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ONTOLOGY REPORT - ANNOTATIONS


Term:transcription pathway
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Accession:PW:0000100 term browser browse the term
Definition:The pathways governing and/or regulating DNA transcription and gene expression. DNA transcription into coding and non-coding RNA is accomplished by one prokaryotic and several eukaryotic RNA polymerases. Transcription-coupled repair handles DNA lesions that interfere with the progression of RNA polymerases. Splicing of nascent RNA is thought to be predominantly co-transcriptional. Signaling pathways mediated by various transcription factors are involved in the regulation of gene expression.


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3'-end pre-mRNA processing pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:9681741
RGD:9681742
G Cpsf1 cleavage and polyadenylation specific factor 1 JBrowse link 7 117,661,779 117,672,373 RGD:9681741
RGD:9681742
G Cpsf2 cleavage and polyadenylation specific factor 2 JBrowse link 6 125,870,372 125,898,039 RGD:9681741
RGD:9681742
G Cpsf3 cleavage and polyadenylation specific factor 3 JBrowse link 6 43,363,792 43,391,712 RGD:9681741
RGD:9681742
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:9681741
RGD:9681742
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link 1 226,572,399 226,596,185 RGD:9681741
RGD:9681742
G Cstf1 cleavage stimulation factor subunit 1 JBrowse link 3 170,380,413 170,392,162 RGD:9681741
RGD:9681742
G Cstf2 cleavage stimulation factor subunit 2 JBrowse link X 104,882,726 104,909,746 RGD:9681741
RGD:9681742
G Cstf2t cleavage stimulation factor subunit 2, tau variant JBrowse link 1 249,574,954 249,578,520 RGD:9681741
RGD:9681742
G Cstf3 cleavage stimulation factor subunit 3 JBrowse link 3 94,530,586 94,603,378 RGD:9681741
RGD:9681742
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:9681741
G Fip1l1 factor interacting with PAPOLA and CPSF1 JBrowse link 14 36,150,381 36,208,395 RGD:9681741
RGD:9681742
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:9681741
RGD:9681742
G Pabpn1 poly(A) binding protein, nuclear 1 JBrowse link 15 33,555,640 33,560,251 RGD:9681742
G Papola poly (A) polymerase alpha JBrowse link 6 129,609,068 129,662,002 RGD:9681742
G Papolb poly(A) polymerase beta JBrowse link 12 14,112,426 14,114,772 RGD:9681742
G Papolg poly(A) polymerase gamma JBrowse link 14 108,624,359 108,658,371 RGD:9681742
G Pcf11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 1 157,463,014 157,494,134 RGD:9681741
RGD:9681742
G Sympk symplekin JBrowse link 1 79,931,097 79,959,461 RGD:9681741
RGD:9681742
G Wdr33 WD repeat domain 33 JBrowse link 18 24,584,832 24,689,681 RGD:9681741
RGD:9681742
G Xrn2 5'-3' exoribonuclease 2 JBrowse link 3 141,224,858 141,298,272 RGD:9681741
5'-end pre-mRNA capping pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:9684851
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:9684851
G Ramac RNA guanine-7 methyltransferase activating subunit JBrowse link 1 143,583,675 143,589,563 RGD:9684851
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link 5 48,561,325 48,779,214 RGD:9684851
G Rnmt RNA (guanine-7-) methyltransferase JBrowse link 18 64,084,746 64,108,246 RGD:9684851
aldosterone signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atp1a1 ATPase Na+/K+ transporting subunit alpha 1 JBrowse link 2 204,003,742 204,032,023 RGD:6907045
G Atp1a2 ATPase Na+/K+ transporting subunit alpha 2 JBrowse link 13 90,651,682 90,676,629 RGD:6907045
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 JBrowse link 1 81,852,423 81,881,565 RGD:6907045
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 JBrowse link 13 90,605,792 90,642,032 RGD:6907045
G Atp1b1 ATPase Na+/K+ transporting subunit beta 1 JBrowse link 13 82,737,161 82,757,681 RGD:6907045
G Atp1b2 ATPase Na+/K+ transporting subunit beta 2 JBrowse link 10 56,205,622 56,211,879 RGD:6907045
G Atp1b3 ATPase Na+/K+ transporting subunit beta 3 JBrowse link 8 104,190,032 104,221,342 RGD:6907045
G Atp1b4 ATPase Na+/K+ transporting family member beta 4 JBrowse link X 124,631,544 124,652,520 RGD:6907045
G Casp8ap2 caspase 8 associated protein 2 JBrowse link 5 47,853,699 47,891,147 RGD:7421504
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:7421504
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:7421504
G Dhx9 DExH-box helicase 9 JBrowse link 13 70,885,503 70,922,278 RGD:7421504
G Ell elongation factor for RNA polymerase II JBrowse link 16 20,594,129 20,641,441 RGD:7421504
G Faf1 Fas associated factor 1 JBrowse link 5 129,370,767 129,738,393 RGD:7421504
G Fkbp4 FKBP prolyl isomerase 4 JBrowse link 4 161,748,993 161,757,447 RGD:7421504
G Fkbp5 FKBP prolyl isomerase 5 JBrowse link 20 7,976,704 8,097,290 RGD:7421504
G Fxyd2 FXYD domain-containing ion transport regulator 2 JBrowse link 8 49,710,334 49,717,492 RGD:6907045
G Fxyd4 FXYD domain-containing ion transport regulator 4 JBrowse link 4 149,984,206 149,988,744 RGD:6907045
G Hsd11b1 hydroxysteroid 11-beta dehydrogenase 1 JBrowse link 13 111,946,626 111,996,536 RGD:6907045
G Hsd11b2 hydroxysteroid 11-beta dehydrogenase 2 JBrowse link 19 37,476,083 37,481,326 RGD:6907045
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:7421504
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:7421504
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6907045
G Ins1 insulin 1 JBrowse link 1 272,799,784 272,800,351 RGD:6907045
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:6907045
G Insr insulin receptor JBrowse link 12 1,682,527 1,816,414 RGD:6907045
G Irs1 insulin receptor substrate 1 JBrowse link 9 88,033,668 88,086,488 RGD:6907045
G Irs2 insulin receptor substrate 2 JBrowse link 16 83,824,515 83,848,569 RGD:6907045
G Irs3 insulin receptor substrate 3 JBrowse link 12 22,120,305 22,125,103 RGD:6907045
G Irs4 insulin receptor substrate 4 JBrowse link X 113,003,824 113,018,088 RGD:6907045
G Jak2 Janus kinase 2 JBrowse link 1 247,398,667 247,457,521 RGD:1641841
G Kcnj1 potassium inwardly-rectifying channel, subfamily J, member 1 JBrowse link 8 33,490,280 33,519,127 RGD:6907045
G Kras KRAS proto-oncogene, GTPase JBrowse link 4 179,482,562 179,515,483 RGD:6907045
G Mapk1 mitogen activated protein kinase 1 JBrowse link 11 88,203,863 88,273,301 RGD:6907045
G Mapk3 mitogen activated protein kinase 3 JBrowse link 1 198,192,773 198,198,975 RGD:6907045
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:7421504
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:7421504
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:7421504
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:7421504
G Nedd4l NEDD4 like E3 ubiquitin protein ligase JBrowse link 18 60,392,376 60,719,720 RGD:6907045
G Nfyc nuclear transcription factor Y subunit gamma JBrowse link 5 139,687,442 139,760,154 RGD:7421504
G Nr3c2 nuclear receptor subfamily 3, group C, member 2 JBrowse link 19 34,408,275 34,761,003 RGD:6907045
RGD:7421504
G Pdpk1 3-phosphoinositide dependent protein kinase-1 JBrowse link 10 13,446,373 13,525,248 RGD:6907045
G Pias1 protein inhibitor of activated STAT, 1 JBrowse link 8 67,771,720 67,869,015 RGD:7421504
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:6907045
G Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit beta JBrowse link 8 107,275,849 107,381,088 RGD:6907045
G Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta JBrowse link 5 166,602,053 166,628,028 RGD:6907045
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:6907045
G Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 JBrowse link 16 20,415,109 20,424,982 RGD:6907045
G Pik3r3 phosphoinositide-3-kinase regulatory subunit 3 JBrowse link 5 135,069,972 135,145,633 RGD:6907045
G Pik3r5 phosphoinositide-3-kinase, regulatory subunit 5 JBrowse link 10 55,013,686 55,078,986 RGD:6907045
G Ppargc1a PPARG coactivator 1 alpha JBrowse link 14 63,095,291 63,190,688 RGD:7421504
G Prkca protein kinase C, alpha JBrowse link 10 96,186,509 96,585,168 RGD:6907045
G Prkcb protein kinase C, beta JBrowse link 1 192,233,569 192,575,339 RGD:6907045
G Prkcg protein kinase C, gamma JBrowse link 1 64,407,098 64,433,698 RGD:6907045
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:7421504
G Scnn1a sodium channel epithelial 1 subunit alpha JBrowse link 4 157,834,339 157,860,472 RGD:6907045
G Scnn1b sodium channel epithelial 1 subunit beta JBrowse link 1 191,829,547 191,883,991 RGD:6907045
G Scnn1g sodium channel epithelial 1 subunit gamma JBrowse link 1 191,704,397 191,738,271 RGD:6907045
G Sfn stratifin JBrowse link 5 151,823,422 151,824,937 RGD:6907045
G Sgk1 serum/glucocorticoid regulated kinase 1 JBrowse link 1 24,185,451 24,302,309 RGD:6907045
G Slc9a3r2 SLC9A3 regulator 2 JBrowse link 10 14,003,330 14,015,066 RGD:6907045
G Ube2i ubiquitin-conjugating enzyme E2I JBrowse link 10 14,618,615 14,639,274 RGD:7421504
altered androgen signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:2326139
RGD:8693397
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:8693397
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:8693397
altered DNA modification pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:9588971
altered hypoxia inducible factor pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vhl von Hippel-Lindau tumor suppressor JBrowse link 4 145,580,869 145,587,835 RGD:6907133
