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ONTOLOGY REPORT - ANNOTATIONS


Term:G1/S DNA damage checkpoint pathway
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Accession:PW:0000095 term browser browse the term
Definition:Those pathways of DNA damage response that occur during the G1 phase.


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G1/S DNA damage checkpoint pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNE1 cyclin E1 JBrowse link 1 121,688,622 121,697,533 RGD:9068941
altered p53 signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ETS1 ETS proto-oncogene 1, transcription factor JBrowse link 5 6,059,023 6,189,516 RGD:9068941
G MDM2 MDM2 proto-oncogene JBrowse link 10 10,936,288 10,963,118 RGD:9068941
G MDM4 MDM4 regulator of p53 JBrowse link 38 1,055,978 1,122,348 RGD:9068941
G MRE11 MRE11 homolog, double strand break repair nuclease JBrowse link 21 6,448,909 6,528,185 RGD:9068941
G NFYA nuclear transcription factor Y subunit alpha JBrowse link 12 9,827,254 9,854,693 RGD:9068941
G NFYB nuclear transcription factor Y subunit beta JBrowse link 15 42,608,067 42,628,816 RGD:9068941
G NFYC nuclear transcription factor Y subunit gamma JBrowse link 15 2,268,050 2,334,939 RGD:9068941
G PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 20 51,156,887 51,168,131 RGD:9068941
G SREBF2 sterol regulatory element binding transcription factor 2 JBrowse link 10 23,451,923 23,532,765 RGD:9068941
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:9068941
G TP63 tumor protein p63 JBrowse link 34 21,766,861 21,985,095 RGD:9068941
G TP73 tumor protein p73 JBrowse link 5 58,194,385 58,241,159 RGD:9068941
G VDR vitamin D receptor JBrowse link 27 6,852,915 6,909,466 RGD:9068941
p53 signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ABL1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 9 53,118,462 53,262,092 RGD:9068941
G ADGRB1 adhesion G protein-coupled receptor B1 JBrowse link 13 36,627,791 36,649,013 RGD:9068941
G AKT1 AKT serine/threonine kinase 1 JBrowse link 8 72,317,399 72,335,686 RGD:9068941
G APAF1 apoptotic peptidase activating factor 1 JBrowse link 15 38,026,893 38,160,842 RGD:9068941
G ATM ATM serine/threonine kinase JBrowse link 5 24,180,129 24,297,207 RGD:9068941
G ATR ATR serine/threonine kinase JBrowse link 23 38,131,956 38,223,888 RGD:9068941
G BAX BCL2 associated X, apoptosis regulator JBrowse link 1 107,423,388 107,426,464 RGD:9068941
G BBC3 BCL2 binding component 3 JBrowse link 1 108,742,793 108,750,832 RGD:9068941
G BID BH3 interacting domain death agonist JBrowse link 27 45,344,304 45,355,735 RGD:9068941
G BRCA1 BRCA1 DNA repair associated JBrowse link 9 19,958,941 20,025,494 RGD:9068941
G CASP3 caspase 3 JBrowse link 16 45,920,074 45,940,507 RGD:9068941
G CASP8 caspase 8 JBrowse link 37 10,362,071 10,402,108 RGD:9068941
G CASP9 caspase 9 JBrowse link 2 82,033,759 82,076,710 RGD:9068941
G CCNA2 cyclin A2 JBrowse link 19 18,317,866 18,324,592 RGD:9068941
G CCNB1 cyclin B1 JBrowse link 2 54,256,957 54,264,749 RGD:9068941
G CCNB2 cyclin B2 JBrowse link 30 24,040,859 24,063,084 RGD:9068941
G CCNB3 cyclin B3 JBrowse link X 42,951,030 43,041,616 RGD:9068941
