ca++-sequestering JBrowse link 9 105,411,362 105,521,257 RGD:5509061
G Axin2 axin 2 JBrowse link 11 108,917,828 108,950,783 RGD:5509061
G Bard1 BRCA1 associated RING domain 1 JBrowse link 1 71,027,535 71,103,141 RGD:5509061
G Bcl10 B cell leukemia/lymphoma 10 JBrowse link 3 145,924,262 145,934,366 RGD:5509061
G Bmp2 bone morphogenetic protein 2 JBrowse link 2 133,552,159 133,562,896 RGD:5509061
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:5509061
G Brca2 breast cancer 2, early onset JBrowse link 5 150,522,297 150,570,147 RGD:5509061
G Brd1 bromodomain containing 1 JBrowse link 15 88,687,034 88,734,228 RGD:5509061
G Ccdc160 coiled-coil domain containing 160 JBrowse link X 52,791,200 52,799,474 RGD:5509061
G Cdk20 cyclin-dependent kinase 20 JBrowse link 13 64,432,319 64,439,722 RGD:5509061
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 JBrowse link 15 85,898,758 86,034,223 RGD:5509061
G Cer1 cerberus 1, DAN family BMP antagonist JBrowse link 4 82,881,751 82,885,151 RGD:5509061
G Cfl1 cofilin 1, non-muscle JBrowse link 19 5,490,455 5,494,031 RGD:5509061
G Chuk conserved helix-loop-helix ubiquitous kinase JBrowse link 19 44,073,334 44,107,505 RGD:5509061
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 JBrowse link 10 17,723,228 17,725,674 RGD:5509061
G Cluap1 clusterin associated protein 1 JBrowse link 16 3,907,194 3,942,299 RGD:5509061
G Coq7 demethyl-Q 7 JBrowse link 7 118,509,659 118,533,356 RGD:5509061
G Cpox coproporphyrinogen oxidase JBrowse link 16 58,670,208 58,680,391 RGD:5509061
G Crebbp CREB binding protein JBrowse link 16 4,081,334 4,213,957 RGD:5509061
G Csk c-src tyrosine kinase JBrowse link 9 57,626,646 57,653,631 RGD:5509061
G Cyfip1 cytoplasmic FMR1 interacting protein 1 JBrowse link 7 55,842,022 55,932,633 RGD:5509061
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 JBrowse link 19 37,685,112 37,693,320 RGD:5509061
G Deaf1 DEAF1, transcription factor JBrowse link 7 141,297,176 141,338,869 RGD:5509061
G Disp1 dispatched RND transporter family member 1 JBrowse link 1 183,086,264 183,221,537 RGD:5509061
G Dlc1 deleted in liver cancer 1 JBrowse link 8 36,567,739 36,953,184 RGD:5509061
G Dlx5 distal-less homeobox 5 JBrowse link 6 6,877,801 6,882,068 RGD:5509061
G Dlx6 distal-less homeobox 6 JBrowse link 6 6,863,334 6,867,970 RGD:5509061
G Dnmt1 DNA methyltransferase (cytosine-5) 1 JBrowse link 9 20,907,206 20,959,888 RGD:5509061
G Dnmt3b DNA methyltransferase 3B JBrowse link 2 153,649,411 153,687,730 RGD:5509061
G Dnmt3l DNA (cytosine-5-)-methyltransferase 3-like JBrowse link 10 78,042,287 78,063,622 RGD:5509061
G Dvl1 dishevelled segment polarity protein 1 JBrowse link 4 155,847,402 155,859,303 RGD:5509061
G Dvl2 dishevelled segment polarity protein 2 JBrowse link 11 70,000,592 70,010,109 RGD:5509061
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 17 84,626,475 84,655,568 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 JBrowse link 9 78,478,453 78,481,724 RGD:5509061
G Ehmt1 euchromatic histone methyltransferase 1 JBrowse link 2 24,790,769 24,919,643 RGD:5509061
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 JBrowse link 17 34,898,463 34,914,073 RGD:5509061
G Emg1 EMG1 N1-specific pseudouridine methyltransferase JBrowse link 6 124,704,370 124,712,186 RGD:5509061
G Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 JBrowse link 15 54,838,901 54,952,789 RGD:5509061
G Ep300 E1A binding protein p300 JBrowse link 15 81,586,209 81,652,077 RGD:5509061
G Epn1 epsin 1 JBrowse link 7 5,080,137 5,098,179 RGD:5509061