altered p53 signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ets1 ETS proto-oncogene 1, transcription factor JBrowse link 8 33,756,634 33,879,625 RGD:8663430
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:2316186
RGD:8663434
G Mdm4 MDM4 regulator of p53 JBrowse link 13 49,786,776 49,828,780 RGD:8663434
G Mre11 MRE11 homolog, double strand break repair nuclease JBrowse link 8 13,304,355 13,350,329 RGD:8663431
G Nfya nuclear transcription factor Y subunit alpha JBrowse link 9 14,551,752 14,577,002 RGD:8663431
RGD:8663430
G Nfyb nuclear transcription factor Y subunit beta JBrowse link 7 27,081,667 27,097,481 RGD:8663431
RGD:8663430
G Nfyc nuclear transcription factor Y subunit gamma JBrowse link 5 139,687,442 139,760,154 RGD:8663431
RGD:8663430
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 8 21,669,236 21,680,615 RGD:8663430
G Srebf2 sterol regulatory element binding transcription factor 2 JBrowse link 7 123,381,082 123,438,605 RGD:8663431
RGD:8663430
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:2316186
RGD:8693397
RGD:8663430
RGD:8663431
RGD:5490966
RGD:5133242
RGD:4143515
G Tp63 tumor protein p63 JBrowse link 11 78,234,853 78,456,559 RGD:8663431
RGD:8663430
G Tp73 tumor protein p73 JBrowse link 5 171,355,876 171,415,354 RGD:8663431
RGD:8663430
G Vdr vitamin D receptor JBrowse link 7 139,344,452 139,394,138 RGD:8663430
altered SWI/SNF family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:8694154
G Arid1a AT-rich interaction domain 1A JBrowse link 5 151,904,687 151,977,973 RGD:8694154
G Arid1b AT-rich interaction domain 1B JBrowse link 1 45,923,119 46,232,301 RGD:8694154
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:8694154
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:8694154
androgen signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:2326084
G Carm1 coactivator-associated arginine methyltransferase 1 JBrowse link 8 22,577,723 22,622,555 RGD:2326123
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:2326123
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 JBrowse link 19 22,569,999 22,588,143 RGD:2326084
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:2326123
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:2326084
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:2326084
G Hspa8 heat shock protein family A (Hsp70) member 8 JBrowse link 8 44,989,401 44,993,261 RGD:2326084
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:2326123
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:2326123
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:2326123
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:2326123
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:2326123
G Pias2 protein inhibitor of activated STAT, 2 JBrowse link 18 73,479,863 73,524,956 RGD:70792
G Prmt1 protein arginine methyltransferase 1 JBrowse link 1 100,971,132 100,980,411 RGD:2326123
G St13 ST13, Hsp70 interacting protein JBrowse link 7 122,585,770 122,635,731 RGD:2326084
G Stip1 stress-induced phosphoprotein 1 JBrowse link 1 222,274,133 222,293,139 RGD:2326084
aryl hydrocarbon receptor signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ahr aryl hydrocarbon receptor JBrowse link 6 54,963,990 55,001,806 RGD:634668
G Arnt aryl hydrocarbon receptor nuclear translocator JBrowse link 2 196,594,178 196,651,486 RGD:634668
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 JBrowse link 1 146,399,217 146,556,437 RGD:631760
bile acid signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb11 ATP binding cassette subfamily B member 11 JBrowse link 3 55,480,024 55,587,946 RGD:15090804
G Abcc2 ATP binding cassette subfamily C member 2 JBrowse link 1 263,554,426 263,612,556 RGD:15090804
G Abcc4 ATP binding cassette subfamily C member 4 JBrowse link 15 103,695,415 103,927,980 RGD:15045612
G Abcg5 ATP binding cassette subfamily G member 5 JBrowse link 6 7,935,771 7,961,207 RGD:15045610
G Abcg8 ATP binding cassette subfamily G member 8 JBrowse link 6 7,961,413 7,980,708 RGD:15045610
G Acat2 acetyl-CoA acetyltransferase 2 JBrowse link 1 47,972,399 47,992,654 RGD:15045610
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 JBrowse link 4 123,516,553 123,564,067 RGD:15045612
G Cideb cell death-inducing DFFA-like effector b JBrowse link 15 34,439,844 34,444,244 RGD:15045610
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 JBrowse link 9 81,968,285 81,998,213 RGD:15045601
G Cyp7a1 cytochrome P450 family 7 subfamily A member 1 JBrowse link 5 19,358,734 19,368,431 RGD:15045601
RGD:15045612
G Cyp8b1 cytochrome P450 family 8 subfamily B member 1 JBrowse link 8 130,548,418 130,550,388 RGD:15045610
G Dgat2 diacylglycerol O-acyltransferase 2 JBrowse link 1 164,113,459 164,143,818 RGD:15045610
G Hmgcr 3-hydroxy-3-methylglutaryl-CoA reductase JBrowse link 2 27,480,224 27,500,654 RGD:15045610
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 JBrowse link 3 80,004,130 80,014,197 RGD:15045610
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 JBrowse link 7 30,003,429 30,162,095 RGD:15042870
RGD:15090804
RGD:15092071
RGD:15045610
RGD:15045612
RGD:15045601
RGD:15042872
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:15090804
G Slc10a1 solute carrier family 10 member 1 JBrowse link 6 104,617,730 104,631,355 RGD:15090804
G Slco1a4 solute carrier organic anion transporter family, member 1a4 JBrowse link 4 175,969,549 176,026,227 RGD:15090804
CHD family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Chd3 chromodomain helicase DNA binding protein 3 JBrowse link 10 55,943,467 55,970,417 RGD:9585661
G Chd4 chromodomain helicase DNA binding protein 4 JBrowse link 4 157,612,531 157,645,660 RGD:9585661
G Chd5 chromodomain helicase DNA binding protein 5 JBrowse link 5 169,519,212 169,572,059 RGD:9585661
G Gatad2a GATA zinc finger domain containing 2A JBrowse link 16 21,177,793 21,267,768 RGD:9585661
G Gatad2b GATA zinc finger domain containing 2B JBrowse link 2 189,654,871 189,735,056 RGD:9585661
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:9585661
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:9585661
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:9585661
G Mbd3 methyl-CpG binding domain protein 3 JBrowse link 7 12,179,046 12,186,251 RGD:9585661
G Mta1 metastasis associated 1 JBrowse link 6 137,911,302 137,950,066 RGD:9585661
G Mta2 metastasis associated 1 family, member 2 JBrowse link 1 225,140,863 225,149,584 RGD:9585661
G Mta3 metastasis associated 1 family, member 3 JBrowse link 6 6,904,449 7,036,929 RGD:9585661
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:9585661
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:9585661
cortisol signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:5147892
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 JBrowse link 19 22,569,999 22,588,143 RGD:5144125
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:5147892
G Fkbp4 FKBP prolyl isomerase 4 JBrowse link 4 161,748,993 161,757,447 RGD:5144125
G Fkbp5 FKBP prolyl isomerase 5 JBrowse link 20 7,976,704 8,097,290 RGD:5144125
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:5144125
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:5144125
G Hspa4 heat shock protein family A (Hsp70) member 4 JBrowse link 10 38,601,624 38,642,397 RGD:5144125
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:5147892
G Med14 mediator complex subunit 14 JBrowse link X 10,964,035 11,082,403 RGD:5147892
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:5144138
RGD:5147892
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:5144138
RGD:5147892
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:5144138
RGD:5147892
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:5147413
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:5147413
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 JBrowse link 18 31,728,373 32,704,022 RGD:5144125
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:5144125
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:5147892
G Stip1 stress-induced phosphoprotein 1 JBrowse link 1 222,274,133 222,293,139 RGD:5144125
DNA modification pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cxxc1 CXXC finger protein 1 JBrowse link 18 70,192,520 70,197,871 RGD:9479164
G Dnmt1 DNA methyltransferase 1 JBrowse link 8 21,922,515 21,968,495 RGD:8695943
RGD:8695944
G Dnmt3a DNA methyltransferase 3 alpha JBrowse link 6 28,205,375 28,346,052 RGD:8695943
RGD:8695944
G Dnmt3b DNA methyltransferase 3 beta JBrowse link 3 149,131,541 149,170,061 RGD:8695943
RGD:8695944
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:9479164
G Kdm2b lysine demethylase 2B JBrowse link 12 39,021,924 39,161,954 RGD:9479164
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:9479164
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4
82,506
6,083,650
109,986
6,294,413
RGD:9479164
G Mbd1 methyl-CpG binding domain protein 1 JBrowse link 18 70,248,568 70,263,190 RGD:8695954
G Mbd2 methyl-CpG binding domain protein 2 JBrowse link 18 65,814,026 65,885,115 RGD:8695954
G Mbd4 methyl-CpG binding domain 4 DNA glycosylase JBrowse link 4 147,744,673 147,756,462 RGD:8695954
G Mecp2 methyl CpG binding protein 2 JBrowse link X 156,650,389 156,713,813 RGD:8695954
G Nanog Nanog homeobox JBrowse link 4 155,531,906 155,539,268 RGD:8695944