G CCND1 cyclin D1 JBrowse link 18 48,501,905 48,509,684 RGD:9068941
G CCND2 cyclin D2 JBrowse link 27 40,563,306 40,593,362 RGD:9068941
G CCND3 cyclin D3 JBrowse link 12 10,593,786 10,688,304 RGD:9068941
G CCNE1 cyclin E1 JBrowse link 1 121,688,622 121,697,533 RGD:9068941
G CCNE2 cyclin E2 JBrowse link 29 39,534,872 39,551,141 RGD:9068941
G CCNG1 cyclin G1 JBrowse link 4 47,800,697 47,808,259 RGD:9068941
G CCNG2 cyclin G2 JBrowse link 32 1,719,325 1,727,769 RGD:9068941
G CD82 CD82 molecule JBrowse link 18 44,658,414 44,707,897 RGD:9068941
G CDK1 cyclin dependent kinase 1 JBrowse link 4 12,884,106 12,899,203 RGD:9068941
G CDK2 cyclin dependent kinase 2 JBrowse link 10 300,863 306,546 RGD:9068941
G CDK4 cyclin dependent kinase 4 JBrowse link 10 1,812,864 1,815,815 RGD:9068941
G CDK6 cyclin dependent kinase 6 JBrowse link 14 18,178,352 18,413,869 RGD:9068941
G CDKN1A cyclin dependent kinase inhibitor 1A JBrowse link 12 5,746,898 5,755,103 RGD:9068941
G CHEK1 checkpoint kinase 1 JBrowse link 5 8,878,511 8,910,626 RGD:9068941
G CHEK2 checkpoint kinase 2 JBrowse link 26 22,052,256 22,145,675 RGD:9068941
G COP1 COP1 E3 ubiquitin ligase JBrowse link 7 23,320,483 23,565,093 RGD:9068941
G CREBBP CREB binding protein JBrowse link 6 37,410,201 37,536,688 RGD:9068941
G CSE1L chromosome segregation 1 like JBrowse link 24 35,759,556 35,806,090 RGD:9068941
G CSNK1A1 casein kinase 1 alpha 1 JBrowse link 4 59,435,530 59,485,591 RGD:9068941
G CSNK1D casein kinase 1 delta JBrowse link 9 83,395 110,309 RGD:9068941
G CSNK1E casein kinase 1 epsilon JBrowse link 10 26,386,646 26,412,429 RGD:9068941
G CSNK1G1 casein kinase 1 gamma 1 JBrowse link 30 28,661,726 28,832,193 RGD:9068941
G CSNK1G2 casein kinase 1 gamma 2 JBrowse link 20 57,015,019 57,042,269 RGD:9068941
G CSNK1G3 casein kinase 1 gamma 3 JBrowse link 11 13,357,816 13,465,708 RGD:9068941
G CYCS cytochrome c, somatic JBrowse link 14 38,579,446 38,581,983 RGD:9068941
G DAXX death domain associated protein JBrowse link 12 2,755,960 2,760,687 RGD:9068941
G DDB2 damage specific DNA binding protein 2 JBrowse link 18 42,354,201 42,378,463 RGD:9068941
G DYRK2 dual specificity tyrosine phosphorylation regulated kinase 2 JBrowse link 10 9,982,245 9,994,327 RGD:9068941
G E4F1 E4F transcription factor 1 JBrowse link 6 38,743,346 38,752,427 RGD:9068941
G EI24 EI24 autophagy associated transmembrane protein JBrowse link 5 8,949,886 8,963,967 RGD:9068941
G EP300 E1A binding protein p300 JBrowse link 10 24,076,538 24,156,708 RGD:9068941
G FAS Fas cell surface death receptor JBrowse link 26 38,738,811 38,763,298 RGD:9068941
G FBXO11 F-box protein 11 JBrowse link 10 49,838,003 49,864,211 RGD:9068941
G GADD45A growth arrest and DNA damage inducible alpha JBrowse link 6 77,393,026 77,396,473 RGD:9068941
G GADD45B growth arrest and DNA damage inducible beta JBrowse link 20 56,627,915 56,629,960 RGD:9068941
G GADD45G growth arrest and DNA damage inducible gamma JBrowse link 1 96,745,001 96,746,535 RGD:9068941
G GSK3B glycogen synthase kinase 3 beta JBrowse link 33 23,458,369 23,659,878 RGD:9068941
G GTSE1 G2 and S-phase expressed 1 JBrowse link 10 19,863,064 19,883,972 RGD:9068941
G HDAC1 histone deacetylase 1 JBrowse link 2 68,901,339 68,936,473 RGD:9068941
