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ONTOLOGY REPORT - ANNOTATIONS


Term:cochlear outer hair cell degeneration
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Accession:MP:0004404 term browser browse the term
Definition:degeneration or loss of the columnar outer hair sensory cells of the organ of Corti
Synonyms:exact_synonym: auditory outer hair cell degeneration


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cochlear outer hair cell degeneration term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adgrv1 adhesion G protein-coupled receptor V1 JBrowse link 13 81,095,068 81,633,391 RGD:5509061
G Alg10b asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase) JBrowse link 15 90,224,311 90,230,554 RGD:5509061
G Ap1g1 adaptor protein complex AP-1, gamma 1 subunit JBrowse link 8 109,778,583 109,864,210 RGD:5509061
G Apoe apolipoprotein E JBrowse link 7 19,696,244 19,701,310 RGD:5509061
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 JBrowse link 6 113,743,831 114,042,613 RGD:5509061
G Atp8b1 ATPase, class I, type 8B, member 1 JBrowse link 18 64,528,979 64,661,272 RGD:5509061
G Barhl1 BarH like homeobox 1 JBrowse link 2 28,907,680 28,917,984 RGD:5509061
G Bsnd barttin CLCNK type accessory beta subunit JBrowse link 4 106,483,456 106,492,243 RGD:5509061
G Cacna1d calcium channel, voltage-dependent, L type, alpha 1D subunit JBrowse link 14 30,039,941 30,491,156 RGD:5509061
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:5509061
G Cdh23 cadherin 23 (otocadherin) JBrowse link 10 60,302,748 60,696,513 RGD:5509061
G Cdkn2d cyclin dependent kinase inhibitor 2D JBrowse link 9 21,288,459 21,291,421 RGD:5509061
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 JBrowse link 15 85,898,758 86,034,223 RGD:5509061
G Cldn11 claudin 11 JBrowse link 3 31,149,920 31,164,326 RGD:5509061
G Cldn14 claudin 14 JBrowse link 16 93,919,031 94,008,837 RGD:5509061
G Cldn9 claudin 9 JBrowse link 17 23,682,584 23,684,026 RGD:5509061
G Clic5 chloride intracellular channel 5 JBrowse link 17 44,134,762 44,280,169 RGD:5509061
G Cmah cytidine monophospho-N-acetylneuraminic acid hydroxylase JBrowse link 13 24,327,404 24,477,289 RGD:5509061
G Dock2 dedicator of cyto-kinesis 2 JBrowse link 11 34,226,815 34,783,905 RGD:5509061
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 JBrowse link 14 32,513,291 32,580,990 RGD:5509061
G Espn espin JBrowse link 4 152,120,331 152,152,414 RGD:5509061
G Fzd4 frizzled class receptor 4 JBrowse link 7 89,404,366 89,410,110 RGD:5509061
G Gabra5 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5 JBrowse link 7 57,407,669 57,591,016 RGD:5509061
G Gabrb2 gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 JBrowse link 11 42,419,515 42,632,591 RGD:5509061
G Gabrb3 gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 JBrowse link 7 57,590,518 57,828,802 RGD:5509061
G Gata3 GATA binding protein 3 JBrowse link 2 9,857,078 9,887,953 RGD:5509061
G Gfi1 growth factor independent 1 transcription repressor JBrowse link 5 107,716,655 107,725,805 RGD:5509061
G Gjb2 gap junction protein, beta 2 JBrowse link 14 57,098,602 57,104,702 RGD:5509061
G Gjb6 gap junction protein, beta 6 JBrowse link 14 57,123,301 57,133,611 RGD:5509061
G Gpx1 glutathione peroxidase 1 JBrowse link 9 108,339,080 108,340,342 RGD:5509061
G Grid1 glutamate receptor, ionotropic, delta 1 JBrowse link 14 34,820,003 35,583,387 RGD:5509061
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 JBrowse link 1 172,341,210 172,374,085 RGD:5509061
G Kcnma1 potassium large conductance calcium-activated channel, subfamily M, alpha member 1 JBrowse link 14 23,292,288 24,005,110 RGD:5509061
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 JBrowse link 7 143,106,877 143,427,050 RGD:5509061
G Kcnq4 potassium voltage-gated channel, subfamily Q, member 4 JBrowse link 4 120,696,134 120,747,491 RGD:5509061
G Lhfpl5 lipoma HMGIC fusion partner-like 5 JBrowse link 17 28,575,369 28,583,593 RGD:5509061
G Map3k1 mitogen-activated protein kinase kinase kinase 1 JBrowse link 13 111,746,428 111,818,269 RGD:5509061
G Mir96 microRNA 96 JBrowse link 6 30,169,446 30,169,551 RGD:5509061
G Mpv17 MpV17 mitochondrial inner membrane protein JBrowse link 5 31,140,663 31,154,251 RGD:5509061