G Ogt O-linked N-acetylglucosamine (GlcNAc) transferase JBrowse link X 71,540,870 71,585,906 RGD:8695944
G Pparg peroxisome proliferator-activated receptor gamma JBrowse link 4 147,274,055 147,399,383 RGD:8695944
G Sin3a SIN3 transcription regulator family member A JBrowse link 8 61,748,590 61,803,314 RGD:8695944
G Spi1 Spi-1 proto-oncogene JBrowse link 3 79,918,127 79,937,708 RGD:8695944
G Tet1 tet methylcytosine dioxygenase 1 JBrowse link 20 27,359,122 27,438,039 RGD:8695943
RGD:8695944
G Tet2 tet methylcytosine dioxygenase 2 JBrowse link 2 238,719,389 238,802,975 RGD:8695943
RGD:8695944
G Tet3 tet methylcytosine dioxygenase 3 JBrowse link 4 115,060,702 115,160,800 RGD:8695943
RGD:9479164
RGD:8695944
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:8695954
G Uhrf2 ubiquitin like with PHD and ring finger domains 2 JBrowse link 1 248,228,496 248,291,984 RGD:8695954
G Zbtb33 zinc finger and BTB domain containing 33 JBrowse link X 124,319,299 124,326,506 RGD:8695954
G Zbtb38 zinc finger and BTB domain containing 38 JBrowse link 8 104,566,999 104,694,890 RGD:8695954
G Zbtb4 zinc finger and BTB domain containing 4 JBrowse link 10 56,367,586 56,388,296 RGD:8695954
G Zfp57 zinc finger protein 57 JBrowse link 20 2,014,177 2,020,488 RGD:8695954
estrogen signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ascc1 activating signal cointegrator 1 complex subunit 1 JBrowse link 20 29,558,330 29,648,899 RGD:5128512
G Calcoco1 calcium binding and coiled coil domain 1 JBrowse link 7 144,307,562 144,322,253 RGD:5128512
G Carm1 coactivator-associated arginine methyltransferase 1 JBrowse link 8 22,577,723 22,622,555 RGD:5128512
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:5128512
G Ddx5 DEAD-box helicase 5 JBrowse link 10 94,979,759 94,988,461 RGD:5128512
G Dnaja2 DnaJ heat shock protein family (Hsp40) member A2 JBrowse link 19 22,569,999 22,588,143 RGD:4892102
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:5128512
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:1580338
RGD:5128669
RGD:4892064
G Esr2 estrogen receptor 2 JBrowse link 6 99,163,953 99,214,711 RGD:1582269
RGD:5128669
RGD:4892064
G Fkbp4 FKBP prolyl isomerase 4 JBrowse link 4 161,748,993 161,757,447 RGD:4892102
G Gper1 G protein-coupled estrogen receptor 1 JBrowse link 12 17,309,122 17,315,267 RGD:4892064
RGD:5128698
RGD:4892084
G Hsp90aa1 heat shock protein 90 alpha family class A member 1 JBrowse link 6 135,107,262 135,112,793 RGD:4892102
G Hsp90ab1 heat shock protein 90 alpha family class B member 1 JBrowse link 9 17,817,791 17,823,163 RGD:4892102
G Hspa4 heat shock protein family A (Hsp70) member 4 JBrowse link 10 38,601,624 38,642,397 RGD:4892102
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:5128512
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:5128512
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:5128512
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:5128512
G Ncoa6 nuclear receptor coactivator 6 JBrowse link 3 150,919,317 150,990,391 RGD:5128512
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:5128512
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:5128512
G Nrip1 nuclear receptor interacting protein 1 JBrowse link 11 14,658,225 14,742,478 RGD:5128512
G Phb2 prohibitin 2 JBrowse link 4 157,230,769 157,235,375 RGD:5128512
G Ppid peptidylprolyl isomerase D JBrowse link 2 178,354,830 178,366,843 RGD:4892102
G Prmt1 protein arginine methyltransferase 1 JBrowse link 1 100,971,132 100,980,411 RGD:5128512
G Ptges3 prostaglandin E synthase 3 JBrowse link 7 2,479,267 2,497,024 RGD:4892102
G Siah2 siah E3 ubiquitin protein ligase 2 JBrowse link 2 148,874,151 148,891,900 RGD:5128512
G Sra1 steroid receptor RNA activator 1 JBrowse link 18 29,494,004 29,497,232 RGD:5128512
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:5128669
RGD:4892084
G Stip1 stress-induced phosphoprotein 1 JBrowse link 1 222,274,133 222,293,139 RGD:4892102
forkhead class A signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcc8 ATP binding cassette subfamily C member 8 JBrowse link 1 102,110,708 102,191,287 RGD:6484113
G Acadm acyl-CoA dehydrogenase medium chain JBrowse link 2 260,124,418 260,148,589 RGD:6484113
G Acadvl acyl-CoA dehydrogenase, very long chain JBrowse link 10 56,619,321 56,624,468 RGD:6484113
G Afp alpha-fetoprotein JBrowse link 14 19,141,755 19,159,919 RGD:6484113
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:6484113
G Alas1 5'-aminolevulinate synthase 1 JBrowse link 8 114,927,704 114,941,038 RGD:6484113
G Alb albumin JBrowse link 14 19,176,275 19,191,793 RGD:6484113
G Aldob aldolase, fructose-bisphosphate B JBrowse link 5 64,805,772 64,818,813 RGD:6484113
G Ap1b1 adaptor related protein complex 1 subunit beta 1 JBrowse link 14 85,230,652 85,281,806 RGD:6484113
G Apoa1 apolipoprotein A1 JBrowse link 8 50,525,091 50,526,875 RGD:6484113
G Apob apolipoprotein B JBrowse link 6 33,176,826 33,216,381 RGD:6484113
G Ar androgen receptor JBrowse link X 67,656,253 67,828,998 RGD:6484113
G Atp5pf ATP synthase peripheral stalk subunit F6 JBrowse link 11 24,286,806 24,294,419 RGD:6484113
G Bdh1 3-hydroxybutyrate dehydrogenase 1 JBrowse link 11 72,577,547 72,619,435 RGD:6484113
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:6484113
G C4bpb complement component 4 binding protein, beta JBrowse link 13 47,387,173 47,398,115 RGD:6484113
G Cdkn1b cyclin-dependent kinase inhibitor 1B JBrowse link 4 168,689,043 168,694,159 RGD:6484113
G Cebpa CCAAT/enhancer binding protein alpha JBrowse link 1 91,363,492 91,366,164 RGD:6484113
G Cebpb CCAAT/enhancer binding protein beta JBrowse link 3 164,424,502 164,425,933 RGD:6484113
G Cebpd CCAAT/enhancer binding protein delta JBrowse link 11 89,008,008 89,009,146 RGD:6484113
G Col18a1 collagen type XVIII alpha 1 chain JBrowse link 20 12,225,202 12,332,858 RGD:6484113
G Cpt1a carnitine palmitoyltransferase 1A JBrowse link 1 218,568,157 218,629,679 RGD:6484113
G Cpt1b carnitine palmitoyltransferase 1B JBrowse link 7 130,395,211 130,404,731 RGD:6484113
G Cpt1c carnitine palmitoyltransferase 1c JBrowse link 1 100,955,094 100,970,579 RGD:6484113
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:6484113
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:6484113
G Dlk1 delta like non-canonical Notch ligand 1 JBrowse link 6 133,576,513 133,583,751 RGD:6484113
G Dscam DS cell adhesion molecule JBrowse link 11 37,004,776 37,599,866 RGD:6484113
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:6484113
G Esr1 estrogen receptor 1 JBrowse link 1 41,192,029 41,594,799 RGD:6484113
G F2 coagulation factor II JBrowse link 3 80,529,468 80,542,993 RGD:6484113
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:6484113
G Foxa1 forkhead box A1 JBrowse link 6 78,516,579 78,549,669 RGD:6484113
G Foxa2 forkhead box A2 JBrowse link 3 142,383,084 142,387,493 RGD:6484113
G Foxa3 forkhead box A3 JBrowse link 1 79,921,292 79,930,219 RGD:6484113
G G6pc glucose-6-phosphatase, catalytic subunit JBrowse link 10 89,286,009 89,296,213 RGD:6484113
G Gcg glucagon JBrowse link 3 48,442,635 48,451,650 RGD:6484113
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:6484113
G Hadh hydroxyacyl-CoA dehydrogenase JBrowse link 2 236,353,445 236,395,067 RGD:6484113
G Hmgcs1 3-hydroxy-3-methylglutaryl-CoA synthase 1 JBrowse link 2 52,427,351 52,445,082 RGD:6484113
G Hnf1a HNF1 homeobox A JBrowse link 12 47,407,811 47,433,342 RGD:6484113
G Hnf1b HNF1 homeobox B JBrowse link 10 71,159,863 71,218,902 RGD:6484113
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:6484113
G Igfbp1 insulin-like growth factor binding protein 1 JBrowse link 14 87,448,716 87,453,783 RGD:6484113
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:6484113
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:6484113
G Kcnj11 potassium inwardly-rectifying channel, subfamily J, member 11 JBrowse link 1 102,103,093 102,107,134 RGD:6484113
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:6484113
G Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 JBrowse link 20 10,265,826 10,275,298 RGD:6484113
G Nf1 neurofibromin 1 JBrowse link 10 66,732,460 66,928,706 RGD:6484113
G Nfia nuclear factor I/A JBrowse link 5 116,421,895 116,750,381 RGD:6484113
G Nfib nuclear factor I/B JBrowse link 5 100,436,343 100,647,962 RGD:6484113
G Nfic nuclear factor I/C JBrowse link 7 11,151,941 11,179,544 RGD:6484113
G Nkx2-1 NK2 homeobox 1 JBrowse link 6 77,418,096 77,423,383 RGD:6484113
G Nkx3-1 NK3 homeobox 1 JBrowse link 15 51,065,316 51,067,908 RGD:6484113
G Nr2f2 nuclear receptor subfamily 2, group F, member 2 JBrowse link 1 131,447,671 131,465,749 RGD:6484113
G Nr3c1 nuclear receptor subfamily 3, group C, member 1 JBrowse link 18 31,728,373 32,704,022 RGD:6484113
G Nrip1 nuclear receptor interacting protein 1 JBrowse link 11 14,658,225 14,742,478 RGD:6484113
G Pck1 phosphoenolpyruvate carboxykinase 1 JBrowse link 3 171,213,936 171,219,885 RGD:6484113
G Pdx1 pancreatic and duodenal homeobox 1 JBrowse link 12 9,496,044 9,501,211 RGD:6484113
G Pisd phosphatidylserine decarboxylase JBrowse link 14 83,298,630 83,347,697 RGD:6484113
G Pklr pyruvate kinase L/R JBrowse link 2 188,449,158 188,458,034 RGD:6484113
G Pou2f1 POU class 2 homeobox 1 JBrowse link 13 84,075,316 84,217,368 RGD:6484113
G Prdm15 PR/SET domain 15 JBrowse link 11 38,294,040 38,354,648 RGD:6484113
G Scgb1a1 secretoglobin family 1A member 1 JBrowse link 1 225,279,698 225,283,246 RGD:6484113
