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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.

Term:pulmonary edema
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Accession:MP:0003828 term browser browse the term
Definition:an accumulation of an excessive amount of serous fluid in the parenchyma and the alveoli via effusion of intravascular fluid from the pulmonary vascular bed
Synonyms:exact_synonym: pulmonary oedema;   wet lung


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pulmonary edema term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G A1cf APOBEC1 complementation factor IAGP MGI PMID:21245375 NCBI chr19:31,868,756...31,952,365
Ensembl chr19:31,868,764...31,948,995
JBrowse link
G Ace2 angiotensin I converting enzyme (peptidyl-dipeptidase A) 2 IAGP MGI PMID:16001071, PMID:24800825 NCBI chr  X:164,139,342...164,188,418
Ensembl chr  X:164,139,332...164,188,420
JBrowse link
G Adipoq adiponectin, C1Q and collagen domain containing IAGP MGI PMID:15907819 NCBI chr16:23,146,536...23,157,968
Ensembl chr16:23,146,536...23,158,028
JBrowse link
G Ahr aryl-hydrocarbon receptor IAGP MGI PMID:15123765 NCBI chr12:35,497,979...35,534,989
Ensembl chr12:35,497,974...35,535,038
JBrowse link
G Aplnr apelin receptor IAGP MGI PMID:25062690 NCBI chr 2:85,136,360...85,139,923
Ensembl chr 2:85,136,225...85,139,923
JBrowse link
G Atp2a2 ATPase, Ca++ transporting, cardiac muscle, slow twitch 2 IAGP MGI PMID:14630633 NCBI chr 5:122,453,513...122,502,225
Ensembl chr 5:122,453,513...122,502,225
JBrowse link
G Bag3 BCL2-associated athanogene 3 IAGP MGI PMID:16936253 NCBI chr 7:128,523,583...128,546,981
Ensembl chr 7:128,523,616...128,546,981
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin IAGP MGI PMID:8441253 NCBI chr 2:122,738,505...122,749,487
Ensembl chr 2:122,738,503...122,749,475
JBrowse link
G Cav1 caveolin 1, caveolae protein IAGP MGI PMID:18849439 NCBI chr 6:17,306,335...17,341,328
Ensembl chr 6:17,306,335...17,341,452
JBrowse link
G Cd14 CD14 antigen IAGP MGI PMID:15731076 NCBI chr18:36,725,064...36,726,815
Ensembl chr18:36,725,067...36,726,798
JBrowse link
G Dpp4 dipeptidylpeptidase 4 IAGP MGI PMID:27795435, PMID:28348219 NCBI chr 2:62,330,073...62,412,315
Ensembl chr 2:62,330,073...62,412,231
JBrowse link
G Dusp1 dual specificity phosphatase 1 IAGP MGI PMID:16380513 NCBI chr17:26,505,591...26,508,472
Ensembl chr17:26,505,590...26,562,128
JBrowse link
G E2f3 E2F transcription factor 3 IAGP MGI PMID:11909960 NCBI chr13:29,906,575...29,986,064
Ensembl chr13:29,906,575...29,986,063
JBrowse link
G Epha3 Eph receptor A3 IAGP MGI PMID:14585969 NCBI chr16:63,543,532...63,864,175
Ensembl chr16:63,543,534...63,864,175
JBrowse link
G Erg ETS transcription factor IAGP MGI PMID:25062690 NCBI chr16:95,359,169...95,586,600
Ensembl chr16:95,359,169...95,586,593
JBrowse link
G Gata4 GATA binding protein 4 IAGP MGI PMID:16514068 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Gnai2 guanine nucleotide binding protein (G protein), alpha inhibiting 2 IAGP MGI PMID:14612574 NCBI chr 9:107,614,125...107,635,391