G Myo3a myosin IIIA JBrowse link 2 22,227,503 22,618,252 RGD:5509061
G Myo6 myosin VI JBrowse link 9 80,164,976 80,311,729 RGD:5509061
G Myo7a myosin VIIA JBrowse link 7 98,051,054 98,119,522 RGD:5509061
G Ndp Norrie disease (pseudoglioma) (human) JBrowse link X 16,885,521 16,911,774 RGD:5509061
G Ocm oncomodulin JBrowse link 5 144,019,807 144,050,640 RGD:5509061
G Pax8 paired box 8 JBrowse link 2 24,420,551 24,475,599 RGD:5509061
G Pcdh15 protocadherin 15 JBrowse link 10 73,096,277 74,649,831 RGD:5509061
G Polg polymerase (DNA directed), gamma JBrowse link 7 79,446,231 79,467,911 RGD:5509061
G Pou1f1 POU domain, class 1, transcription factor 1 JBrowse link 16 65,520,512 65,535,018 RGD:5509061
G Pou3f4 POU domain, class 3, transcription factor 4 JBrowse link X 110,814,379 110,819,108 RGD:5509061
G Pou4f3 POU domain, class 4, transcription factor 3 JBrowse link 18 42,394,597 42,396,093 RGD:5509061
G Ppip5k2 diphosphoinositol pentakisphosphate kinase 2 JBrowse link 1 97,706,043 97,770,411 RGD:5509061
G Psap prosaposin JBrowse link 10 60,277,628 60,302,600 RGD:5509061
G Rb1 RB transcriptional corepressor 1 JBrowse link 14 73,192,858 73,325,951 RGD:5509061
G S1pr2 sphingosine-1-phosphate receptor 2 JBrowse link 9 20,965,952 20,976,793 RGD:5509061
G S1pr3 sphingosine-1-phosphate receptor 3 JBrowse link 13 51,408,618 51,422,797 RGD:5509061
G Scarb2 scavenger receptor class B, member 2 JBrowse link 5 92,441,311 92,505,657 RGD:5509061
G Slc12a6 solute carrier family 12, member 6 JBrowse link 2 112,266,314 112,363,163 RGD:5509061
G Slc12a7 solute carrier family 12, member 7 JBrowse link 13 73,733,052 73,816,754 RGD:5509061
G Slc19a2 solute carrier family 19 (thiamine transporter), member 2 JBrowse link 1 164,249,046 164,265,385 RGD:5509061
G Slc26a4 solute carrier family 26, member 4 JBrowse link 12 31,519,814 31,560,055 RGD:5509061
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 JBrowse link 14 14,703,011 14,799,944 RGD:5509061
G Sod1 superoxide dismutase 1, soluble JBrowse link 16 90,220,762 90,226,333 RGD:5509061
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 5 139,200,564 139,249,839 RGD:5509061
G Syne4 spectrin repeat containing, nuclear envelope family member 4 JBrowse link 7 30,314,816 30,319,045 RGD:5509061
G Synj2 synaptojanin 2 JBrowse link 17 5,941,280 6,055,766 RGD:5509061
G Thrb thyroid hormone receptor beta JBrowse link 14 17,659,225 18,040,097 RGD:5509061
G Tmc1 transmembrane channel-like gene family 1 JBrowse link 19 20,783,456 21,037,126 RGD:5509061
G Tmc2 transmembrane channel-like gene family 2 JBrowse link 2 130,195,194 130,265,189 RGD:5509061
G Tmprss3 transmembrane protease, serine 3 JBrowse link 17 31,179,263 31,200,504 RGD:5509061
G Tmtc4 transmembrane and tetratricopeptide repeat containing 4 JBrowse link 14 122,918,971 122,983,285 RGD:5509061
G Tomt transmembrane O-methyltransferase JBrowse link 7 101,899,803 101,906,407 RGD:5509061
G Tprn taperin JBrowse link 2 25,262,598 25,269,886 RGD:5509061
G Tub tubby bipartite transcription factor JBrowse link 7 109,010,880 109,034,459 RGD:5509061
G Ush1c USH1 protein network component harmonin JBrowse link 7 46,195,350 46,238,490 RGD:5509061
G Ush1g USH1 protein network component sans JBrowse link 11 115,315,192 115,333,736 RGD:5509061
G Whrn whirlin JBrowse link 4 63,414,908 63,496,083 RGD:5509061

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 13565
    nervous system phenotype 3743
      abnormal nervous system morphology 2975
        neurodegeneration 534
          neuron degeneration 429
            cochlear hair cell degeneration 100
              cochlear outer hair cell degeneration 77
Path 2
Term Annotations click to browse term
  mammalian phenotype 13565
    hearing/vestibular/ear phenotype 736
      abnormal ear morphology 488
        abnormal inner ear morphology 300
          abnormal membranous labyrinth morphology 265
            abnormal cochlear labyrinth morphology 233
              abnormal scala media morphology 233
                abnormal organ of Corti morphology 207
                  abnormal cochlear hair cell morphology 198
                    cochlear hair cell degeneration 100
                      cochlear outer hair cell degeneration 77
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.