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ONTOLOGY REPORT - ANNOTATIONS


Term:abnormal hindbrain development
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Accession:MP:0006108 term browser browse the term
Definition:anomaly in the formation or pattering of the caudal region of the brain


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abnormal hindbrain development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actr5 ARP5 actin-related protein 5 JBrowse link 2 158,624,881 158,639,211 RGD:5509061
G Alg10b asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase) JBrowse link 15 90,224,311 90,230,554 RGD:5509061
G Apc APC, WNT signaling pathway regulator JBrowse link 18 34,220,297 34,322,190 RGD:5509061
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Bmp4 bone morphogenetic protein 4 JBrowse link 14 46,383,525 46,390,669 RGD:5509061
G Cacna2d2 calcium channel, voltage-dependent, alpha 2/delta subunit 2 JBrowse link 9 107,399,733 107,529,346 RGD:5509061
G Ccnf cyclin F JBrowse link 17 24,223,230 24,251,409 RGD:5509061
G Chchd1 coiled-coil-helix-coiled-coil-helix domain containing 1 JBrowse link 14 20,703,027 20,704,425 RGD:5509061
G Cox4i1 cytochrome c oxidase subunit 4I1 JBrowse link 8 120,668,225 120,674,209 RGD:5509061
G Creld1 cysteine-rich with EGF-like domains 1 JBrowse link 6 113,483,356 113,493,343 RGD:5509061
G Crybg1 crystallin beta-gamma domain containing 1 JBrowse link 10 43,950,307 44,148,828 RGD:5509061
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 JBrowse link 19 37,685,112 37,693,320 RGD:5509061
G Dlc1 deleted in liver cancer 1 JBrowse link 8 36,567,739 36,953,184 RGD:5509061
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 JBrowse link 17 84,626,475 84,655,568 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Egr1 early growth response 1 JBrowse link 18 34,861,207 34,864,956 RGD:5509061
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G Folr1 folate receptor 1 (adult) JBrowse link 7 101,858,331 101,870,788 RGD:5509061
G Foxo1 forkhead box O1 JBrowse link 3 52,268,337 52,350,109 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gsx2 GS homeobox 2 JBrowse link 5 75,075,601 75,077,893 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Hira histone cell cycle regulator JBrowse link 16 18,876,750 18,970,309 RGD:5509061
G Ift43 intraflagellar transport 43 JBrowse link 12 86,082,561 86,162,459 RGD:5509061
G Ift88 intraflagellar transport 88 JBrowse link 14 57,424,064 57,517,936 RGD:5509061
G Junb jun B proto-oncogene JBrowse link 8 84,976,909 84,978,748 RGD:5509061
G Krit1 KRIT1, ankyrin repeat containing JBrowse link 5 3,803,156 3,844,515 RGD:5509061
G Lhx1 LIM homeobox protein 1 JBrowse link 11 84,517,975 84,525,534 RGD:5509061
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) JBrowse link 2 160,363,677 160,367,065 RGD:5509061
G Mvk mevalonate kinase JBrowse link 5 114,444,264 114,460,591 RGD:5509061
G Nr6a1 nuclear receptor subfamily 6, group A, member 1 JBrowse link 2 38,723,369 38,926,461 RGD:5509061
G Numb NUMB endocytic adaptor protein JBrowse link 12 83,794,034 83,921,942 RGD:5509061
G Olig2 oligodendrocyte transcription factor 2 JBrowse link 16 91,225,550 91,228,677 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
G Pax5 paired box 5 JBrowse link 4 44,524,748 44,710,694 RGD:5509061
G Pigq phosphatidylinositol glycan anchor biosynthesis, class Q JBrowse link 17 25,926,420 25,942,881 RGD:5509061
G Psen1 presenilin 1 JBrowse link 12 83,688,152 83,735,095 RGD:5509061
G Psen2 presenilin 2 JBrowse link 1 180,227,004 180,263,467 RGD:5509061
G Rad9a RAD9 checkpoint clamp component A JBrowse link 19 4,195,196 4,201,672 RGD:5509061
G Rdh10 retinol dehydrogenase 10 (all-trans) JBrowse link 1 16,105,882 16,132,550 RGD:5509061
G Slc35b4 solute carrier family 35, member B4 JBrowse link 6 34,155,872 34,177,054 RGD:5509061
G Slc39a4 solute carrier family 39 (zinc transporter), member 4 JBrowse link 15 76,612,383 76,618,506 RGD:5509061
G Smad2 SMAD family member 2 JBrowse link 18 76,241,090 76,311,748 RGD:5509061
G Smad4 SMAD family member 4 JBrowse link 18 73,634,790 73,703,791 RGD:5509061
G Sufu SUFU negative regulator of hedgehog signaling JBrowse link 19 46,396,896 46,488,804 RGD:5509061
G Tgif1 TGFB-induced factor homeobox 1 JBrowse link 17 70,844,205 70,853,532 RGD:5509061