Ensembl chr 9:107,614,125...107,635,367
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 IAGP MGI PMID:15297376 NCBI chr10:30,832,359...30,842,783
Ensembl chr10:30,832,359...30,842,801
JBrowse link
G Ighmbp2 immunoglobulin mu binding protein 2 IAGP MGI PMID:15069027 NCBI chr19:3,259,076...3,283,010
Ensembl chr19:3,259,076...3,283,017
JBrowse link
G Il17ra interleukin 17 receptor A IAGP MGI PMID:11514607 NCBI chr 6:120,463,181...120,483,731
Ensembl chr 6:120,463,247...120,487,559
JBrowse link
G Inpp5d inositol polyphosphate-5-phosphatase D IAGP MGI PMID:15944314 NCBI chr 1:87,620,312...87,720,510
Ensembl chr 1:87,620,312...87,720,507
JBrowse link
G Jup junction plakoglobin IAGP MGI PMID:21245375 NCBI chr11:100,368,856...100,397,839
Ensembl chr11:100,368,958...100,397,763
JBrowse link
G Klf5 Kruppel-like factor 5 IAGP MGI PMID:20038803 NCBI chr14:99,298,691...99,313,412
Ensembl chr14:99,298,691...99,315,036
JBrowse link
G Lims1 LIM and senescent cell antigen-like domains 1 IAGP MGI PMID:19652092 NCBI chr10:58,323,342...58,424,691
Ensembl chr10:58,323,466...58,424,691
JBrowse link
G Lims2 LIM and senescent cell antigen like domains 2 IAGP MGI PMID:19652092 NCBI chr18:31,922,293...31,958,620
Ensembl chr18:31,922,290...31,958,619
JBrowse link
G Lmna lamin A IAGP MGI PMID:23575224 NCBI chr 3:88,481,148...88,509,932
Ensembl chr 3:88,480,147...88,509,956
JBrowse link
G Lyz2 lysozyme 2 IAGP MGI PMID:19286998 NCBI chr10:117,277,541...117,282,272
Ensembl chr10:117,277,331...117,282,321
JBrowse link
G Med1 mediator complex subunit 1 IAGP MGI PMID:27548259 NCBI chr11:98,152,154...98,193,313
Ensembl chr11:98,152,154...98,193,293
JBrowse link
G Myl2 myosin, light polypeptide 2, regulatory, cardiac, slow IAGP MGI PMID:11593045, PMID:22082674 NCBI chr 5:122,092,724...122,113,473
Ensembl chr 5:122,100,951...122,113,472
JBrowse link
G Ntf3 neurotrophin 3 IAGP MGI PMID:8841198 NCBI chr 6:126,101,412...126,166,772
Ensembl chr 6:126,101,412...126,166,910
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 IAGP MGI PMID:22082674 NCBI chr 7:97,788,541...97,912,381
Ensembl chr 7:97,788,541...97,912,381
JBrowse link
G Pecam1 platelet/endothelial cell adhesion molecule 1 IAGP MGI PMID:15632011 NCBI chr11:106,654,213...106,715,281
Ensembl chr11:106,654,217...106,750,628
JBrowse link
G Pten phosphatase and tensin homolog IAGP MGI PMID:19286998 NCBI chr19:32,757,577...32,826,160
Ensembl chr19:32,757,497...32,826,160
JBrowse link
G Ptger4 prostaglandin E receptor 4 (subtype EP4) IAGP MGI PMID:9363893 NCBI chr15:5,233,399...5,244,187
Ensembl chr15:5,206,661...5,244,187
JBrowse link
G Sirt1 sirtuin 1 IAGP MGI PMID:12482959 NCBI chr10:63,319,005...63,339,035
Ensembl chr10:63,319,005...63,381,704
JBrowse link
G Spag17 sperm associated antigen 17 IAGP MGI PMID:23418344 NCBI chr 3:99,885,417...100,143,322
Ensembl chr 3:99,885,406...100,143,322
JBrowse link
G Sstr4 somatostatin receptor 4 IAGP MGI PMID:19622729 NCBI chr 2:148,395,377...148,396,764
Ensembl chr 2:148,395,344...148,396,767
JBrowse link