G Serpina1 serpin family A member 1 JBrowse link 6 127,610,241 127,632,265 RGD:6484113
G Sftpa1 surfactant protein A1 JBrowse link 16 18,716,019 18,719,404 RGD:6484113
G Sftpd surfactant protein D JBrowse link 16 18,753,535 18,766,100 RGD:6484113
G Shh sonic hedgehog signaling molecule JBrowse link 4 718,538 727,691 RGD:6484113
G Slc2a2 solute carrier family 2 member 2 JBrowse link 2 114,413,427 114,445,418 RGD:6484113
G Sod1 superoxide dismutase 1 JBrowse link 11 30,363,282 30,368,858 RGD:6484113
G Sp1 Sp1 transcription factor JBrowse link 7 144,014,173 144,044,635 RGD:6484113
G Tat tyrosine aminotransferase JBrowse link 19 41,675,639 41,686,195 RGD:6484113
G Tff1 trefoil factor 1 JBrowse link 20 9,892,124 9,895,984 RGD:6484113
G Tfrc transferrin receptor JBrowse link 11 71,397,423 71,419,263 RGD:6484113
G Ttr transthyretin JBrowse link 18 15,532,963 15,542,180 RGD:6484113
G Ucp2 uncoupling protein 2 JBrowse link 1 165,506,375 165,512,744 RGD:6484113
G Vtn vitronectin JBrowse link 10 65,767,960 65,771,040 RGD:6484113
G Xbp1 X-box binding protein 1 JBrowse link 14 85,753,736 85,758,820 RGD:6484113
histone modification pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aebp2 AE binding protein 2 JBrowse link 4 174,799,378 174,863,260 RGD:9479059
G Aplf aprataxin and PNKP like factor JBrowse link 4 119,514,822 119,568,764 RGD:9068945
G Asf1a anti-silencing function 1A histone chaperone JBrowse link 20 34,894,419 34,909,265 RGD:9068945
G Asf1b anti-silencing function 1B histone chaperone JBrowse link 19 25,077,918 25,092,491 RGD:9068945
G Ash1l ASH1 like histone lysine methyltransferase JBrowse link 2 188,252,592 188,389,251 RGD:7242632
G Ash2l ASH2 like histone lysine methyltransferase complex subunit JBrowse link 16 71,011,315 71,033,171 RGD:9479053
G Bap1 Brca1 associated protein 1 JBrowse link 16 7,336,685 7,345,511 RGD:9479061
G Birc5 baculoviral IAP repeat-containing 5 JBrowse link 10 106,856,097 106,864,419 RGD:9479074
G Bmi1 BMI1 proto-oncogene, polycomb ring finger JBrowse link 17 85,360,439 85,370,283 RGD:9479058
RGD:9479060
G Bptf bromodomain PHD finger transcription factor JBrowse link 10 95,248,573 95,350,162 RGD:9479075
RGD:9479074
G Brcc3 BRCA1/BRCA2-containing complex, subunit 3 JBrowse link 9 9,863,380 9,865,920 RGD:9479061
G Brd1 bromodomain containing 1 JBrowse link 7 129,676,119 129,724,303 RGD:9479075
G Brd2 bromodomain containing 2 JBrowse link 20 3,910,555 3,921,074 RGD:9479075
G Brd3 bromodomain containing 3 JBrowse link 3 5,995,204 6,054,467 RGD:9479075
G Brd4 bromodomain containing 4 JBrowse link 7 14,222,101 14,303,055 RGD:9479075
G Brd7 bromodomain containing 7 JBrowse link 19 19,672,780 19,701,484 RGD:9479075
G Brdt bromodomain testis associated JBrowse link 14 3,437,876 3,462,613 RGD:9479075
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit JBrowse link 6 137,762,230 137,808,573 RGD:9479074
G Carm1 coactivator-associated arginine methyltransferase 1 JBrowse link 8 22,577,723 22,622,555 RGD:9479047
G Cbx2 chromobox 2 JBrowse link 10 108,132,105 108,140,935 RGD:9479058
RGD:9479060
G Cbx4 chromobox 4 JBrowse link 10 108,190,947 108,196,455 RGD:9479058
RGD:9479060
G Cbx5 chromobox 5 JBrowse link 7 144,819,673 144,865,014 RGD:9479074
G Cbx6 chromobox 6 JBrowse link 7 121,047,996 121,058,109 RGD:9479058
RGD:9479060
G Cbx7 chromobox 7 JBrowse link 7 121,136,067 121,153,503 RGD:9479058
RGD:9479060
G Cbx8 chromobox 8 JBrowse link 10 108,148,073 108,150,511 RGD:9479058
RGD:9479060
G Chaf1a chromatin assembly factor 1 subunit A JBrowse link 9 11,000,869 11,027,631 RGD:9068945
G Chaf1b chromatin assembly factor 1 subunit B JBrowse link 11 34,101,248 34,121,371 RGD:9068945
G Chd1 chromodomain helicase DNA binding protein 1 JBrowse link 1 57,692,828 57,756,762 RGD:9479074
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:9104959
RGD:9479075
G Cxxc1 CXXC finger protein 1 JBrowse link 18 70,192,520 70,197,871 RGD:9479053
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:9068945
G Dot1l DOT1 like histone lysine methyltransferase JBrowse link 7 11,786,105 11,824,742 RGD:7242632
G Dpf3 double PHD fingers 3 JBrowse link 6 106,660,569 106,971,310 RGD:9479074
G Dpy30 dpy-30 histone methyltransferase complex regulatory subunit JBrowse link 6 22,296,128 22,316,894 RGD:9479053
G Eed embryonic ectoderm development JBrowse link 1 154,189,252 154,216,340 RGD:9479058
RGD:9479059
G Ehmt1 euchromatic histone lysine methyltransferase 1 JBrowse link 3 1,966,974 2,123,858 RGD:7242632
G Ehmt2 euchromatic histone lysine methyltransferase 2 JBrowse link 20 4,576,033 4,592,980 RGD:7242632
RGD:9479074
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:9104959
G Ezh1 enhancer of zeste 1 polycomb repressive complex 2 subunit JBrowse link 10 89,104,026 89,139,978 RGD:9479058
RGD:9479059
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit JBrowse link 4 77,284,404 77,347,011 RGD:7242632
RGD:9479059
RGD:9479058
G H2ax H2A.X variant histone JBrowse link 8 48,665,652 48,666,981 RGD:9075965
G H2az1 H2A.Z variant histone 1 JBrowse link 2 243,105,224 243,107,333 RGD:9074213
G H3f3a H3 histone family member 3A JBrowse link 13 99,091,246 99,102,828 RGD:9075965
G H3f3b H3 histone family member 3B JBrowse link 10 104,573,666 104,575,890 RGD:9075965
G Hat1 histone acetyltransferase 1 JBrowse link 3 58,022,395 58,070,067 RGD:9104959
G Hcfc1 host cell factor C1 JBrowse link X 156,812,012 156,837,227 RGD:9479053
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:9104959
G Hdac10 histone deacetylase 10 JBrowse link 7 130,102,335 130,109,036 RGD:9104959
G Hdac11 histone deacetylase 11 JBrowse link 4 122,781,095 122,798,355 RGD:9104959
G Hdac2 histone deacetylase 2 JBrowse link 20 43,084,870 43,108,198 RGD:9104959
G Hdac3 histone deacetylase 3 JBrowse link 18 31,073,057 31,094,347 RGD:9104959
G Hdac4 histone deacetylase 4 JBrowse link 9 99,052,945 99,299,715 RGD:9104959
G Hdac5 histone deacetylase 5 JBrowse link 10 90,140,183 90,169,853 RGD:9104959
G Hdac6 histone deacetylase 6 JBrowse link X 15,295,372 15,316,673 RGD:9104959
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:9104959
G Hdac9 histone deacetylase 9 JBrowse link 6 53,487,367 54,358,694 RGD:9104959
G Hira histone cell cycle regulator JBrowse link 11 86,168,196 86,276,430 RGD:9068945
G Hjurp Holliday junction recognition protein JBrowse link 9 95,347,739 95,362,228 RGD:9068945
G Ing2 inhibitor of growth family, member 2 JBrowse link 16 47,714,756 47,725,836 RGD:9479074
G Jarid2 jumonji and AT-rich interaction domain containing 2 JBrowse link 17 20,183,440 20,365,219 RGD:9479058
RGD:9479059
G Jmjd1c jumonji domain containing 1C JBrowse link 20 22,751,743 22,914,080 RGD:7242632
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:9104959
RGD:9479074
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:9104959
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:9104959
G Kat6a lysine acetyltransferase 6A JBrowse link 16 73,942,669 74,020,750 RGD:9104959
G Kat6b lysine acetyltransferase 6B JBrowse link 15 2,811,933 2,966,833 RGD:9104959
G Kat7 lysine acetyltransferase 7 JBrowse link 10 83,095,067 83,128,342 RGD:9104959
G Kat8 lysine acetyltransferase 8 JBrowse link 1 199,360,645 199,372,925 RGD:9104959
G Kdm1a lysine demethylase 1A JBrowse link 5 154,909,003 154,965,171 RGD:7242632
G Kdm1b lysine demethylase 1B JBrowse link 17 17,987,972 18,028,808 RGD:7242632
G Kdm2a lysine demethylase 2A JBrowse link 1 219,566,130 219,642,294 RGD:7242632
G Kdm2b lysine demethylase 2B JBrowse link 12 39,021,924 39,161,954 RGD:7242632
G Kdm3a lysine demethylase 3A JBrowse link 4 99,503,160 99,547,315 RGD:7242632
G Kdm3b lysine demethylase 3B JBrowse link 18 27,593,823 27,631,129 RGD:7242632
G Kdm4a lysine demethylase 4A JBrowse link 5 136,967,650 137,014,402 RGD:7242632
RGD:9479074
RGD:9479148
G Kdm4b lysine demethylase 4B JBrowse link 9 10,656,035 10,734,127 RGD:7242632
G Kdm4c lysine demethylase 4C JBrowse link 5 90,800,139 91,012,662 RGD:7242632
G Kdm4e lysine demethylase 4E JBrowse link 8 12,968,192 12,994,050 RGD:7242632
G Kdm5a lysine demethylase 5A JBrowse link 4 152,892,388 152,972,196 RGD:7242632
G Kdm5b lysine demethylase 5B JBrowse link 13 51,384,371 51,455,392 RGD:7242632
G Kdm5c lysine demethylase 5C JBrowse link X 22,302,664 22,349,298 RGD:7242632
G Kdm6b lysine demethylase 6B JBrowse link 10 56,000,494 56,009,582 RGD:7242632
G Kdm7a lysine demethylase 7A JBrowse link 4 66,915,603 66,957,971 RGD:7242632
G Kdm8 lysine demethylase 8 JBrowse link 1 196,838,460 196,854,192 RGD:7242632
G Kmt2a lysine methyltransferase 2A JBrowse link 8 49,110,407 49,185,872 RGD:7242632
RGD:9479053
G Kmt2b lysine methyltransferase 2B JBrowse link 1 89,022,889 89,042,176 RGD:7242632
G Kmt2c lysine methyltransferase 2C JBrowse link 4
4
82,506
6,083,650
109,986
6,294,413
RGD:7242632
RGD:9479053
G Kmt2d lysine methyltransferase 2D JBrowse link 7 140,507,137 140,542,479 RGD:7242632
RGD:9479053
G Kmt2e lysine methyltransferase 2E JBrowse link 4 8,187,751 8,255,578 RGD:7242632
G Kmt5b lysine methyltransferase 5B JBrowse link 1 219,000,844 219,050,211 RGD:7242632
G Kmt5c lysine methyltransferase 5C JBrowse link 1 72,666,662 72,674,271 RGD:7242632
G L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 JBrowse link 3 159,316,580 159,348,914 RGD:9479074
G Lbr lamin B receptor JBrowse link 13 100,431,390 100,450,209 RGD:9479148