G Tmem100 transmembrane protein 100 JBrowse link 11 90,030,348 90,036,508 RGD:5509061
G Tulp3 tubby-like protein 3 JBrowse link 6 128,321,140 128,355,873 RGD:5509061
G Wls wntless WNT ligand secretion mediator JBrowse link 3 159,839,650 159,938,666 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
abnormal cerebellar foliation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase JBrowse link 2 31,688,244 31,807,093 RGD:5509061
G Abr active BCR-related gene JBrowse link 11 76,416,732 76,623,324 RGD:5509061
G Agtpbp1 ATP/GTP binding protein 1 JBrowse link 13 59,449,534 59,557,370 RGD:5509061
G Bcr BCR activator of RhoGEF and GTPase JBrowse link 10 75,060,560 75,184,923 RGD:5509061
G Ccnd2 cyclin D2 JBrowse link 6 127,125,162 127,152,188 RGD:5509061
G Cdk5 cyclin-dependent kinase 5 JBrowse link 5 24,407,597 24,423,587 RGD:5509061
G Crk v-crk avian sarcoma virus CT10 oncogene homolog JBrowse link 11 75,679,194 75,708,428 RGD:5509061
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like JBrowse link 16 17,451,985 17,487,440 RGD:5509061
G Dab1 disabled 1 JBrowse link 4 103,619,500 104,744,844 RGD:5509061
G Dclk1 doublecortin-like kinase 1 JBrowse link 3 55,242,303 55,539,068 RGD:5509061
G Dcx doublecortin JBrowse link X 143,855,842 143,933,396 RGD:5509061
G Dner delta/notch-like EGF repeat containing JBrowse link 1 84,369,839 84,696,221 RGD:5509061
G Dscam DS cell adhesion molecule JBrowse link 16 96,587,452 97,171,113 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Fas Fas (TNF receptor superfamily member 6) JBrowse link 19 34,290,647 34,327,775 RGD:5509061
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:5509061
G Fkrp fukutin related protein JBrowse link 7 16,809,267 16,816,732 RGD:5509061
G Foxp2 forkhead box P2 JBrowse link 6 14,901,349 15,441,977 RGD:5509061
G Gas1 growth arrest specific 1 JBrowse link 13 60,174,405 60,177,535 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gli1 GLI-Kruppel family member GLI1 JBrowse link 10 127,329,882 127,341,579 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Gnpat glyceronephosphate O-acyltransferase JBrowse link 8 124,863,033 124,890,057 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G L1cam L1 cell adhesion molecule JBrowse link X 73,853,780 73,880,838 RGD:5509061
G Lama1 laminin, alpha 1 JBrowse link 17 67,697,127 67,822,645 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Map1b microtubule-associated protein 1B JBrowse link 13 99,421,464 99,516,602 RGD:5509061
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived JBrowse link 12 12,936,093 12,941,836 RGD:5509061
G Myh10 myosin, heavy polypeptide 10, non-muscle JBrowse link 11 68,691,915 68,816,626 RGD:5509061
G Nbn nibrin JBrowse link 4 15,957,587 15,992,589 RGD:5509061
G Neurod1 neurogenic differentiation 1 JBrowse link 2 79,452,637 79,456,636 RGD:5509061
G Nfia nuclear factor I/A JBrowse link 4 97,578,066 98,118,876 RGD:5509061
G Npas3 neuronal PAS domain protein 3 JBrowse link 12 53,248,026 54,072,173 RGD:5509061
G Nrcam neuronal cell adhesion molecule JBrowse link 12 44,328,786 44,605,194 RGD:5509061
G Ntf3 neurotrophin 3 JBrowse link 6 126,101,412 126,166,772 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Pax5 paired box 5 JBrowse link 4 44,524,748 44,710,694 RGD:5509061
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 JBrowse link 10 43,218,248 43,464,882 RGD:5509061
G Pex2 peroxisomal biogenesis factor 2 JBrowse link 3 5,560,188 5,578,596 RGD:5509061
G Plcb4 phospholipase C, beta 4 JBrowse link 2 135,658,603 136,014,602 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Pomgnt1 protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase JBrowse link 4 116,150,498 116,159,844 RGD:5509061
G Pomk protein-O-mannose kinase JBrowse link 8 25,980,604 25,994,121 RGD:5509061
G Pou1f1 POU domain, class 1, transcription factor 1 JBrowse link 16 65,520,512 65,535,018 RGD:5509061
G Pou3f2 POU domain, class 3, transcription factor 2 JBrowse link 4 22,482,095 22,488,366 RGD:5509061
G Pou3f3 POU domain, class 3, transcription factor 3 JBrowse link 1 42,695,768 42,700,210 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Ric8a RIC8 guanine nucleotide exchange factor A JBrowse link 7 140,857,397 140,863,731 RGD:5509061
G Rora RAR-related orphan receptor alpha JBrowse link 9 68,653,404 69,388,246 RGD:5509061
G Skor2 SKI family transcriptional corepressor 2 JBrowse link 18 76,846,733 76,901,064 RGD:5509061