G Stat1 signal transducer and activator of transcription 1 IAGP MGI PMID:20386712 NCBI chr 1:52,119,438...52,161,865
Ensembl chr 1:52,119,440...52,161,865
JBrowse link
G Tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1 IAGP MGI PMID:7596437 NCBI chr 4:118,471,191...118,489,849
Ensembl chr 4:118,471,191...118,490,061
JBrowse link
G Timp3 tissue inhibitor of metalloproteinase 3 IAGP MGI PMID:16037568 NCBI chr10:86,300,412...86,349,505
Ensembl chr10:86,300,372...86,349,506
JBrowse link
G Tlr4 toll-like receptor 4 IAGP MGI PMID:15731076 NCBI chr 4:66,827,551...66,846,581
Ensembl chr 4:66,827,584...66,930,284
JBrowse link
G Trim55 tripartite motif-containing 55 IAGP MGI PMID:18157088, PMID:23512667 NCBI chr 3:19,644,344...19,692,584
Ensembl chr 3:19,644,474...19,692,421
JBrowse link
G Trim63 tripartite motif-containing 63 IAGP MGI PMID:18157088, PMID:23512667 NCBI chr 4:134,315,120...134,329,629
Ensembl chr 4:134,315,120...134,329,629
JBrowse link
G Vegfa vascular endothelial growth factor A IAGP MGI PMID:20167862 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
G Zfand5 zinc finger, AN1-type domain 5 IAGP MGI PMID:17143286 NCBI chr19:21,271,786...21,286,840
Ensembl chr19:21,272,278...21,286,840
JBrowse link
G Zmynd10 zinc finger, MYND domain containing 10 IAGP MGI PMID:29601588 NCBI chr 9:107,546,872...107,551,321
Ensembl chr 9:107,547,298...107,551,319
JBrowse link
pulmonary alveolar edema term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahr aryl-hydrocarbon receptor IAGP MGI PMID:15123765 NCBI chr12:35,497,979...35,534,989
Ensembl chr12:35,497,974...35,535,038
JBrowse link
G Asah1 N-acylsphingosine amidohydrolase 1 IAGP MGI PMID:23681708 NCBI chr 8:41,340,646...41,397,644
Ensembl chr 8:41,340,197...41,374,773
JBrowse link
G Chd2 chromodomain helicase DNA binding protein 2 IAGP MGI PMID:16810678 NCBI chr 7:73,426,652...73,541,746
Ensembl chr 7:73,426,638...73,541,830
JBrowse link
G Dpp4 dipeptidylpeptidase 4 IAGP MGI PMID:27892925 NCBI chr 2:62,330,073...62,412,315
Ensembl chr 2:62,330,073...62,412,231
JBrowse link
G Klf5 Kruppel-like factor 5 IAGP MGI PMID:20038803 NCBI chr14:99,298,691...99,313,412
Ensembl chr14:99,298,691...99,315,036
JBrowse link
G Nos3 nitric oxide synthase 3, endothelial cell IAGP MGI PMID:12176963 NCBI chr 5:24,364,816...24,384,474
Ensembl chr 5:24,364,810...24,384,474
JBrowse link
G Prdx6 peroxiredoxin 6 IAGP MGI PMID:12732627 NCBI chr 1:161,240,112...161,251,210
Ensembl chr 1:161,240,112...161,251,219
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 14694
    respiratory system phenotype 1609
      abnormal respiratory system morphology 1083
        abnormal lung morphology 729
          pulmonary edema 50
            pulmonary alveolar edema 7
Path 2
Term Annotations click to browse term
  mammalian phenotype 14694
    homeostasis/metabolism phenotype 6158
      abnormal homeostasis 5373
        abnormal fluid regulation 942
          edema 634
            pulmonary edema 50
              pulmonary alveolar edema 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.