G Epn2 epsin 2 JBrowse link 11 61,515,883 61,579,717 RGD:5509061
G Erf Ets2 repressor factor JBrowse link 7 25,242,560 25,251,104 RGD:5509061
G Fbxl5 F-box and leucine-rich repeat protein 5 JBrowse link 5 43,744,618 43,782,149 RGD:5509061
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:5509061
G Fen1 flap structure specific endonuclease 1 JBrowse link 19 10,199,132 10,204,393 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Fign fidgetin JBrowse link 2 63,971,508 64,098,038 RGD:5509061
G Fkbp1a FK506 binding protein 1a JBrowse link 2 151,542,483 151,561,691 RGD:5509061
G Foxb1 forkhead box B1 JBrowse link 9 69,757,710 69,760,940 RGD:5509061
G Frem2 Fras1 related extracellular matrix protein 2 JBrowse link 3 53,513,938 53,658,593 RGD:5509061
G Fzd1 frizzled class receptor 1 JBrowse link 5 4,753,839 4,758,216 RGD:5509061
G Fzd2 frizzled class receptor 2 JBrowse link 11 102,604,431 102,608,058 RGD:5509061
G Fzd3 frizzled class receptor 3 JBrowse link 14 65,192,441 65,262,463 RGD:5509061
G Fzd6 frizzled class receptor 6 JBrowse link 15 39,006,149 39,038,192 RGD:5509061
G Fzd7 frizzled class receptor 7 JBrowse link 1 59,482,147 59,486,955 RGD:5509061
G Gdf7 growth differentiation factor 7 JBrowse link 12 8,297,918 8,301,954 RGD:5509061
G Gldc glycine decarboxylase JBrowse link 19 30,098,441 30,175,441 RGD:5509061
G Glrx3 glutaredoxin 3 JBrowse link 7 137,437,573 137,469,631 RGD:5509061
G Grem1 gremlin 1, DAN family BMP antagonist JBrowse link 2 113,748,674 113,759,317 RGD:5509061
G Grhl2 grainyhead like transcription factor 2 JBrowse link 15 37,232,821 37,363,569 RGD:5509061
G Grhl3 grainyhead like transcription factor 3 JBrowse link 4 135,541,887 135,573,632 RGD:5509061
G Grip1 glutamate receptor interacting protein 1 JBrowse link 10 119,453,238 120,087,267 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hgs HGF-regulated tyrosine kinase substrate JBrowse link 11 120,467,605 120,483,984 RGD:5509061
G Hif1a hypoxia inducible factor 1, alpha subunit JBrowse link 12 73,901,324 73,947,554 RGD:5509061
G Hira histone cell cycle regulator JBrowse link 16 18,876,750 18,970,309 RGD:5509061
G Ift122 intraflagellar transport 122 JBrowse link 6 115,853,379 115,926,699 RGD:5509061
G Ift57 intraflagellar transport 57 JBrowse link 16 49,699,294 49,765,126 RGD:5509061
G Ikbkb inhibitor of kappaB kinase beta JBrowse link 8 22,659,205 22,706,589 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G Kat2a K(lysine) acetyltransferase 2A JBrowse link 11 100,704,746 100,712,485 RGD:5509061
G Kdm2b lysine (K)-specific demethylase 2B JBrowse link 5 122,870,664 122,989,270 RGD:5509061
G Kdm6a lysine (K)-specific demethylase 6A JBrowse link X 18,160,862 18,279,936 RGD:5509061
G Kdm8 lysine (K)-specific demethylase 8 JBrowse link 7 125,444,620 125,463,651 RGD:5509061
G Kif3b kinesin family member 3B JBrowse link 2 153,291,395 153,333,390 RGD:5509061
G Larp7 La ribonucleoprotein domain family, member 7 JBrowse link 3 127,536,714 127,553,349 RGD:5509061
G Lbx1 ladybird homeobox 1 JBrowse link 19 45,232,684 45,236,841 RGD:5509061
G Lbx2 ladybird homeobox 2 JBrowse link 6 83,086,365 83,088,243 RGD:5509061
G Lias lipoic acid synthetase JBrowse link 5 65,391,497 65,410,423 RGD:5509061
G Lin28a lin-28 homolog A (C. elegans) JBrowse link 4 134,003,330 134,019,196 RGD:5509061
G Lin28b lin-28 homolog B (C. elegans) JBrowse link 10 45,376,617 45,486,314 RGD:5509061
G Lmo4 LIM domain only 4 JBrowse link 3 144,188,530 144,205,255 RGD:5509061
G Map3k7 mitogen-activated protein kinase kinase kinase 7 JBrowse link 4 31,963,492 32,023,470 RGD:5509061