G Smad2 SMAD family member 2 JBrowse link 18 76,241,090 76,311,748 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 5 139,200,564 139,249,839 RGD:5509061
G Tmem176b transmembrane protein 176B JBrowse link 6 48,833,811 48,845,948 RGD:5509061
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:5509061
G Zbtb18 zinc finger and BTB domain containing 18 JBrowse link 1 177,442,351 177,450,764 RGD:5509061
G Zic1 zinc finger protein of the cerebellum 1 JBrowse link 9 91,358,058 91,366,247 RGD:5509061
G Zic4 zinc finger protein of the cerebellum 4 JBrowse link 9 91,365,631 91,389,351 RGD:5509061
abnormal cerebellar lobule formation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase JBrowse link 2 31,688,244 31,807,093 RGD:5509061
G Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) JBrowse link 1 156,558,590 156,649,619 RGD:5509061
G B4galt2 UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2 JBrowse link 4 117,873,000 117,883,519 RGD:5509061
G Ctnna2 catenin (cadherin associated protein), alpha 2 JBrowse link 6 76,881,637 77,979,815 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Fign fidgetin JBrowse link 2 63,971,508 64,098,038 RGD:5509061
G Gja1 gap junction protein, alpha 1 JBrowse link 10 56,377,300 56,390,419 RGD:5509061
G Gli1 GLI-Kruppel family member GLI1 JBrowse link 10 127,329,882 127,341,579 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 JBrowse link 16 94,744,980 94,997,696 RGD:5509061
G Mid1 midline 1 JBrowse link X 169,685,199 169,990,798 RGD:5509061
G Neurod4 neurogenic differentiation 4 JBrowse link 10 130,268,152 130,280,254 RGD:5509061
G Numb NUMB endocytic adaptor protein JBrowse link 12 83,794,034 83,921,942 RGD:5509061
G Pax5 paired box 5 JBrowse link 4 44,524,748 44,710,694 RGD:5509061
G Plxnb1 plexin B1 JBrowse link 9 109,093,849 109,119,915 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Skor2 SKI family transcriptional corepressor 2 JBrowse link 18 76,846,733 76,901,064 RGD:5509061
G Txnrd1 thioredoxin reductase 1 JBrowse link 10 82,833,951 82,897,724 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
abnormal cerebellar plate morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 10 128,567,523 128,589,635 RGD:5509061
G Frs2 fibroblast growth factor receptor substrate 2 JBrowse link 10 117,070,127 117,148,474 RGD:5509061
G Zfp423 zinc finger protein 423 JBrowse link 8 87,661,810 87,962,053 RGD:5509061
abnormal cerebellum development term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase JBrowse link 2 31,688,244 31,807,093 RGD:5509061
G Atr ataxia telangiectasia and Rad3 related JBrowse link 9 95,857,597 95,953,217 RGD:5509061
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:5509061
G Ccnd1 cyclin D1 JBrowse link 7 144,929,931 144,939,937 RGD:5509061
G Ccnd2 cyclin D2 JBrowse link 6 127,125,162 127,152,188 RGD:5509061
G Cdk5 cyclin-dependent kinase 5 JBrowse link 5 24,407,597 24,423,587 RGD:5509061
G Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) JBrowse link 11 80,477,023 80,481,184 RGD:5509061
G Cdk5r2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) JBrowse link 1 74,855,029 74,857,732 RGD:5509061
G Cep120 centrosomal protein 120 JBrowse link 18 53,681,723 53,745,636 RGD:5509061
G Crk v-crk avian sarcoma virus CT10 oncogene homolog JBrowse link 11 75,679,194 75,708,428 RGD:5509061
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like JBrowse link 16 17,451,985 17,487,440 RGD:5509061
G Ctnnb1 catenin (cadherin associated protein), beta 1 JBrowse link 9 120,933,400 120,960,507 RGD:5509061
G Dab1 disabled 1 JBrowse link 4 103,619,500 104,744,844 RGD:5509061
G Dag1 dystroglycan 1 JBrowse link 9 108,204,861 108,263,977 RGD:5509061
G Dner delta/notch-like EGF repeat containing JBrowse link 1 84,369,839 84,696,221 RGD:5509061
G Dnm1l dynamin 1-like JBrowse link 16 16,312,228 16,359,038 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 JBrowse link 14 32,513,291 32,580,990 RGD:5509061
G Fbxw7 F-box and WD-40 domain protein 7 JBrowse link 3 84,814,990 84,979,198 RGD:5509061
G Fgfr1 fibroblast growth factor receptor 1 JBrowse link 8 25,518,759 25,575,718 RGD:5509061
G Foxc1 forkhead box C1 JBrowse link 13 31,806,646 31,810,635 RGD:5509061
G Frs2 fibroblast growth factor receptor substrate 2 JBrowse link 10 117,070,127 117,148,474 RGD:5509061