G LOC100909949 N-lysine methyltransferase SETD8-like JBrowse link 2 148,262,128 148,264,689 RGD:7242632
G LOC100911180 histone-lysine N-methyltransferase SETDB1-like RGD:7242632
G LOC100911617 protein arginine N-methyltransferase 6-like JBrowse link 2 213,173,403 213,180,727 RGD:9479047
G Macroh2a1 macroH2A.1 histone JBrowse link 17 9,282,109 9,344,698 RGD:9074213
G Macroh2a2 macroH2A.2 histone JBrowse link 20 31,352,924 31,402,483 RGD:9074213
G Mcph1 microcephalin 1 JBrowse link 16 75,904,087 76,110,624 RGD:9479074
G Mdc1 mediator of DNA damage checkpoint 1 JBrowse link 20 3,405,017 3,419,831 RGD:9479074
G Men1 menin 1 JBrowse link 1 221,704,394 221,710,343 RGD:9479053
G Mtf2 metal response element binding transcription factor 2 JBrowse link 14 2,656,776 2,701,027 RGD:9479058
RGD:9479059
G Mysm1 myb-like, SWIRM and MPN domains 1 JBrowse link 5 113,902,115 113,939,083 RGD:9479061
G Nap1l1 nucleosome assembly protein 1-like 1 JBrowse link 7 54,213,305 54,237,880 RGD:9068945
G Nasp nuclear autoantigenic sperm protein JBrowse link 5 135,446,485 135,472,113 RGD:9068945
G Ncoa6 nuclear receptor coactivator 6 JBrowse link 3 150,919,317 150,990,391 RGD:9479053
G Nsd1 nuclear receptor binding SET domain protein 1 JBrowse link 17 9,840,859 9,955,391 RGD:7242632
G Nsd3 nuclear receptor binding SET domain protein 3 JBrowse link 16 71,126,276 71,237,118 RGD:7242632
G Orc1 origin recognition complex, subunit 1 JBrowse link 5 128,186,651 128,212,901 RGD:9479074
G Pagr1 Paxip1-associated glutamate-rich protein 1 JBrowse link 1 198,448,790 198,451,078 RGD:9479053
G Paxip1 PAX interacting protein 1 JBrowse link 4 3,956,931 4,008,326 RGD:9479053
G Pbrm1 polybromo 1 JBrowse link 16 7,103,714 7,202,899 RGD:9479075
G Pcgf1 polycomb group ring finger 1 JBrowse link 4 113,911,129 113,913,718 RGD:9479058
RGD:9479060
G Pcgf3 polycomb group ring finger 3 JBrowse link 14 2,247,805 2,297,155 RGD:9479058
RGD:9479060
G Pcgf5 polycomb group ring finger 5 JBrowse link 1 254,974,688 255,090,925 RGD:9479058
RGD:9479060
G Pcgf6 polycomb group ring finger 6 JBrowse link 1 266,811,418 266,831,022 RGD:9479058
RGD:9479060
G Phc1 polyhomeotic homolog 1 JBrowse link 4 155,093,947 155,118,838 RGD:9479058
RGD:9479060
G Phc2 polyhomeotic homolog 2 JBrowse link 5 146,832,552 146,931,444 RGD:9479058
RGD:9479060
G Phc3 polyhomeotic homolog 3 JBrowse link 2 116,028,735 116,103,227 RGD:9479058
RGD:9479060
G Phf1 PHD finger protein 1 JBrowse link 20 5,526,926 5,531,940 RGD:9479058
RGD:9479074
RGD:9479148
RGD:9479059
G Phf19 PHD finger protein 19 JBrowse link 3 13,957,136 13,978,283 RGD:9479058
RGD:9479074
RGD:9479148
RGD:9479059
G Phf2 PHD finger protein 2 JBrowse link 17 16,240,458 16,274,626 RGD:7242632
G Phf8 PHD finger protein 8 JBrowse link X 21,063,487 21,168,750 RGD:7242632
G Prdm16 PR/SET domain 16 JBrowse link 5 171,662,277 171,711,561 RGD:7242632
G Prdm2 PR/SET domain 2 JBrowse link 5 161,769,587 161,879,150 RGD:7242632
G Prdm6 PR/SET domain 6 JBrowse link 18 48,433,747 48,538,834 RGD:7242632
G Prdm8 PR/SET domain 8 JBrowse link 14 13,052,776 13,073,583 RGD:7242632
G Prdm9 PR/SET domain 9 JBrowse link 1 57,533,602 57,555,155 RGD:7242632
G Prmt1 protein arginine methyltransferase 1 JBrowse link 1 100,971,132 100,980,411 RGD:9479047
G Prmt2 protein arginine methyltransferase 2 JBrowse link 20 13,154,513 13,212,613 RGD:9479047
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:9479047
G Prmt7 protein arginine methyltransferase 7 JBrowse link 19 38,189,605 38,237,155 RGD:9479047
G Rag2 recombination activating 2 JBrowse link 3 91,191,837 91,200,134 RGD:9479074
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:9479058
RGD:9479059
G Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit JBrowse link 13 49,250,301 49,277,152 RGD:9479053
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:9479058
RGD:9479059
G Ring1 ring finger protein 1 JBrowse link 20 3,812,287 3,815,834 RGD:9479058
RGD:9479060
G Rnf2 ring finger protein 2 JBrowse link 13 68,829,714 68,859,920 RGD:9479058
RGD:9479060
G Setd2 SET domain containing 2, histone lysine methyltransferase JBrowse link 8 118,802,478 118,888,224 RGD:7242632
G Setd7 SET domain containing 7, histone lysine methyltransferase JBrowse link 2 140,576,188 140,618,405 RGD:7242632
G Sgf29 SAGA complex associated factor 29 JBrowse link 1 198,066,974 198,100,494 RGD:9479148
RGD:9479074
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:9104959
G Sirt2 sirtuin 2 JBrowse link 1 86,948,866 86,971,954 RGD:9104959
G Sirt3 sirtuin 3 JBrowse link 1 213,613,502 213,636,061 RGD:9104959
G Sirt4 sirtuin 4 JBrowse link 12 46,862,358 46,876,593 RGD:9104959
G Sirt5 sirtuin 5 JBrowse link 17 23,986,710 24,013,854 RGD:9104959
G Sirt6 sirtuin 6 JBrowse link 7 10,937,622 10,943,048 RGD:9104959
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:9104959
G Smarca2 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 JBrowse link 1 244,615,811 244,783,736 RGD:9479075
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 JBrowse link 8 22,648,323 22,739,468 RGD:9479075
G Smyd1 SET and MYND domain containing 1 JBrowse link 4 99,071,122 99,125,143 RGD:7242632
G Smyd2 SET and MYND domain containing 2 JBrowse link 13 108,642,156 108,686,293 RGD:7242632
G Smyd3 SET and MYND domain containing 3 JBrowse link 13 97,330,120 97,807,813 RGD:7242632
G Spin1 spindlin 1 JBrowse link 16 884,854 930,527 RGD:9479148
G Ssrp1 structure specific recognition protein 1 JBrowse link 3 72,447,516 72,457,621 RGD:9068945
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 15 28,574,841 28,611,959 RGD:9068945
G Suv39h1 suppressor of variegation 3-9 homolog 1 JBrowse link X 146,532,002 146,533,538 RGD:7242632
G Suv39h2 suppressor of variegation 3-9 homolog 2 JBrowse link 17 78,762,897 78,782,016 RGD:7242632
G Suz12 SUZ12 polycomb repressive complex 2 subunit JBrowse link 10 67,325,101 67,371,588 RGD:9479058
RGD:9479059
G Taf1 TATA-box binding protein associated factor 1 JBrowse link X 71,412,291 71,486,456 RGD:9479074
RGD:9479075
G Tdrd3 tudor domain containing 3 JBrowse link 15 70,732,164 70,864,855 RGD:9479148
RGD:9479163
G Tp53bp1 tumor protein p53 binding protein 1 JBrowse link 3 113,160,030 113,259,701 RGD:9479148
RGD:9479074
G Trim24 tripartite motif-containing 24 JBrowse link 4 65,632,278 65,684,746 RGD:9479074
G Trim33 tripartite motif-containing 33 JBrowse link 2 205,783,252 205,863,426 RGD:9479074
RGD:9479075
G Uhrf1 ubiquitin-like with PHD and ring finger domains 1 JBrowse link 9 10,738,211 10,758,403 RGD:9479148
RGD:9479074
G Usp12 ubiquitin specific peptidase 12 JBrowse link 12 10,037,686 10,087,685 RGD:9479061
G Usp16 ubiquitin specific peptidase 16 JBrowse link 11 27,101,213 27,130,345 RGD:9479061
G Usp21 ubiquitin specific peptidase 21 JBrowse link 13 89,655,016 89,661,150 RGD:9479061
G Usp22 ubiquitin specific peptidase 22 JBrowse link 10 47,429,201 47,453,298 RGD:9479061
G Usp3 ubiquitin specific peptidase 3 JBrowse link 8 72,207,970 72,284,871 RGD:9479061
G Usp44 ubiquitin specific peptidase 44 JBrowse link 7 34,714,293 34,759,352 RGD:9479061
G Uty ubiquitously transcribed tetratricopeptide repeat containing, Y-linked JBrowse link Y 1,065,274 1,206,127 RGD:9479053
RGD:7242632
G Wdr5 WD repeat domain 5 JBrowse link 3 6,061,892 6,080,724 RGD:9479053
RGD:9479074
G Wdr82 WD repeat domain 82 JBrowse link 8 114,866,769 114,886,208 RGD:9479053
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta JBrowse link 7 75,573,553 75,598,295 RGD:9479074
hypoxia inducible factor pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcb1a ATP binding cassette subfamily B member 1A JBrowse link 4 22,339,829 22,517,642 RGD:6484113
G Abcg2 ATP binding cassette subfamily G member 2 JBrowse link 4 88,765,441 88,890,268 RGD:6484113
G Adm adrenomedullin JBrowse link 1 175,443,189 175,447,260 RGD:6484113
G Adora2a adenosine A2a receptor JBrowse link 20 14,265,251 14,282,873 RGD:6484113
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:6484113
G Aldoa aldolase, fructose-bisphosphate A JBrowse link 1 198,228,387 198,233,988 RGD:6484113
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 JBrowse link 15 27,849,943 27,852,083 RGD:6484113
G Arnt aryl hydrocarbon receptor nuclear translocator JBrowse link 2 196,594,178 196,651,486 RGD:6483352
RGD:6484113
G Arnt2 aryl hydrocarbon receptor nuclear translocator 2 JBrowse link 1 146,399,217 146,556,437 RGD:6483352
G Bhlhe40 basic helix-loop-helix family, member e40 JBrowse link 4 140,703,619 140,709,319 RGD:6484113
G Bhlhe41 basic helix-loop-helix family, member e41 JBrowse link 4 180,230,742 180,235,138 RGD:6484113
G Bnip3 BCL2 interacting protein 3 JBrowse link 1 211,248,098 211,265,282 RGD:6484113
G Ca9 carbonic anhydrase 9 JBrowse link 5 59,008,277 59,015,535 RGD:6484113
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 JBrowse link 1 12,823,363 12,825,806 RGD:6484113
G Cops5 COP9 signalosome subunit 5 JBrowse link 5 8,876,090 8,894,345 RGD:6484113
G Cp ceruloplasmin JBrowse link 2 104,744,249 104,803,034 RGD:6484113
G Creb1 cAMP responsive element binding protein 1 JBrowse link 9 71,229,753 71,298,994 RGD:6484113
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:6483358
RGD:6484113
RGD:6483503
G Cul2 cullin 2 JBrowse link 17 56,952,480 56,992,716 RGD:6483358
G Cxcl12 C-X-C motif chemokine ligand 12 JBrowse link 4 149,261,044 149,273,891 RGD:6484113