G Marcks myristoylated alanine rich protein kinase C substrate JBrowse link 10 37,133,243 37,138,926 RGD:5509061
G Mbd4 methyl-CpG binding domain protein 4 JBrowse link 6 115,840,697 115,853,400 RGD:5509061
G Med12 mediator complex subunit 12 JBrowse link X 101,274,091 101,298,934 RGD:5509061
G Med24 mediator complex subunit 24 JBrowse link 11 98,704,591 98,729,453 RGD:5509061
G Meox2 mesenchyme homeobox 2 JBrowse link 12 37,108,540 37,179,534 RGD:5509061
G Mthfd1 methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase JBrowse link 12 76,254,406 76,319,820 RGD:5509061
G Nckap1 NCK-associated protein 1 JBrowse link 2 80,500,512 80,581,182 RGD:5509061
G Nog noggin JBrowse link 11 89,300,638 89,302,559 RGD:5509061
G Notch1 notch 1 JBrowse link 2 26,457,902 26,503,822 RGD:5509061
G Notch4 notch 4 JBrowse link 17 34,564,286 34,588,543 RGD:5509061
G Numb NUMB endocytic adaptor protein JBrowse link 12 83,794,034 83,921,942 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pak2 p21 (RAC1) activated kinase 2 JBrowse link 16 32,016,290 32,079,342 RGD:5509061
G Palld palladin, cytoskeletal associated protein JBrowse link 8 61,511,431 61,902,707 RGD:5509061
G Pax1 paired box 1 JBrowse link 2 147,361,930 147,375,049 RGD:5509061
G Pax3 paired box 3 JBrowse link 1 78,101,267 78,197,136 RGD:5509061
G Pdgfra platelet derived growth factor receptor, alpha polypeptide JBrowse link 5 75,151,322 75,198,206 RGD:5509061
G Pdgfrb platelet derived growth factor receptor, beta polypeptide JBrowse link 18 61,045,127 61,085,067 RGD:5509061
G Phactr4 phosphatase and actin regulator 4 JBrowse link 4 132,355,922 132,422,446 RGD:5509061
G Pip4k2b phosphatidylinositol-5-phosphate 4-kinase, type II, beta JBrowse link 11 97,715,157 97,744,704 RGD:5509061
G Pkn2 protein kinase N2 JBrowse link 3 142,790,902 142,882,004 RGD:5509061
G Plpp3 phospholipid phosphatase 3 JBrowse link 4 105,157,347 105,232,767 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Porcn porcupine O-acyltransferase JBrowse link X 8,193,846 8,206,548 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Ptpn11 protein tyrosine phosphatase, non-receptor type 11 JBrowse link 5 121,130,533 121,191,397 RGD:5509061
G Qk quaking JBrowse link 17 10,206,471 10,319,361 RGD:5509061
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:5509061
G Rad9b RAD9 checkpoint clamp component B JBrowse link 5 122,323,223 122,354,270 RGD:5509061
G Rala v-ral simian leukemia viral oncogene A (ras related) JBrowse link 13 17,880,575 17,944,217 RGD:5509061
G Ralb v-ral simian leukemia viral oncogene B JBrowse link 1 119,470,305 119,504,782 RGD:5509061
G Rara retinoic acid receptor, alpha JBrowse link 11 98,927,800 98,974,942 RGD:5509061
G Rarg retinoic acid receptor, gamma JBrowse link 15 102,234,938 102,257,522 RGD:5509061
G Rbm12 RNA binding motif protein 12 JBrowse link 2 156,094,882 156,111,965 RGD:5509061
G Rere arginine glutamic acid dipeptide (RE) repeats JBrowse link 4 150,281,511 150,621,966 RGD:5509061
G Rraga Ras-related GTP binding A JBrowse link 4 86,575,673 86,577,285 RGD:5509061
G Sall1 spalt like transcription factor 1 JBrowse link 8 89,027,242 89,044,162 RGD:5509061
G Sall2 spalt like transcription factor 2 JBrowse link 14 52,311,177 52,328,670 RGD:5509061
G Sall4 spalt like transcription factor 4 JBrowse link 2 168,748,332 168,767,201 RGD:5509061
G Scrib scribbled planar cell polarity JBrowse link 15 76,047,162 76,069,784 RGD:5509061