G HIPK2 homeodomain interacting protein kinase 2 JBrowse link 16 9,066,957 9,256,916 RGD:9068941
G HUWE1 HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1 JBrowse link X 45,234,666 45,409,641 RGD:9068941
G IGF1 insulin like growth factor 1 JBrowse link 15 41,203,320 41,275,964 RGD:9068941
G IGFBP3 insulin like growth factor binding protein 3 JBrowse link 16 1,021,855 1,027,604 RGD:9068941
G KAT2A lysine acetyltransferase 2A JBrowse link 9 20,778,434 20,787,057 RGD:9068941
G KAT2B lysine acetyltransferase 2B JBrowse link 23 23,166,722 23,242,447 RGD:9068941
G KAT5 lysine acetyltransferase 5 JBrowse link 18 51,499,615 51,507,434 RGD:9068941
G KAT8 lysine acetyltransferase 8 JBrowse link 6 17,114,528 17,125,287 RGD:9068941
G KMT5A lysine methyltransferase 5A JBrowse link 26 6,120,500 6,190,178 RGD:9068941
G MAPK14 mitogen-activated protein kinase 14 JBrowse link 12 5,145,647 5,221,558 RGD:9068941
G MAPK8 mitogen-activated protein kinase 8 JBrowse link 28 323,361 410,367 RGD:9068941
G MAPK9 mitogen-activated protein kinase 9 JBrowse link 11 1,443,528 1,480,501 RGD:9068941
G MDM2 MDM2 proto-oncogene JBrowse link 10 10,936,288 10,963,118 RGD:9068941
G MDM4 MDM4 regulator of p53 JBrowse link 38 1,055,978 1,122,348 RGD:9068941
G MUC1 mucin 1, cell surface associated JBrowse link 7 42,338,939 42,344,690 RGD:9068941
G NEDD8 NEDD8 ubiquitin like modifier JBrowse link 8 4,202,621 4,213,090 RGD:9068941
G PERP p53 apoptosis effector related to PMP22 JBrowse link 1 30,418,847 30,435,287 RGD:9068941
G PIN1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 20 51,156,887 51,168,131 RGD:9068941
G PMAIP1 phorbol-12-myristate-13-acetate-induced protein 1 JBrowse link 1 16,469,793 16,472,910 RGD:9068941
G POU4F1 POU class 4 homeobox 1 JBrowse link 22 31,992,657 31,997,066 RGD:9068941
G POU4F2 POU class 4 homeobox 2 JBrowse link 15 45,030,818 45,034,446 RGD:9068941
G PPM1D protein phosphatase, Mg2+/Mn2+ dependent 1D JBrowse link 9 35,856,277 35,914,096 RGD:9068941
G PPP1R13B protein phosphatase 1 regulatory subunit 13B JBrowse link 8 71,462,338 71,518,918 RGD:9068941
G PPP1R13L protein phosphatase 1 regulatory subunit 13 like JBrowse link 1 110,149,393 110,166,029 RGD:9068941
G PPP2CA protein phosphatase 2 catalytic subunit alpha JBrowse link 11 22,388,327 22,410,052 RGD:9068941
G PRKCD protein kinase C delta JBrowse link 20 36,723,491 36,751,982 RGD:9068941
G PRMT5 protein arginine methyltransferase 5 JBrowse link 8 3,248,349 3,257,567 RGD:9068941
G PTEN phosphatase and tensin homolog JBrowse link 26 37,853,148 37,913,176 RGD:9068941
G PTPA protein phosphatase 2 phosphatase activator JBrowse link 9 54,535,186 54,568,632 RGD:9068941
G RASSF1 Ras association domain family member 1 JBrowse link 20 39,014,639 39,023,393 RGD:9068941
G RCHY1 ring finger and CHY zinc finger domain containing 1 JBrowse link 32 67,136 94,053 RGD:9068941
G RPL11 ribosomal protein L11 JBrowse link 2 75,781,210 75,785,614 RGD:9068941
G RPL23 ribosomal protein L23 JBrowse link 9 23,397,143 23,403,060 RGD:9068941
G RPL5 ribosomal protein L5 JBrowse link 6 56,207,171 56,216,030 RGD:9068941
G RRM2 ribonucleotide reductase regulatory subunit M2 JBrowse link 17 7,106,515 7,113,868 RGD:9068941