G Cxcr4 C-X-C motif chemokine receptor 4 JBrowse link 13 45,314,952 45,318,856 RGD:6484113
G Edn1 endothelin 1 JBrowse link 17 22,136,814 22,143,745 RGD:6484113
G Efna1 ephrin A1 JBrowse link 2 188,588,808 188,596,156 RGD:6484113
G Egln1 egl-9 family hypoxia-inducible factor 1 JBrowse link 19 57,660,194 57,701,158 RGD:727754
RGD:6484113
RGD:6483503
RGD:6483358
RGD:1334466
G Egln2 egl-9 family hypoxia-inducible factor 2 JBrowse link 1 83,969,456 83,977,665 RGD:6483503
RGD:6484113
G Egln3 egl-9 family hypoxia-inducible factor 3 JBrowse link 6 75,050,329 75,075,795 RGD:6483503
RGD:6484113
G Eif3el1 eukaryotic translation initiation factor 3, subunit E-like 1 JBrowse link 13 100,129,757 100,162,596 RGD:6484113
G Elk1 ETS transcription factor ELK1 JBrowse link X 1,287,875 1,304,822 RGD:6484113
G Elob elongin B JBrowse link 10 13,163,032 13,168,217 RGD:6483358
RGD:6484113
G Eloc elongin C JBrowse link 5 2,042,991 2,059,357 RGD:6483358
RGD:6484113
G Eng endoglin JBrowse link 3 11,679,530 11,717,486 RGD:6484113
G Eno1 enolase 1 JBrowse link 5 167,288,223 167,299,610 RGD:6484113
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:6483358
RGD:6484113
RGD:6483503
G Epas1 endothelial PAS domain protein 1 JBrowse link 6 10,306,508 10,385,239 RGD:6483352
RGD:6484113
RGD:6483503
G Epo erythropoietin JBrowse link 12 22,274,828 22,278,268 RGD:6484113
G Ets1 ETS proto-oncogene 1, transcription factor JBrowse link 8 33,756,634 33,879,625 RGD:6484113
G Fech ferrochelatase JBrowse link 18 59,941,992 59,975,192 RGD:6484113
G Flt1 Fms related receptor tyrosine kinase 1 JBrowse link 12 9,033,993 9,205,886 RGD:6484113
G Fos Fos proto-oncogene, AP-1 transcription factor subunit JBrowse link 6 109,300,433 109,303,299 RGD:6484113
G Furin furin (paired basic amino acid cleaving enzyme) JBrowse link 1 142,185,092 142,198,167 RGD:6484113
G Fxn frataxin JBrowse link 1 242,123,975 242,152,834 RGD:6484113
G Gata2 GATA binding protein 2 JBrowse link 4 120,129,028 120,142,490 RGD:6484113
G Gck glucokinase JBrowse link 14 86,149,146 86,191,589 RGD:6484113
G Hdac7 histone deacetylase 7 JBrowse link 7 139,280,396 139,319,108 RGD:6484113
G Hif1a hypoxia inducible factor 1 subunit alpha JBrowse link 6 96,810,868 96,856,303 RGD:628389
RGD:6484113
RGD:6483503
RGD:6483352
RGD:2301848
RGD:1580561
G Hif1an hypoxia inducible factor 1 subunit alpha inhibitor JBrowse link 1 264,309,214 264,319,269 RGD:1334466
RGD:6484113
RGD:6483358
RGD:6483352
G Hif3a hypoxia inducible factor 3 subunit alpha JBrowse link 1 78,976,318 78,997,869 RGD:68201
RGD:6483352
G Hk1 hexokinase 1 JBrowse link 20 31,911,460 31,979,780 RGD:6484113
G Hk2 hexokinase 2 JBrowse link 4 113,559,396 113,609,897 RGD:6484113
G Hmox1 heme oxygenase 1 JBrowse link 19 14,508,634 14,515,455 RGD:6484113
G Hnf4a hepatocyte nuclear factor 4, alpha JBrowse link 3 159,902,441 159,965,003 RGD:6484113
G Id2 inhibitor of DNA binding 2 JBrowse link 6 44,360,077 44,361,908 RGD:6484113
G Igfbp1 insulin-like growth factor binding protein 1 JBrowse link 14 87,448,716 87,453,783 RGD:6484113
G Itgb2 integrin subunit beta 2 JBrowse link 20 11,777,773 11,815,647 RGD:6484113
G Jun Jun proto-oncogene, AP-1 transcription factor subunit JBrowse link 5 114,011,184 114,014,277 RGD:6484113
G Kdr kinase insert domain receptor JBrowse link 14 34,727,677 34,787,127 RGD:6484113
G Ldha lactate dehydrogenase A JBrowse link 1 102,900,288 102,909,713 RGD:6484113
G Lep leptin JBrowse link 4 56,337,695 56,351,818 RGD:6484113
G Mcl1 MCL1 apoptosis regulator, BCL2 family member JBrowse link 2 197,786,212 197,788,992 RGD:6484113
G Mmp14 matrix metallopeptidase 14 JBrowse link 15 33,074,441 33,083,666 RGD:6484113
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:6484113
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:6484113
G Ndrg1 N-myc downstream regulated 1 JBrowse link 7 107,734,326 107,775,701 RGD:6484113
G Nos2 nitric oxide synthase 2 JBrowse link 10 66,188,290 66,221,621 RGD:6484113
G Npm1 nucleophosmin 1 JBrowse link 10 18,080,949 18,091,062 RGD:6484113
G Nt5e 5' nucleotidase, ecto JBrowse link 8 95,969,002 96,012,733 RGD:6484113
G Os9 OS9, endoplasmic reticulum lectin JBrowse link 7 70,378,625 70,407,135 RGD:6483358
G Pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 JBrowse link 17 70,632,778 70,713,736 RGD:6484113
G Pfkl phosphofructokinase, liver type JBrowse link 20 11,393,860 11,415,889 RGD:6484113
G Pgk1 phosphoglycerate kinase 1 JBrowse link X 77,263,399 77,279,373 RGD:6484113
G Pgm1 phosphoglucomutase 1 JBrowse link 5 118,743,632 118,803,055 RGD:6484113
G Pkm pyruvate kinase M1/2 JBrowse link 8 64,480,963 64,502,957 RGD:6484113
G Plin2 perilipin 2 JBrowse link 5 104,984,413 105,010,863 RGD:6484113
G Pou5f1 POU class 5 homeobox 1 JBrowse link 20 3,747,231 3,751,994 RGD:6484113
G Rack1 receptor for activated C kinase 1 JBrowse link 10 34,149,717 34,155,198 RGD:6483358
G Rbx1 ring-box 1 JBrowse link 7 122,700,849 122,710,907 RGD:6483358
G Sat1 spermidine/spermine N1-acetyl transferase 1 JBrowse link X 43,626,480 43,629,767 RGD:6483358
G Sat2 spermidine/spermine N1-acetyltransferase family member 2 JBrowse link 10 56,227,703 56,229,796 RGD:6483358
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:6484113
G Slc11a2 solute carrier family 11 member 2 JBrowse link 7 142,025,812 142,062,892 RGD:6484113
G Slc2a1 solute carrier family 2 member 1 JBrowse link 5 138,154,677 138,182,897 RGD:6484113
G Smad3 SMAD family member 3 JBrowse link 8 68,569,530 68,678,349 RGD:6484113
G Smad4 SMAD family member 4 JBrowse link 18 69,626,682 69,657,373 RGD:6484113
G Sp1 Sp1 transcription factor JBrowse link 7 144,014,173 144,044,635 RGD:6484113
G Tert telomerase reverse transcriptase JBrowse link 1 32,250,876 32,275,330 RGD:6484113
G Tf transferrin JBrowse link 8 111,694,570 111,721,275 RGD:6484113
G Tff3 trefoil factor 3 JBrowse link 20 9,850,800 9,855,481 RGD:6484113
G Tfrc transferrin receptor JBrowse link 11 71,397,423 71,419,263 RGD:6484113
G Twist1 twist family bHLH transcription factor 1 JBrowse link 6 53,401,241 53,403,235 RGD:6484113
G Vegfa vascular endothelial growth factor A JBrowse link 9 17,340,341 17,355,681 RGD:6484113
G Vhl von Hippel-Lindau tumor suppressor JBrowse link 4 145,580,869 145,587,835 RGD:1358257
RGD:6484113
RGD:6483358
RGD:1580561
INO80 family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Actb actin, beta JBrowse link 12 13,715,843 13,718,813 RGD:9495926
G Actl6a actin-like 6A JBrowse link 2 119,112,776 119,128,870 RGD:9495926
G Actr5 actin related protein 5 JBrowse link 3 155,118,567 155,132,073 RGD:9495926
G Actr6 actin related protein 6 JBrowse link 7 30,377,369 30,397,922 RGD:9495926
G Actr8 actin related protein 8 JBrowse link 16 6,047,977 6,062,586 RGD:9495926
G Brd8 bromodomain containing 8 JBrowse link 18 27,375,645 27,423,989 RGD:9495926
G Dmap1 DNA methyltransferase 1-associated protein 1 JBrowse link 5 136,533,791 136,541,795 RGD:9495926
G Ep400 E1A binding protein p400 JBrowse link 12 51,948,650 52,055,274 RGD:9495926
G Epc1 enhancer of polycomb homolog 1 JBrowse link 17 57,303,968 57,394,975 RGD:9495926
G Epc2 enhancer of polycomb homolog 2 JBrowse link 3 33,641,616 33,741,219 RGD:9495926
G Ing3 inhibitor of growth family, member 3 JBrowse link 4 49,017,235 49,044,450 RGD:9495926
G Ino80 INO80 complex ATPase subunit JBrowse link 3 111,186,371 111,266,542 RGD:9495926
G Ino80b INO80 complex subunit B JBrowse link 4 113,954,612 113,957,774 RGD:9495926
G Ino80c INO80 complex subunit C JBrowse link 18 15,995,005 16,009,639 RGD:9495926
G Ino80d INO80 complex subunit D JBrowse link 9 69,820,520 69,887,475 RGD:9495926
G Ino80e INO80 complex subunit E JBrowse link 1 198,287,489 198,298,076 RGD:9495926
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:9495926
G Mcrs1 microspherule protein 1 JBrowse link 7 140,910,420 140,919,234 RGD:9495926
G Meaf6 MYST/Esa1-associated factor 6 JBrowse link 5 143,081,298 143,103,225 RGD:9495926
G Morf4l2 mortality factor 4 like 2 JBrowse link X 107,394,468 107,405,564 RGD:9495926
G Nfrkb nuclear factor related to kappa B binding protein JBrowse link 8 32,530,412 32,561,955 RGD:9495926
G Ruvbl1 RuvB-like AAA ATPase 1 JBrowse link 4 120,411,917 120,447,458 RGD:9495926
G Ruvbl2 RuvB-like AAA ATPase 2 JBrowse link 1 101,413,766 101,426,970 RGD:9495926
G Srcap Snf2-related CREBBP activator protein JBrowse link 1 198,957,764 199,007,576 RGD:9495926
G Tfpt TCF3 fusion partner JBrowse link 1 64,162,525 64,172,307 RGD:9495926
G Trrap transformation/transcription domain-associated protein JBrowse link 12 11,537,950 11,627,563 RGD:9495926
G Uchl5 ubiquitin C-terminal hydrolase L5 JBrowse link 13 60,568,102 60,603,812 RGD:9495926
G Vps72 vacuolar protein sorting 72 homolog JBrowse link 2 196,277,961 196,289,549 RGD:9495926
G Yeats4 YEATS domain containing 4 JBrowse link 7 60,287,477 60,294,618 RGD:9495926
G Yy1 YY1 transcription factor JBrowse link 6 132,702,443 132,726,848 RGD:9495926
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:9495926
ISWI family mediated chromatin remodeling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Baz1a bromodomain adjacent to zinc finger domain, 1A JBrowse link 6 75,793,223 75,873,854 RGD:9495920
G Baz1b bromodomain adjacent to zinc finger domain, 1B JBrowse link 12 24,478,882 24,536,851 RGD:9495920