G Sec23a SEC23 homolog A, COPII coat complex component JBrowse link 12 58,958,384 59,012,017 RGD:5509061
G Set SET nuclear oncogene JBrowse link 2 30,061,996 30,072,577 RGD:5509061
G Setd2 SET domain containing 2 JBrowse link 9 110,532,500 110,618,633 RGD:5509061
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 8 23,411,383 23,449,632 RGD:5509061
G Sfrp2 secreted frizzled-related protein 2 JBrowse link 3 83,765,750 83,774,314 RGD:5509061
G Sfrp5 secreted frizzled-related sequence protein 5 JBrowse link 19 42,197,971 42,202,252 RGD:5509061
G Shb src homology 2 domain-containing transforming protein B JBrowse link 4 45,423,276 45,530,828 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Shroom3 shroom family member 3 JBrowse link 5 92,683,435 92,965,759 RGD:5509061
G Ski ski sarcoma viral oncogene homolog (avian) JBrowse link 4 155,154,075 155,222,535 RGD:5509061
G Slc25a19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 JBrowse link 11 115,614,165 115,628,296 RGD:5509061
G Slc25a32 solute carrier family 25, member 32 JBrowse link 15 39,091,230 39,112,720 RGD:5509061
G Smarcc1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 JBrowse link 9 110,132,024 110,240,178 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Snai1 snail family zinc finger 1 JBrowse link 2 167,538,195 167,542,814 RGD:5509061
G Snai2 snail family zinc finger 2 JBrowse link 16 14,705,852 14,709,395 RGD:5509061
G Snx13 sorting nexin 13 JBrowse link 12 35,046,147 35,147,480 RGD:5509061
G Sox1 SRY (sex determining region Y)-box 1 JBrowse link 8 12,395,519 12,399,555 RGD:5509061
G Sox10 SRY (sex determining region Y)-box 10 JBrowse link 15 79,154,913 79,164,490 RGD:5509061
G Sox11 SRY (sex determining region Y)-box 11 JBrowse link 12 27,334,268 27,342,718 RGD:5509061
G Sox4 SRY (sex determining region Y)-box 4 JBrowse link 13 28,948,919 28,953,699 RGD:5509061
G Sp2 Sp2 transcription factor JBrowse link 11 96,953,332 96,982,959 RGD:5509061
G Srd5a3 steroid 5 alpha-reductase 3 JBrowse link 5 76,140,273 76,155,503 RGD:5509061
G Ss18 SS18, nBAF chromatin remodeling complex subunit JBrowse link 18 14,625,629 14,684,419 RGD:5509061
G Stk3 serine/threonine kinase 3 JBrowse link 15 34,875,499 35,155,882 RGD:5509061
G Stk4 serine/threonine kinase 4 JBrowse link 2 164,074,113 164,155,524 RGD:5509061
G Sufu SUFU negative regulator of hedgehog signaling JBrowse link 19 46,396,896 46,488,804 RGD:5509061
G Supt20 SPT20 SAGA complex component JBrowse link 3 54,692,760 54,728,763 RGD:5509061
G T brachyury, T-box transcription factor T JBrowse link 17 8,434,423 8,442,496 RGD:5509061
G Tcf3 transcription factor 3 JBrowse link 10 80,409,165 80,433,976 RGD:5509061
G Tcof1 treacle ribosome biogenesis factor 1 JBrowse link 18 60,813,738 60,848,983 RGD:5509061
G Tctn2 tectonic family member 2 JBrowse link 5 124,598,749 124,627,738 RGD:5509061
G Tead1 TEA domain family member 1 JBrowse link 7 112,679,356 112,906,784 RGD:5509061
G Tead2 TEA domain family member 2 JBrowse link 7 45,215,753 45,233,636 RGD:5509061
G Tenm4 teneurin transmembrane protein 4 JBrowse link 7 96,171,244 96,911,093 RGD:5509061
G Terc telomerase RNA component JBrowse link 3 96,414,437 96,414,833 RGD:5509061
G Tfap2a transcription factor AP-2, alpha JBrowse link 13 40,713,802 40,738,238 RGD:5509061
G Tfb1m transcription factor B1, mitochondrial JBrowse link 17 3,519,250 3,557,796 RGD:5509061
G Tgfb1 transforming growth factor, beta 1 JBrowse link 7 25,687,002 25,705,077 RGD:5509061
G Tmem163 transmembrane protein 163 JBrowse link 1 127,490,342 127,678,021 RGD:5509061