G Gas1 growth arrest specific 1 JBrowse link 13 60,174,405 60,177,535 RGD:5509061
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Gli1 GLI-Kruppel family member GLI1 JBrowse link 10 127,329,882 127,341,579 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Gnl3 guanine nucleotide binding protein-like 3 (nucleolar) JBrowse link 14 31,012,433 31,019,131 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G H2az2 H2A.Z histone variant 2 JBrowse link 11 6,427,226 6,444,511 RGD:5509061
G Htt huntingtin JBrowse link 5 34,761,721 34,912,534 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 JBrowse link 16 94,744,980 94,997,696 RGD:5509061
G L1cam L1 cell adhesion molecule JBrowse link X 73,853,780 73,880,838 RGD:5509061
G Lig3 ligase III, DNA, ATP-dependent JBrowse link 11 82,781,109 82,804,274 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Lrp8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor JBrowse link 4 107,802,200 107,876,840 RGD:5509061
G Msx2 msh homeobox 2 JBrowse link 13 53,466,881 53,472,780 RGD:5509061
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived JBrowse link 12 12,936,093 12,941,836 RGD:5509061
G Myh10 myosin, heavy polypeptide 10, non-muscle JBrowse link 11 68,691,915 68,816,626 RGD:5509061
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 11 98,767,932 98,775,377 RGD:5509061
G Nrcam neuronal cell adhesion molecule JBrowse link 12 44,328,786 44,605,194 RGD:5509061
G Ntrk2 neurotrophic tyrosine kinase, receptor, type 2 JBrowse link 13 58,806,472 59,133,970 RGD:5509061
G Numb NUMB endocytic adaptor protein JBrowse link 12 83,794,034 83,921,942 RGD:5509061
G Pdss2 prenyl (solanesyl) diphosphate synthase, subunit 2 JBrowse link 10 43,218,248 43,464,882 RGD:5509061
G Pex13 peroxisomal biogenesis factor 13 JBrowse link 11 23,646,843 23,665,883 RGD:5509061
G Pou1f1 POU domain, class 1, transcription factor 1 JBrowse link 16 65,520,512 65,535,018 RGD:5509061
G Pou3f2 POU domain, class 3, transcription factor 2 JBrowse link 4 22,482,095 22,488,366 RGD:5509061
G Pou3f3 POU domain, class 3, transcription factor 3 JBrowse link 1 42,695,768 42,700,210 RGD:5509061
G Psmg1 proteasome (prosome, macropain) assembly chaperone 1 JBrowse link 16 95,979,933 95,990,960 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Ptf1a pancreas specific transcription factor, 1a JBrowse link 2 19,445,663 19,447,501 RGD:5509061
G Pura purine rich element binding protein A JBrowse link 18 36,280,560 36,292,535 RGD:5509061
G Reln reelin JBrowse link 5 21,884,454 22,344,705 RGD:5509061
G Ric8a RIC8 guanine nucleotide exchange factor A JBrowse link 7 140,857,397 140,863,731 RGD:5509061
G Rnf7 ring finger protein 7 JBrowse link 9 96,470,937 96,478,675 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Skor2 SKI family transcriptional corepressor 2 JBrowse link 18 76,846,733 76,901,064 RGD:5509061
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 5 139,200,564 139,249,839 RGD:5509061
G Tmem176b transmembrane protein 176B JBrowse link 6 48,833,811 48,845,948 RGD:5509061
G Txnrd1 thioredoxin reductase 1 JBrowse link 10 82,833,951 82,897,724 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
G Vldlr very low density lipoprotein receptor JBrowse link 19 27,216,480 27,254,231 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
G Xpa xeroderma pigmentosum, complementation group A JBrowse link 4 46,175,220 46,196,344 RGD:5509061
G Zfp423 zinc finger protein 423 JBrowse link 8 87,661,810 87,962,053 RGD:5509061
G Zic1 zinc finger protein of the cerebellum 1 JBrowse link 9 91,358,058 91,366,247 RGD:5509061
abnormal cerebellum external granule cell layer morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ass1 argininosuccinate synthetase 1 JBrowse link 2 31,470,270 31,520,670 RGD:5509061
G Astn1 astrotactin 1 JBrowse link 1 158,362,102 158,691,786 RGD:5509061
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Bdnf brain derived neurotrophic factor JBrowse link 2 109,674,700 109,727,043 RGD:5509061
G Cacna1a calcium channel, voltage-dependent, P/Q type, alpha 1A subunit JBrowse link 8 84,338,631 84,640,251 RGD:5509061
G Cadps2 Ca2+-dependent activator protein for secretion 2 JBrowse link 6 23,262,773 23,841,175 RGD:5509061
G Casp3 caspase 3 JBrowse link 8 46,617,291 46,639,698 RGD:5509061
G Ccnd2 cyclin D2 JBrowse link 6 127,125,162 127,152,188 RGD:5509061
G Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) JBrowse link 11 80,477,023 80,481,184 RGD:5509061
G Cdk5r2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) JBrowse link 1 74,855,029 74,857,732 RGD:5509061
G Cend1 cell cycle exit and neuronal differentiation 1 JBrowse link 7 141,426,446 141,429,562 RGD:5509061
G Cxcr4 chemokine (C-X-C motif) receptor 4 JBrowse link 1 128,588,199 128,592,299 RGD:5509061
G Ddb1 damage specific DNA binding protein 1 JBrowse link 19 10,605,568 10,629,828 RGD:5509061
G Dner delta/notch-like EGF repeat containing JBrowse link 1 84,369,839 84,696,221 RGD:5509061
G Egfr epidermal growth factor receptor JBrowse link 11 16,752,203 16,913,907 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Fbxo41 F-box protein 41 JBrowse link 6 85,469,574 85,502,994 RGD:5509061
G Fkrp fukutin related protein JBrowse link 7 16,809,267 16,816,732 RGD:5509061
G Foxp2 forkhead box P2 JBrowse link 6 14,901,349 15,441,977 RGD:5509061
G Galt galactose-1-phosphate uridyl transferase JBrowse link 4 41,755,517 41,759,243 RGD:5509061
G Gas1 growth arrest specific 1 JBrowse link 13 60,174,405 60,177,535 RGD:5509061
G Gja1 gap junction protein, alpha 1 JBrowse link 10 56,377,300 56,390,419 RGD:5509061
G Gli1 GLI-Kruppel family member GLI1 JBrowse link 10 127,329,882 127,341,579 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Gpr37l1 G protein-coupled receptor 37-like 1 JBrowse link 1 135,160,250 135,167,681 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Hk2 hexokinase 2 JBrowse link 6 82,725,025 82,774,454 RGD:5509061
G Itgb1 integrin beta 1 (fibronectin receptor beta) JBrowse link 8 128,685,654 128,733,579 RGD:5509061
G Kcnj6 potassium inwardly-rectifying channel, subfamily J, member 6 JBrowse link 16 94,744,980 94,997,696 RGD:5509061
G L1cam L1 cell adhesion molecule JBrowse link X 73,853,780 73,880,838 RGD:5509061
G Lgi1 leucine-rich repeat LGI family, member 1 JBrowse link 19 38,264,687 38,308,939 RGD:5509061
G Lrp8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor JBrowse link 4 107,802,200 107,876,840 RGD:5509061
G Mdm2 transformed mouse 3T3 cell double minute 2 JBrowse link 10 117,688,875 117,710,758 RGD:5509061
G Mdm4 transformed mouse 3T3 cell double minute 4 JBrowse link 1 132,986,105 133,030,587 RGD:5509061
G Mib1 mindbomb E3 ubiquitin protein ligase 1 JBrowse link 18 10,725,625 10,818,578 RGD:5509061
G Mid1 midline 1 JBrowse link X 169,685,199 169,990,798 RGD:5509061
G Mycn v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived JBrowse link 12 12,936,093 12,941,836 RGD:5509061
G Myh10 myosin, heavy polypeptide 10, non-muscle JBrowse link 11 68,691,915 68,816,626 RGD:5509061
G Nbn nibrin JBrowse link 4 15,957,587 15,992,589 RGD:5509061
G Neurod4 neurogenic differentiation 4 JBrowse link 10 130,268,152 130,280,254 RGD:5509061
G Neurog2 neurogenin 2 JBrowse link 3 127,632,733 127,635,636 RGD:5509061
G Nr1d1 nuclear receptor subfamily 1, group D, member 1 JBrowse link 11 98,767,932 98,775,377 RGD:5509061
G Nrcam neuronal cell adhesion molecule JBrowse link 12 44,328,786 44,605,194 RGD:5509061
G Numb NUMB endocytic adaptor protein JBrowse link 12 83,794,034 83,921,942 RGD:5509061
G Pax6 paired box 6 JBrowse link 2 105,668,896 105,698,410 RGD:5509061
G Pex13 peroxisomal biogenesis factor 13 JBrowse link 11 23,646,843 23,665,883 RGD:5509061
G Pex2 peroxisomal biogenesis factor 2 JBrowse link 3 5,560,188 5,578,596 RGD:5509061
G Plcb4 phospholipase C, beta 4 JBrowse link 2 135,658,603 136,014,602 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Pomgnt1 protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase JBrowse link 4 116,150,498 116,159,844 RGD:5509061
G Prmt5 protein arginine N-methyltransferase 5 JBrowse link 14 54,507,182 54,517,470 RGD:5509061
G Ptch1 patched 1 JBrowse link 13 63,508,328 63,573,460 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Pura purine rich element binding protein A JBrowse link 18 36,280,560 36,292,535 RGD:5509061
G Rb1 RB transcriptional corepressor 1 JBrowse link 14 73,192,858 73,325,951 RGD:5509061
G Reln reelin JBrowse link 5 21,884,454 22,344,705 RGD:5509061
G Rora RAR-related orphan receptor alpha JBrowse link 9 68,653,404 69,388,246 RGD:5509061
G Rpl27a ribosomal protein L27A JBrowse link 7 109,519,195 109,522,369 RGD:5509061
G Scn8a sodium channel, voltage-gated, type VIII, alpha JBrowse link 15 100,869,863 101,045,938 RGD:5509061