G Bptf bromodomain PHD finger transcription factor JBrowse link 10 95,248,573 95,350,162 RGD:9495920
G Chrac1 chromatin accessibility complex subunit 1 JBrowse link 7 114,323,542 114,326,930 RGD:9495920
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:9495920
G Rbbp4 RB binding protein 4, chromatin remodeling factor JBrowse link 5 147,499,880 147,535,240 RGD:9495920
G Rbbp7 RB binding protein 7, chromatin remodeling factor JBrowse link X 33,648,682 33,665,821 RGD:9495920
G Smarca1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1 JBrowse link X 134,634,651 134,719,503 RGD:9495920
G Smarca5 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 JBrowse link 19 30,936,703 30,969,454 RGD:9495920
nuclear factor kappa B signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Arrb2 arrestin, beta 2 JBrowse link 10 57,040,252 57,048,045 RGD:6484113
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:6484113
G Bcl10 BCL10, immune signaling adaptor JBrowse link 2 251,805,392 251,814,957 RGD:6484113
G Bcl3 BCL3, transcription coactivator JBrowse link 1 80,730,758 80,745,273 RGD:6484113
G Birc2 baculoviral IAP repeat-containing 2 JBrowse link 8 6,014,014 6,036,668 RGD:6484113
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase JBrowse link 1 265,100,094 265,270,263 RGD:5490225
G Chuk component of inhibitor of nuclear factor kappa B kinase complex JBrowse link 1 263,848,829 263,884,354 RGD:2292172
RGD:6484113
G Csnk2a1 casein kinase 2 alpha 1 JBrowse link 3 147,713,808 147,760,375 RGD:6484113
G Csnk2a2 casein kinase 2 alpha 2 JBrowse link 19 9,972,537 10,012,043 RGD:6484113
G Csnk2b casein kinase 2 beta JBrowse link 20 5,108,692 5,113,675 RGD:6484113
G Cul1 cullin 1 JBrowse link 4 77,211,814 77,283,369 RGD:5490225
G Cyld CYLD lysine 63 deubiquitinase JBrowse link 19 19,264,984 19,323,817 RGD:6484113
RGD:7800735
RGD:7800734
G Erc1 ELKS/RAB6-interacting/CAST family member 1 JBrowse link 4 152,087,393 152,380,023 RGD:6484113
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta JBrowse link 16 74,177,233 74,230,809 RGD:2292172
RGD:6484113
G Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma JBrowse link X 156,254,187 156,280,046 RGD:2292172
RGD:6484113
G Irf1 interferon regulatory factor 1 JBrowse link 10 39,109,530 39,116,532 RGD:5128786
G Lck LCK proto-oncogene, Src family tyrosine kinase JBrowse link 5 147,750,976 147,779,627 RGD:6484113
G Malt1 MALT1 paracaspase JBrowse link 18 61,108,712 61,162,446 RGD:6484113
G Map3k14 mitogen-activated protein kinase kinase kinase 14 JBrowse link 10 91,303,428 91,353,601 RGD:2292172
RGD:6484113
G Map3k7 mitogen activated protein kinase kinase kinase 7 JBrowse link 5 47,183,142 47,244,424 RGD:5490225
G Mapk14 mitogen activated protein kinase 14 JBrowse link 20 5,933,290 5,995,137 RGD:6484113
G Nfkb1 nuclear factor kappa B subunit 1 JBrowse link 2 240,773,520 240,890,053 RGD:2292172
RGD:6484113
G Nfkb2 nuclear factor kappa B subunit 2 JBrowse link 1 266,050,634 266,059,277 RGD:2292172
RGD:6484113
G Nfkbia NFKB inhibitor alpha JBrowse link 6 76,267,227 76,270,457 RGD:2292172
RGD:6484113
G Nfkbib NFKB inhibitor beta JBrowse link 1 86,941,073 86,948,845 RGD:2292172
G Nfkbie NFKB inhibitor epsilon JBrowse link 9 17,828,405 17,835,240 RGD:2292172
G Nod2 nucleotide-binding oligomerization domain containing 2 JBrowse link 19 19,342,061 19,389,366 RGD:6484113
G Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit alpha JBrowse link 2 118,831,350 118,861,456 RGD:6484113
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 JBrowse link 2 31,742,326 31,826,882 RGD:6484113
G Prkca protein kinase C, alpha JBrowse link 10 96,186,509 96,585,168 RGD:6484113
G Ran RAN, member RAS oncogene family JBrowse link 12 31,319,556 31,324,105 RGD:6484113
G Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 JBrowse link 3 147,793,014 147,809,941 RGD:7800730
G Rbx1 ring-box 1 JBrowse link 7 122,700,849 122,710,907 RGD:5490225
G Rel REL proto-oncogene, NF-kB subunit JBrowse link 14 108,490,794 108,517,582 RGD:2292172
RGD:6484113
G Rela RELA proto-oncogene, NF-kB subunit JBrowse link 1 220,992,770 221,003,249 RGD:2292172
RGD:6484113
G Relb RELB proto-oncogene, NF-kB subunit JBrowse link 1 80,517,081 80,545,019 RGD:6484113
G Ripk2 receptor-interacting serine-threonine kinase 2 JBrowse link 5 29,838,713 29,870,390 RGD:6484113
G Rnf31 ring finger protein 31 JBrowse link 15 34,270,037 34,282,385 RGD:7800730
G Sharpin SHANK-associated RH domain interactor JBrowse link 7 117,413,151 117,417,455 RGD:7800730
G Skp1 S-phase kinase-associated protein 1 JBrowse link 10 37,594,578 37,609,498 RGD:5490225
G Src SRC proto-oncogene, non-receptor tyrosine kinase JBrowse link 3 153,547,807 153,595,643 RGD:6484113
G Sspo SCO-spondin JBrowse link 4 78,076,695 78,133,676 RGD:6484113
G Syk spleen associated tyrosine kinase JBrowse link 17 12,614,311 12,669,568 RGD:6484113
G Tab1 TGF-beta activated kinase 1/MAP3K7 binding protein 1 JBrowse link 7 121,350,953 121,382,100 RGD:5490225
G Tab2 TGF-beta activated kinase 1/MAP3K7 binding protein 2 JBrowse link 1 1,999,574 2,017,574 RGD:5490225
G Tab3 TGF-beta activated kinase 1 (MAP3K7) binding protein 3 JBrowse link X 54,035,958 54,090,282 RGD:5490225
G Tnf tumor necrosis factor JBrowse link 20 5,189,382 5,192,000 RGD:6484113
G Tnfrsf1a TNF receptor superfamily member 1A JBrowse link 4 157,864,905 157,877,634 RGD:6484113
G Traf6 TNF receptor associated factor 6 JBrowse link 3 91,252,829 91,271,607 RGD:6484113
G Ube2d3 ubiquitin-conjugating enzyme E2D 3 JBrowse link 2 240,626,198 240,655,874 RGD:6484113
G Xpo1 exportin 1 JBrowse link 14 108,007,421 108,049,088 RGD:6484113
nuclear factor of activated T-cells signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nfatc2 nuclear factor of activated T-cells 2 JBrowse link 3 165,241,750 165,374,644 RGD:1579951
G Nfatc3 nuclear factor of activated T-cells 3 JBrowse link 19 38,039,542 38,114,003 RGD:1579951
G Nfatc4 nuclear factor of activated T-cells 4 JBrowse link 15 34,493,163 34,502,238 RGD:1579951
nuclear factor, erythroid 2 like 2 signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:11535066
G Btrc beta-transducin repeat containing E3 ubiquitin protein ligase JBrowse link 1 265,100,094 265,270,263 RGD:11535066
RGD:11535070
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:11535066
G Chd6 chromodomain helicase DNA binding protein 6 JBrowse link 3 156,937,746 157,099,328 RGD:11535066
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:11535066
G Cul1 cullin 1 JBrowse link 4 77,211,814 77,283,369 RGD:11535066
G Cul3 cullin 3 JBrowse link 9 86,044,485 86,129,066 RGD:11535066
G Dpp3 dipeptidylpeptidase 3 JBrowse link 1 220,166,124 220,189,762 RGD:11535066
G Gadd45gip1 GADD45G interacting protein 1 JBrowse link 19 25,946,979 25,949,528 RGD:11535066
G Gsk3a glycogen synthase kinase 3 alpha JBrowse link 1 82,097,244 82,108,238 RGD:11535070
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:11535070
G Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta JBrowse link 16 74,177,233 74,230,809 RGD:11535066
G Keap1 Kelch-like ECH-associated protein 1 JBrowse link 8 22,250,518 22,259,868 RGD:727319
RGD:11535066
RGD:11530066
RGD:6902900
G Maff MAF bZIP transcription factor F JBrowse link 7 120,580,743 120,592,095 RGD:11535066
G Mafg MAF bZIP transcription factor G JBrowse link 10 109,802,877 109,811,476 RGD:11535066
G Mafk MAF bZIP transcription factor K JBrowse link 12 16,923,989 16,934,706 RGD:11535066
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:11535066
G Nfe2l2 nuclear factor, erythroid 2-like 2 JBrowse link 3 62,497,568 62,525,146 RGD:11530066
RGD:11535070
RGD:11535066
G Palb2 partner and localizer of BRCA2 JBrowse link 1 192,064,586 192,088,547 RGD:11535066
G Pgam5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase JBrowse link 12 52,467,417 52,474,533 RGD:11535066
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:11535070
G Rbx1 ring-box 1 JBrowse link 7 122,700,849 122,710,907 RGD:11535066
G Rnf4 ring finger protein 4 JBrowse link 14 81,658,400 81,679,756 RGD:11535066
G Siah2 siah E3 ubiquitin protein ligase 2 JBrowse link 2 148,874,151 148,891,900 RGD:11535066
G Skp1 S-phase kinase-associated protein 1 JBrowse link 10 37,594,578 37,609,498 RGD:11535066
G Sqstm1 sequestosome 1 JBrowse link 10 35,704,728 35,716,316 RGD:11535066
p53 signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase JBrowse link 3 10,041,820 10,145,076 RGD:6484113
RGD:8662965
G Adgrb1 adhesion G protein-coupled receptor B1 JBrowse link 7 115,766,484 115,828,514 RGD:6907045
G Akt1 AKT serine/threonine kinase 1 JBrowse link 6 137,218,398 137,239,970 RGD:6484113
G Apaf1 apoptotic peptidase activating factor 1 JBrowse link 7 31,699,309 31,784,192 RGD:6907045
G Atm ATM serine/threonine kinase JBrowse link 8 58,015,938 58,119,973 RGD:2316155
RGD:6907045
RGD:6484113
RGD:2316156
G Bax BCL2 associated X, apoptosis regulator JBrowse link 1 101,451,801 101,457,207 RGD:6907045
G Bbc3 Bcl-2 binding component 3 JBrowse link 1 78,261,491 78,267,802 RGD:6907045
G Bid BH3 interacting domain death agonist JBrowse link 4 153,439,812 153,465,247 RGD:6907045
G Brca1 BRCA1, DNA repair associated JBrowse link 10 89,394,821 89,455,093 RGD:8662965
G Casp3 caspase 3 JBrowse link 16 48,845,011 48,863,249 RGD:6907045
G Casp8 caspase 8 JBrowse link 9 65,614,142 65,662,624 RGD:6907045
G Casp9 caspase 9 JBrowse link 5 160,356,211 160,373,774 RGD:6907045