G Tnfrsf1a tumor necrosis factor receptor superfamily, member 1a JBrowse link 6 125,349,723 125,362,483 RGD:5509061
G Trim28 tripartite motif-containing 28 JBrowse link 7 13,024,152 13,031,032 RGD:5509061
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:5509061
G Tsc1 TSC complex subunit 1 JBrowse link 2 28,640,993 28,691,172 RGD:5509061
G Tsc2 TSC complex subunit 2 JBrowse link 17 24,595,816 24,632,676 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
G Twist1 twist basic helix-loop-helix transcription factor 1 JBrowse link 12 33,957,671 33,959,831 RGD:5509061
G Usp7 ubiquitin specific peptidase 7 JBrowse link 16 8,688,722 8,757,067 RGD:5509061
G Usp9x ubiquitin specific peptidase 9, X chromosome JBrowse link X 13,070,982 13,173,328 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
G Xist inactive X specific transcripts JBrowse link X 103,460,373 103,483,233 RGD:5509061
G Zeb1 zinc finger E-box binding homeobox 1 JBrowse link 18 5,591,327 5,775,468 RGD:5509061
G Zeb2 zinc finger E-box binding homeobox 2 JBrowse link 2 44,983,512 45,117,442 RGD:5509061
G Zfp148 zinc finger protein 148 JBrowse link 16 33,380,775 33,503,903 RGD:5509061
G Zfp36l1 zinc finger protein 36, C3H type-like 1 JBrowse link 12 80,107,760 80,113,013 RGD:5509061
G Zfp568 zinc finger protein 568 JBrowse link 7 29,983,955 30,028,282 RGD:5509061
G Zic3 zinc finger protein of the cerebellum 3 JBrowse link X 58,030,628 58,036,630 RGD:5509061
G Zic5 zinc finger protein of the cerebellum 5 JBrowse link 14 122,459,160 122,465,658 RGD:5509061
spina bifida term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ambra1 autophagy/beclin 1 regulator 1 JBrowse link 2 91,730,138 91,918,849 RGD:5509061
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 10 90,989,311 91,082,743 RGD:5509061
G Arhgap35 Rho GTPase activating protein 35 JBrowse link 7 16,494,473 16,614,993 RGD:5509061
G Arl13b ADP-ribosylation factor-like 13B JBrowse link 16 62,793,308 62,847,055 RGD:5509061
G Atmin ATM interactor JBrowse link 8 116,943,383 116,960,445 RGD:5509061
G Brca1 breast cancer 1, early onset JBrowse link 11 101,488,761 101,551,955 RGD:5509061
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 JBrowse link 15 85,898,758 86,034,223 RGD:5509061
G Chrna7 cholinergic receptor, nicotinic, alpha polypeptide 7 JBrowse link 7 63,098,692 63,212,526 RGD:5509061
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
G Dact1 dishevelled-binding antagonist of beta-catenin 1 JBrowse link 12 71,309,884 71,320,107 RGD:5509061
G Dicer1 dicer 1, ribonuclease type III JBrowse link 12 104,687,740 104,751,968 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Eef1a1 eukaryotic translation elongation factor 1 alpha 1 JBrowse link 9 78,478,453 78,481,724 RGD:5509061
G F2r coagulation factor II (thrombin) receptor JBrowse link 13 95,601,780 95,618,466 RGD:5509061
G F2rl1 coagulation factor II (thrombin) receptor-like 1 JBrowse link 13 95,511,718 95,525,240 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Fkbp8 FK506 binding protein 8 JBrowse link 8 70,527,710 70,535,328 RGD:5509061
G Foxc2 forkhead box C2 JBrowse link 8 121,116,171 121,118,895 RGD:5509061
G Foxp4 forkhead box P4 JBrowse link 17 47,867,133 47,924,632 RGD:5509061
G Gnaz guanine nucleotide binding protein, alpha z subunit JBrowse link 10 74,967,177 75,016,907 RGD:5509061
G Gpr161 G protein-coupled receptor 161 JBrowse link 1 165,281,184 165,326,747 RGD:5509061
G Grhl2 grainyhead like transcription factor 2 JBrowse link 15 37,232,821 37,363,569 RGD:5509061