G Serpine2 serine (or cysteine) peptidase inhibitor, clade E, member 2 JBrowse link 1 79,794,317 79,858,665 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 JBrowse link 10 75,896,769 75,921,614 RGD:5509061
G Srrm3 serine/arginine repetitive matrix 3 JBrowse link 5 135,806,860 135,874,773 RGD:5509061
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 5 139,200,564 139,249,839 RGD:5509061
G Sun2 Sad1 and UNC84 domain containing 2 JBrowse link 15 79,724,068 79,742,536 RGD:5509061
G Tbata thymus, brain and testes associated JBrowse link 10 61,171,964 61,188,841 RGD:5509061
G Thra thyroid hormone receptor alpha JBrowse link 11 98,740,776 98,769,006 RGD:5509061
G Tmem176b transmembrane protein 176B JBrowse link 6 48,833,811 48,845,948 RGD:5509061
G Trio triple functional domain (PTPRF interacting) JBrowse link 15 27,730,649 28,025,848 RGD:5509061
G Trp53 transformation related protein 53 JBrowse link 11 69,580,348 69,591,873 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
G Vldlr very low density lipoprotein receptor JBrowse link 19 27,216,480 27,254,231 RGD:5509061
abnormal pontine flexure morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Adam10 a disintegrin and metallopeptidase domain 10 JBrowse link 9 70,678,944 70,780,229 RGD:5509061
G Erbb3 erb-b2 receptor tyrosine kinase 3 JBrowse link 10 128,567,523 128,589,635 RGD:5509061
abnormal rhombomere 2 morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
abnormal rhombomere 3 morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
G Ldb1 LIM domain binding 1 JBrowse link 19 46,031,525 46,048,145 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
abnormal rhombomere 4 morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) JBrowse link 2 160,363,677 160,367,065 RGD:5509061
abnormal rhombomere 5 morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Gbx2 gastrulation brain homeobox 2 JBrowse link 1 89,927,962 89,931,176 RGD:5509061
G Ldb1 LIM domain binding 1 JBrowse link 19 46,031,525 46,048,145 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) JBrowse link 2 160,363,677 160,367,065 RGD:5509061
abnormal rhombomere boundary morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
abnormal rhombomere morphology term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 JBrowse link 19 37,685,112 37,693,320 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Fbln1 fibulin 1 JBrowse link 15 85,205,949 85,286,294 RGD:5509061
G Fgf8 fibroblast growth factor 8 JBrowse link 19 45,736,798 45,742,941 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
G Ift172 intraflagellar transport 172 JBrowse link 5 31,253,279 31,291,391 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Mafb v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian) JBrowse link 2 160,363,677 160,367,065 RGD:5509061
G Nkx2-2 NK2 homeobox 2 JBrowse link 2 147,176,485 147,195,434 RGD:5509061
G Smad4 SMAD family member 4 JBrowse link 18 73,634,790 73,703,791 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
absent cerebellar foliation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) JBrowse link 11 80,477,023 80,481,184 RGD:5509061
G Cdk5r2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) JBrowse link 1 74,855,029 74,857,732 RGD:5509061
G Cep120 centrosomal protein 120 JBrowse link 18 53,681,723 53,745,636 RGD:5509061
G Cxcr4 chemokine (C-X-C motif) receptor 4 JBrowse link 1 128,588,199 128,592,299 RGD:5509061
G Dab1 disabled 1 JBrowse link 4 103,619,500 104,744,844 RGD:5509061
G Ldb1 LIM domain binding 1 JBrowse link 19 46,031,525 46,048,145 RGD:5509061
G Lhx1 LIM homeobox protein 1 JBrowse link 11 84,517,975 84,525,534 RGD:5509061
G Lhx5 LIM homeobox protein 5 JBrowse link 5 120,431,886 120,441,457 RGD:5509061
G Lmnb2 lamin B2 JBrowse link 10 80,901,363 80,918,245 RGD:5509061
G Nbn nibrin JBrowse link 4 15,957,587 15,992,589 RGD:5509061
G Nfib nuclear factor I/B JBrowse link 4 82,290,173 82,506,751 RGD:5509061
G Plxnb2 plexin B2 JBrowse link 15 89,155,546 89,182,018 RGD:5509061
G Pten phosphatase and tensin homolog JBrowse link 19 32,757,577 32,826,160 RGD:5509061
G Reln reelin JBrowse link 5 21,884,454 22,344,705 RGD:5509061
absent rhombomere 1 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
absent rhombomere 3 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
absent rhombomere 4 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