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B JBrowse link 13 3,774,725 3,838,576 RGD:9068941
G SERPINB5 serpin family B member 5 JBrowse link 1 13,566,982 13,638,839 RGD:9068941
G SERPINE1 serpin family E member 1 JBrowse link 6 8,719,547 8,727,160 RGD:9068941
G SESN1 sestrin 1 JBrowse link 12 65,958,995 66,057,369 RGD:9068941
G SESN2 sestrin 2 JBrowse link 2 72,151,464 72,168,861 RGD:9068941
G SESN3 sestrin 3 JBrowse link 21 5,827,957 5,899,540 RGD:9068941
G SETD7 SET domain containing 7, histone lysine methyltransferase JBrowse link 19 3,186,620 3,229,305 RGD:9068941
G SFN stratifin JBrowse link 2 73,268,289 73,269,663 RGD:9068941
G SHISA5 shisa family member 5 JBrowse link 20 40,604,183 40,624,607 RGD:9068941
G SIAH1 siah E3 ubiquitin protein ligase 1 JBrowse link 2 66,630,795 66,709,497 RGD:9068941
G SIRT1 sirtuin 1 JBrowse link 4 19,188,616 19,220,031 RGD:9068941
G SKP2 S-phase kinase associated protein 2 JBrowse link 4 72,352,966 72,386,469 RGD:9068941
G SMYD2 SET and MYND domain containing 2 JBrowse link 7 12,281,581 12,331,294 RGD:9068941
G STEAP3 STEAP3 metalloreductase JBrowse link 19 30,745,910 30,795,310 RGD:9068941
G THBS1 thrombospondin 1 JBrowse link 30 6,770,212 6,786,875 RGD:9068941
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:9068941
G TP53BP2 tumor protein p53 binding protein 2 JBrowse link 7 40,296,278 40,329,818 RGD:9068941
G TP53I3 tumor protein p53 inducible protein 3 JBrowse link 17 18,560,123 18,566,588 RGD:9068941
G TP73 tumor protein p73 JBrowse link 5 58,194,385 58,241,159 RGD:9068941
G TRIM28 tripartite motif containing 28 JBrowse link 1 99,408,920 99,415,432 RGD:9068941
G TSC2 TSC complex subunit 2 JBrowse link 6 38,865,509 38,898,977 RGD:9068941
G TTC5 tetratricopeptide repeat domain 5 JBrowse link 15 17,653,008 17,670,231 RGD:9068941
G UBE2D1 ubiquitin conjugating enzyme E2 D1 JBrowse link 4 10,521,818 10,551,818 RGD:9068941
G USP7 ubiquitin specific peptidase 7 JBrowse link 6 33,277,328 33,315,601 RGD:9068941
G YBX1 Y-box binding protein 1 JBrowse link 15 646,301 666,347 RGD:9068941
G YY1 YY1 transcription factor JBrowse link 8 68,539,511 68,572,796 RGD:9068941
G ZMAT3 zinc finger matrin-type 3 JBrowse link 34 12,527,909 12,575,409 RGD:9068941
G ZNF385A zinc finger protein 385A JBrowse link 27 928,250 948,275 RGD:9068941
G ZNF420 zinc finger protein 420 JBrowse link 1 115,513,025 115,565,520 RGD:9068941
G ZNHIT1 zinc finger HIT-type containing 1 JBrowse link 6 8,658,288 8,663,511 RGD:9068941
p53-dependent G1/S DNA damage checkpoint pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNE1 cyclin E1 JBrowse link 1 121,688,622 121,697,533 RGD:9068941
G TP53 tumor protein p53 JBrowse link 5 32,561,406 32,565,149 RGD:9068941

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5642
    regulatory pathway 3435
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1604
        cell cycle pathway 222
          cell cycle checkpoint pathway 130
            G1/S DNA damage checkpoint pathway 129
              p53-dependent G1/S DNA damage checkpoint pathway + 129
              p53-independent G1/S DNA damage checkpoint pathway 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.