G Grhl3 grainyhead like transcription factor 3 JBrowse link 4 135,541,887 135,573,632 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hhip Hedgehog-interacting protein JBrowse link 8 79,965,850 80,058,060 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G Itpk1 inositol 1,3,4-triphosphate 5/6 kinase JBrowse link 12 102,568,583 102,704,869 RGD:5509061
G Kitl kit ligand JBrowse link 10 100,015,615 100,100,416 RGD:5509061
G Lmo4 LIM domain only 4 JBrowse link 3 144,188,530 144,205,255 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:5509061
G Lyar Ly1 antibody reactive clone JBrowse link 5 38,220,471 38,234,306 RGD:5509061
G Map3k4 mitogen-activated protein kinase kinase kinase 4 JBrowse link 17 12,227,621 12,318,796 RGD:5509061
G Mapk11 mitogen-activated protein kinase 11 JBrowse link 15 89,142,482 89,149,606 RGD:5509061
G Mapk14 mitogen-activated protein kinase 14 JBrowse link 17 28,691,342 28,748,405 RGD:5509061
G Mdfi MyoD family inhibitor JBrowse link 17 47,815,328 47,834,691 RGD:5509061
G Mesp2 mesoderm posterior 2 JBrowse link 7 79,810,727 79,813,431 RGD:5509061
G Msx1 msh homeobox 1 JBrowse link 5 37,820,491 37,824,585 RGD:5509061
G Msx2 msh homeobox 2 JBrowse link 13 53,466,881 53,472,780 RGD:5509061
G Nuak2 NUAK family, SNF1-like kinase, 2 JBrowse link 1 132,316,125 132,333,488 RGD:5509061
G Pax1 paired box 1 JBrowse link 2 147,361,930 147,375,049 RGD:5509061
G Pax3 paired box 3 JBrowse link 1 78,101,267 78,197,136 RGD:5509061
G Pdgfa platelet derived growth factor, alpha JBrowse link 5 138,976,014 139,000,792 RGD:5509061
G Pdgfc platelet-derived growth factor, C polypeptide JBrowse link 3 81,036,416 81,214,040 RGD:5509061
G Pdgfra platelet derived growth factor receptor, alpha polypeptide JBrowse link 5 75,151,322 75,198,206 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Prkaca protein kinase, cAMP dependent, catalytic, alpha JBrowse link 8 83,972,978 83,996,444 RGD:5509061
G Prkacb protein kinase, cAMP dependent, catalytic, beta JBrowse link 3 146,729,579 146,812,946 RGD:5509061
G Prrx1 paired related homeobox 1 JBrowse link 1 163,245,119 163,315,145 RGD:5509061
G Prrx2 paired related homeobox 2 JBrowse link 2 30,845,064 30,881,251 RGD:5509061
G Prss8 protease, serine 8 (prostasin) JBrowse link 7 127,925,717 127,930,149 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Ptk7 PTK7 protein tyrosine kinase 7 JBrowse link 17 46,564,451 46,630,049 RGD:5509061
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:5509061
G Rac1 Rac family small GTPase 1 JBrowse link 5 143,505,481 143,528,031 RGD:5509061
G Rapgef2 Rap guanine nucleotide exchange factor (GEF) 2 JBrowse link 3 79,062,511 79,286,545 RGD:5509061
G Rpl38 ribosomal protein L38 JBrowse link 11 114,667,818 114,672,333 RGD:5509061
G Scrib scribbled planar cell polarity JBrowse link 15 76,047,162 76,069,784 RGD:5509061
G Sestd1 SEC14 and spectrin domains 1 JBrowse link 2 77,180,340 77,280,627 RGD:5509061
G Sfrp1 secreted frizzled-related protein 1 JBrowse link 8 23,411,383 23,449,632 RGD:5509061
G Sfrp2 secreted frizzled-related protein 2 JBrowse link 3 83,765,750 83,774,314 RGD:5509061
G Sfrp5 secreted frizzled-related sequence protein 5 JBrowse link 19 42,197,971 42,202,252 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Snx3 sorting nexin 3 JBrowse link 10 42,502,054 42,535,369 RGD:5509061
G Sp8 trans-acting transcription factor 8 JBrowse link 12 118,846,288 118,852,578 RGD:5509061
G Spint1 serine protease inhibitor, Kunitz type 1 JBrowse link 2 119,237,360 119,249,535 RGD:5509061