absent rhombomere 5 term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Hoxb1 homeobox B1 JBrowse link 11 96,365,746 96,368,254 RGD:5509061
decreased rhombomere 1 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Lmx1b LIM homeobox transcription factor 1 beta JBrowse link 2 33,560,965 33,641,208 RGD:5509061
G Wnt1 wingless-type MMTV integration site family, member 1 JBrowse link 15 98,789,857 98,793,830 RGD:5509061
decreased rhombomere 3 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
G Zic2 zinc finger protein of the cerebellum 2 JBrowse link 14 122,475,384 122,480,328 RGD:5509061
decreased rhombomere 4 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
decreased rhombomere 5 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
G Zic2 zinc finger protein of the cerebellum 2 JBrowse link 14 122,475,384 122,480,328 RGD:5509061
decreased rhombomere 6 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Egr2 early growth response 2 JBrowse link 10 67,534,469 67,542,188 RGD:5509061
increased cerebellar foliation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
increased rhombomere 1 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa2 homeobox A2 JBrowse link 6 52,162,417 52,164,831 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
G Otx1 orthodenticle homeobox 1 JBrowse link 11 21,994,764 22,001,651 RGD:5509061
G Otx2 orthodenticle homeobox 2 JBrowse link 14 48,656,781 48,667,644 RGD:5509061
increased rhombomere 3 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
increased rhombomere 4 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
increased rhombomere 5 size term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Rxra retinoid X receptor alpha JBrowse link 2 27,676,445 27,763,319 RGD:5509061
G Rxrb retinoid X receptor beta JBrowse link 17 34,031,812 34,038,403 RGD:5509061
irregular external granule cell layer thickness term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Hk2 hexokinase 2 JBrowse link 6 82,725,025 82,774,454 RGD:5509061
myelencephalic blebs term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Kitl kit ligand JBrowse link 10 100,015,615 100,100,416 RGD:5509061
reduced cerebellar foliation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 c-abl oncogene 1, non-receptor tyrosine kinase JBrowse link 2 31,688,244 31,807,093 RGD:5509061
G Abl2 v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene) JBrowse link 1 156,558,590 156,649,619 RGD:5509061
G Ahi1 Abelson helper integration site 1 JBrowse link 10 20,952,232 21,080,429 RGD:5509061
G Bax BCL2-associated X protein JBrowse link 7 45,461,695 45,466,903 RGD:5509061
G Ccnd1 cyclin D1 JBrowse link 7 144,929,931 144,939,937 RGD:5509061
G Ccnd2 cyclin D2 JBrowse link 6 127,125,162 127,152,188 RGD:5509061
G Cep290 centrosomal protein 290 JBrowse link 10 100,487,548 100,575,671 RGD:5509061
G Cers1 ceramide synthase 1 JBrowse link 8 70,315,775 70,331,588 RGD:5509061
G Ctnna2 catenin (cadherin associated protein), alpha 2 JBrowse link 6 76,881,637 77,979,815 RGD:5509061
G Dnm1l dynamin 1-like JBrowse link 16 16,312,228 16,359,038 RGD:5509061
G Edil3 EGF-like repeats and discoidin I-like domains 3 JBrowse link 13 88,821,472 89,323,225 RGD:5509061
G Ei24 etoposide induced 2.4 mRNA JBrowse link 9 36,779,153 36,797,334 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G Ercc6 excision repair cross-complementing rodent repair deficiency, complementation group 6 JBrowse link 14 32,513,291 32,580,990 RGD:5509061
G Foxp2 forkhead box P2 JBrowse link 6 14,901,349 15,441,977 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Khdrbs1 KH domain containing, RNA binding, signal transduction associated 1 JBrowse link 4 129,702,380 129,743,878 RGD:5509061
G Khdrbs2 KH domain containing, RNA binding, signal transduction associated 2 JBrowse link 1 32,172,602 32,705,224 RGD:5509061
G Lmx1a LIM homeobox transcription factor 1 alpha JBrowse link 1 167,688,230 167,848,741 RGD:5509061
G Lrp8 low density lipoprotein receptor-related protein 8, apolipoprotein e receptor JBrowse link 4 107,802,200 107,876,840 RGD:5509061
G Met met proto-oncogene JBrowse link 6 17,463,349 17,573,980 RGD:5509061
G Mib1 mindbomb E3 ubiquitin protein ligase 1 JBrowse link 18 10,725,625 10,818,578 RGD:5509061
G Pex13 peroxisomal biogenesis factor 13 JBrowse link 11 23,646,843 23,665,883 RGD:5509061