G Spint2 serine protease inhibitor, Kunitz type 2 JBrowse link 7 29,256,330 29,282,059 RGD:5509061
G St14 suppression of tumorigenicity 14 (colon carcinoma) JBrowse link 9 31,088,590 31,131,811 RGD:5509061
G Supt20 SPT20 SAGA complex component JBrowse link 3 54,692,760 54,728,763 RGD:5509061
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 11 79,993,106 80,034,123 RGD:5509061
G T brachyury, T-box transcription factor T JBrowse link 17 8,434,423 8,442,496 RGD:5509061
G Tcf3 transcription factor 3 JBrowse link 10 80,409,165 80,433,976 RGD:5509061
G Tmem132a transmembrane protein 132A JBrowse link 19 10,857,829 10,870,205 RGD:5509061
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:5509061
G Trp53bp2 transformation related protein 53 binding protein 2 JBrowse link 1 182,409,167 182,462,436 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
G Vangl2 VANGL planar cell polarity 2 JBrowse link 1 172,000,960 172,027,318 RGD:5509061
G Wnt3a wingless-type MMTV integration site family, member 3A JBrowse link 11 59,248,036 59,290,751 RGD:5509061
G Zic2 zinc finger protein of the cerebellum 2 JBrowse link 14 122,475,384 122,480,328 RGD:5509061
spina bifida cystica term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Grhl3 grainyhead like transcription factor 3 JBrowse link 4 135,541,887 135,573,632 RGD:5509061
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:5509061
G Pax3 paired box 3 JBrowse link 1 78,101,267 78,197,136 RGD:5509061
G Traf4 TNF receptor associated factor 4 JBrowse link 11 78,158,423 78,165,579 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
spina bifida occulta term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 10 90,989,311 91,082,743 RGD:5509061
G Foxc2 forkhead box C2 JBrowse link 8 121,116,171 121,118,895 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Kif3a kinesin family member 3A JBrowse link 11 53,565,701 53,604,248 RGD:5509061
G Lasp1 LIM and SH3 protein 1 JBrowse link 11 97,799,005 97,838,765 RGD:5509061
G Lrp6 low density lipoprotein receptor-related protein 6 JBrowse link 6 134,446,476 134,566,913 RGD:5509061
G Nog noggin JBrowse link 11 89,300,638 89,302,559 RGD:5509061
G Pax1 paired box 1 JBrowse link 2 147,361,930 147,375,049 RGD:5509061
G Pdgfa platelet derived growth factor, alpha JBrowse link 5 138,976,014 139,000,792 RGD:5509061
G Pdgfc platelet-derived growth factor, C polypeptide JBrowse link 3 81,036,416 81,214,040 RGD:5509061
G Pkd1 polycystin 1, transient receptor poteintial channel interacting JBrowse link 17 24,548,689 24,596,514 RGD:5509061
G Rab23 RAB23, member RAS oncogene family JBrowse link 1 33,719,896 33,742,564 RGD:5509061
G T brachyury, T-box transcription factor T JBrowse link 17 8,434,423 8,442,496 RGD:5509061
G Tgfb2 transforming growth factor, beta 2 JBrowse link 1 186,622,787 186,709,697 RGD:5509061
G Traf4 TNF receptor associated factor 4 JBrowse link 11 78,158,423 78,165,579 RGD:5509061
G Trpm6 transient receptor potential cation channel, subfamily M, member 6 JBrowse link 19 18,730,177 18,892,521 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 13565
    nervous system phenotype 3734
      abnormal nervous system morphology 2965
        abnormal nervous system development 1297
          abnormal neural tube morphology 620
            abnormal neural tube closure 400
              delayed neural tube closure + 37
              incomplete caudal neuropore closure 10
              incomplete rostral neuropore closure 94
              open neural tube + 254
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.