G Pole4 polymerase (DNA-directed), epsilon 4 (p12 subunit) JBrowse link 6 82,616,532 82,653,043 RGD:5509061
G Ptk2 PTK2 protein tyrosine kinase 2 JBrowse link 15 73,205,102 73,423,820 RGD:5509061
G Rora RAR-related orphan receptor alpha JBrowse link 9 68,653,404 69,388,246 RGD:5509061
G Skor2 SKI family transcriptional corepressor 2 JBrowse link 18 76,846,733 76,901,064 RGD:5509061
G Sun1 Sad1 and UNC84 domain containing 1 JBrowse link 5 139,200,564 139,249,839 RGD:5509061
G Sun2 Sad1 and UNC84 domain containing 2 JBrowse link 15 79,724,068 79,742,536 RGD:5509061
G Unc5c unc-5 netrin receptor C JBrowse link 3 141,465,564 141,834,924 RGD:5509061
G Vldlr very low density lipoprotein receptor JBrowse link 19 27,216,480 27,254,231 RGD:5509061
G Xpa xeroderma pigmentosum, complementation group A JBrowse link 4 46,175,220 46,196,344 RGD:5509061
G Zfp423 zinc finger protein 423 JBrowse link 8 87,661,810 87,962,053 RGD:5509061
G Zic1 zinc finger protein of the cerebellum 1 JBrowse link 9 91,358,058 91,366,247 RGD:5509061
rhombomere fusion term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hoxa1 homeobox A1 JBrowse link 6 52,155,367 52,160,007 RGD:5509061
rhombomere transformation term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 JBrowse link 19 37,697,738 37,701,536 RGD:5509061
G Hoxb2 homeobox B2 JBrowse link 11 96,351,632 96,354,020 RGD:5509061
thin external granule cell layer term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp2 acid phosphatase 2, lysosomal JBrowse link 2 91,202,812 91,214,098 RGD:5509061
G Atoh1 atonal bHLH transcription factor 1 JBrowse link 6 64,729,125 64,731,245 RGD:5509061
G Ccnd2 cyclin D2 JBrowse link 6 127,125,162 127,152,188 RGD:5509061
G Cep120 centrosomal protein 120 JBrowse link 18 53,681,723 53,745,636 RGD:5509061
G Cxcl12 chemokine (C-X-C motif) ligand 12 JBrowse link 6 117,168,535 117,181,368 RGD:5509061
G Cxcr4 chemokine (C-X-C motif) receptor 4 JBrowse link 1 128,588,199 128,592,299 RGD:5509061
G En1 engrailed 1 JBrowse link 1 120,602,487 120,607,991 RGD:5509061
G En2 engrailed 2 JBrowse link 5 28,165,696 28,172,190 RGD:5509061
G Gja1 gap junction protein, alpha 1 JBrowse link 10 56,377,300 56,390,419 RGD:5509061
G Gli2 GLI-Kruppel family member GLI2 JBrowse link 1 118,834,061 119,054,405 RGD:5509061
G Gli3 GLI-Kruppel family member GLI3 JBrowse link 13 15,463,723 15,730,026 RGD:5509061
G Gpr37l1 G protein-coupled receptor 37-like 1 JBrowse link 1 135,160,250 135,167,681 RGD:5509061
G Grid2 glutamate receptor, ionotropic, delta 2 JBrowse link 6 63,256,006 64,704,321 RGD:5509061
G Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano JBrowse link 6 113,067,428 113,077,244 RGD:5509061
G Id1 inhibitor of DNA binding 1, HLH protein JBrowse link 2 152,736,251 152,737,410 RGD:5509061
G Id2 inhibitor of DNA binding 2 JBrowse link 12 25,093,799 25,096,092 RGD:5509061
G Id3 inhibitor of DNA binding 3 JBrowse link 4 136,143,822 136,145,392 RGD:5509061
G Inpp4a inositol polyphosphate-4-phosphatase, type I JBrowse link 1 37,299,827 37,410,740 RGD:5509061
G Lmnb2 lamin B2 JBrowse link 10 80,901,363 80,918,245 RGD:5509061
G Marveld1 MARVEL (membrane-associating) domain containing 1 JBrowse link 19 42,147,389 42,151,703 RGD:5509061
G Neurod1 neurogenic differentiation 1 JBrowse link 2 79,452,637 79,456,636 RGD:5509061
G Nsdhl NAD(P) dependent steroid dehydrogenase-like JBrowse link X 72,918,521 72,958,528 RGD:5509061
G Rb1 RB transcriptional corepressor 1 JBrowse link 14 73,192,858 73,325,951 RGD:5509061
G Rpl27a ribosomal protein L27A JBrowse link 7 109,519,195 109,522,369 RGD:5509061
G Shh sonic hedgehog JBrowse link 5 28,456,840 28,467,101 RGD:5509061
G Smo smoothened, frizzled class receptor JBrowse link 6 29,735,497 29,761,366 RGD:5509061
G Txnrd1 thioredoxin reductase 1 JBrowse link 10 82,833,951 82,897,724 RGD:5509061

Term paths to the root
Path 1
Term Annotations click to browse term
  mammalian phenotype 14397
    nervous system phenotype 3989
      abnormal nervous system morphology 3180
        abnormal nervous system development 1384
          abnormal brain development 881
            abnormal hindbrain development 223
              abnormal cerebellum development + 168
              abnormal pontine flexure morphology 2
              abnormal rhombomere morphology + 29
              myelencephalic blebs 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.