G Ccna2 cyclin A2 JBrowse link 2 123,274,727 123,282,266 RGD:6484113
G Ccnb1 cyclin B1 JBrowse link 2 30,782,133 30,791,106 RGD:6907045
G Ccnb2 cyclin B2 JBrowse link 8 76,847,972 76,861,165 RGD:6907045
G Ccnb3 cyclin B3 JBrowse link X 16,300,752 16,402,206 RGD:6907045
G Ccnd1 cyclin D1 JBrowse link 1 218,090,750 218,100,447 RGD:6907045
G Ccnd2 cyclin D2 JBrowse link 4 159,674,885 159,697,207 RGD:6907045
G Ccnd3 cyclin D3 JBrowse link 9 15,404,816 15,410,905 RGD:6907045
G Ccne1 cyclin E1 JBrowse link 1 94,485,830 94,495,112 RGD:6907045
G Ccne2 cyclin E2 JBrowse link 5 24,434,077 24,446,406 RGD:6907045
G Ccng1 cyclin G1 JBrowse link 10 25,903,925 25,910,298 RGD:6484113
RGD:6907045
G Ccng2 cyclin G2 JBrowse link 14 16,267,572 16,276,068 RGD:6907045
G Cd82 Cd82 molecule JBrowse link 3 82,324,344 82,368,846 RGD:6907045
G Cdk1 cyclin-dependent kinase 1 JBrowse link 20 20,576,341 20,591,510 RGD:6907045
G Cdk2 cyclin dependent kinase 2 JBrowse link 7 3,124,953 3,132,533 RGD:6484113
RGD:6907045
G Cdk4 cyclin-dependent kinase 4 JBrowse link 7 70,345,971 70,352,689 RGD:6907045
G Cdk6 cyclin-dependent kinase 6 JBrowse link 4 27,781,728 27,969,653 RGD:6907045
G Cdkn1a cyclin-dependent kinase inhibitor 1A JBrowse link 20 6,348,422 6,358,864 RGD:6907045
G Cdkn2a cyclin-dependent kinase inhibitor 2A JBrowse link 5 107,823,323 107,832,405 RGD:6907045
G Chek1 checkpoint kinase 1 JBrowse link 8 39,181,162 39,201,588 RGD:2316155
RGD:6907045
RGD:6484113
RGD:2316156
G Chek2 checkpoint kinase 2 JBrowse link 12 51,845,574 51,878,098 RGD:2316155
RGD:6907045
RGD:6484113
RGD:2316156
G Cop1 COP1, E3 ubiquitin ligase JBrowse link 13 76,942,883 77,076,015 RGD:6907045
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:2316155
RGD:8662965
RGD:6484113
G Cse1l chromosome segregation 1 like JBrowse link 3 163,664,074 163,702,074 RGD:6484113
G Csnk1a1 casein kinase 1, alpha 1 JBrowse link 18 56,887,722 56,910,610 RGD:6484113
G Csnk1d casein kinase 1, delta JBrowse link 10 110,147,786 110,182,413 RGD:6484113
G Csnk1e casein kinase 1, epsilon JBrowse link 7 120,651,976 120,675,559 RGD:6484113
G Csnk1g1 casein kinase 1, gamma 1 JBrowse link 8 71,533,372 71,688,483 RGD:6484113
G Csnk1g2 casein kinase 1, gamma 2 JBrowse link 7 11,944,957 11,963,268 RGD:6484113
G Csnk1g3 casein kinase 1, gamma 3 JBrowse link 18 48,831,209 48,913,341 RGD:6484113
G Cycs cytochrome c, somatic JBrowse link 4 80,331,226 80,333,326 RGD:6907045
G Cyct cytochrome c, testis JBrowse link 3 63,204,779 63,211,847 RGD:6907045
G Daxx death-domain associated protein JBrowse link 20 5,480,103 5,485,962 RGD:6484113
G Dyrk2 dual specificity tyrosine phosphorylation regulated kinase 2 JBrowse link 7 61,785,423 61,816,775 RGD:6484113
G E4f1 E4F transcription factor 1 JBrowse link 10 13,812,335 13,835,847 RGD:6484113
G Ei24 EI24, autophagy associated transmembrane protein JBrowse link 8 39,254,883 39,271,238 RGD:6907045
G Ep300 E1A binding protein p300 JBrowse link 7 122,818,194 122,889,055 RGD:6484113
G Fas Fas cell surface death receptor JBrowse link 1 252,589,785 252,624,790 RGD:6907045
G Fbxo11 F-box protein 11 JBrowse link 6 11,662,356 11,737,427 RGD:6484113
G Gadd45a growth arrest and DNA-damage-inducible, alpha JBrowse link 4 97,782,512 97,784,814 RGD:6907045
G Gadd45b growth arrest and DNA-damage-inducible, beta JBrowse link 7 11,646,283 11,648,338 RGD:6907045
G Gadd45g growth arrest and DNA-damage-inducible, gamma JBrowse link 17 13,391,474 13,393,219 RGD:6907045
G Gsk3b glycogen synthase kinase 3 beta JBrowse link 11 65,060,884 65,208,842 RGD:6484113
G Gtse1 G-2 and S-phase expressed 1 JBrowse link 7 126,736,416 126,753,221 RGD:6907045
G Hdac1 histone deacetylase 1 JBrowse link 5 147,716,664 147,743,723 RGD:2316155
G Hipk2 homeodomain interacting protein kinase 2 JBrowse link 4 66,438,390 66,625,183 RGD:6484113
G Igf1 insulin-like growth factor 1 JBrowse link 7 28,412,123 28,491,815 RGD:6907045
G Igfbp3 insulin-like growth factor binding protein 3 JBrowse link 14 87,457,647 87,465,374 RGD:6907045
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:8662965
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:8662965
G Kat5 lysine acetyltransferase 5 JBrowse link 1 220,967,795 220,974,596 RGD:2316155
RGD:8662965
RGD:6484113
G Kat8 lysine acetyltransferase 8 JBrowse link 1 199,360,645 199,372,925 RGD:2316155
RGD:6484113
G Mapk14 mitogen activated protein kinase 14 JBrowse link 20 5,933,290 5,995,137 RGD:6484113
G Mapk8 mitogen-activated protein kinase 8 JBrowse link 16 9,620,854 9,709,342 RGD:6484113
G Mapk9 mitogen-activated protein kinase 9 JBrowse link 10 35,333,859 35,374,364 RGD:6484113
G Mdm2 MDM2 proto-oncogene JBrowse link 7 60,719,060 60,743,618 RGD:2316155
RGD:6907045
RGD:6484113
RGD:2316156
G Mdm4 MDM4 regulator of p53 JBrowse link 13 49,786,776 49,828,780 RGD:2316155
RGD:6907045
RGD:6484113
RGD:2316156
G Muc1 mucin 1, cell surface associated JBrowse link 2 188,543,137 188,547,874 RGD:8662965
G Nedd8 NEDD8 ubiquitin like modifier JBrowse link 15 34,340,607 34,352,673 RGD:6484113
G Perp PERP, TP53 apoptosis effector JBrowse link 1 14,224,392 14,236,838 RGD:6907045
G Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 JBrowse link 8 21,669,236 21,680,615 RGD:6484113
RGD:8662965
G Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 JBrowse link 18 62,159,128 62,179,635 RGD:6907045
G Pou4f1 POU class 4 homeobox 1 JBrowse link 15 88,618,255 88,622,712 RGD:8662965
G Pou4f2 POU class 4 homeobox 2 JBrowse link 19 33,160,180 33,163,821 RGD:8662965
G Ppm1d protein phosphatase, Mg2+/Mn2+ dependent, 1D JBrowse link 10 72,909,550 72,945,884 RGD:6484113
RGD:6907045
G Ppp1r13b protein phosphatase 1, regulatory subunit 13B JBrowse link 6 136,397,658 136,469,757 RGD:8662965
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like JBrowse link 1 80,271,288 80,290,946 RGD:6484113
RGD:8662965
G Ppp2ca protein phosphatase 2 catalytic subunit alpha JBrowse link 10 37,534,449 37,554,861 RGD:6484113
G Prkcd protein kinase C, delta JBrowse link 16 6,655,131 6,675,746 RGD:6484113
G Prmt5 protein arginine methyltransferase 5 JBrowse link 15 33,156,508 33,165,893 RGD:6484113
G Pten phosphatase and tensin homolog JBrowse link 1 251,421,814 251,487,634 RGD:6907045
G Ptpa protein phosphatase 2 phosphatase activator JBrowse link 3 8,982,122 9,012,585 RGD:6484113
G Rassf1 Ras association domain family member 1 JBrowse link 8 116,307,149 116,318,289 RGD:6484113
G Rchy1 ring finger and CHY zinc finger domain containing 1 JBrowse link 14 17,615,968 17,631,715 RGD:2316155
RGD:6907045
RGD:6484113
G Rpl11 ribosomal protein L11 JBrowse link 5 154,390,809 154,394,412 RGD:6484113
G Rpl23 ribosomal protein L23 JBrowse link 10 85,721,398 85,725,359 RGD:6484113
G Rpl5l1 ribosomal protein L5-like 1 JBrowse link 10 112,564,193 112,565,170 RGD:6484113
G Rprm reprimo, TP53 dependent G2 arrest mediator homolog JBrowse link 3 39,595,301 39,596,718 RGD:6907045
G Rrm2 ribonucleotide reductase regulatory subunit M2 JBrowse link 6 43,884,627 43,890,818 RGD:6907045
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B JBrowse link 7 76,750,045 76,780,817 RGD:6907045
G Serpinb5 serpin family B member 5 JBrowse link 13 26,903,052 26,923,250 RGD:6907045
G Serpine1 serpin family E member 1 JBrowse link 12 22,641,104 22,651,482 RGD:6907045
G Sesn1 sestrin 1 JBrowse link 20 46,667,116 46,758,306 RGD:6907045
G Sesn3 sestrin 3 JBrowse link 8 12,823,060 12,878,749 RGD:6907045
G Setd7 SET domain containing 7, histone lysine methyltransferase JBrowse link 2 140,576,188 140,618,405 RGD:2316155
RGD:6484113
G Sfn stratifin JBrowse link 5 151,823,422 151,824,937 RGD:6907045
G Shisa5 shisa family member 5 JBrowse link 8 117,780,992 117,795,923 RGD:6907045
G Siah1 siah E3 ubiquitin protein ligase 1 JBrowse link 19 21,372,163 21,395,773 RGD:6907045
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:2316155
G Skp2 S-phase kinase associated protein 2 JBrowse link 2 58,506,146 58,534,211 RGD:6484113
G Smyd2 SET and MYND domain containing 2 JBrowse link 13 108,642,156 108,686,293 RGD:2316155
RGD:6484113
G Steap3 STEAP3 metalloreductase JBrowse link 13 36,257,220 36,274,144 RGD:6907045
G Tp53 tumor protein p53 JBrowse link 10 56,186,299 56,198,449 RGD:2316155
RGD:6907045
RGD:6484113
RGD:2316156
G Tp53bp2 tumor protein p53 binding protein, 2 JBrowse link 13 100,817,206 100,873,837 RGD:8662965
G Tp73 tumor protein p73 JBrowse link 5 171,355,876 171,415,354 RGD:6907045
G Trim28 tripartite motif-containing 28 JBrowse link 1 65,544,369 65,551,043 RGD:6484113
G Tsc2 TSC complex subunit 2 JBrowse link 10 13,962,006 13,996,684 RGD:6907045
G Ttc5 tetratricopeptide repeat domain 5 JBrowse link 15 27,698,375 27,715,970 RGD:6484113
G Ube2d1 ubiquitin-conjugating enzyme E2D 1 JBrowse link 20 18,547,370 18,580,291 RGD:6484113
G Usp7 ubiquitin specific peptidase 7 JBrowse link 10 6,930,462 7,019,910 RGD:2316155
RGD:6484113
G Ybx1 Y box binding protein 1 JBrowse link 5 138,319,754 138,336,721 RGD:8662965
G Yy1 YY1 transcription factor JBrowse link 6 132,702,443 132,726,848 RGD:6484113
G Zfp385a zinc finger protein 385A JBrowse link 7 144,939,616 144,966,364 RGD:8662965
G Zfp420 zinc finger protein 420 JBrowse link 1 88,531,975 88,564,480 RGD:8662965
G Zmat3 zinc finger, matrin type 3 JBrowse link 2 118,715,229 118,746,109 RGD:6907045
G Znhit1 zinc finger, HIT-type containing 1 JBrowse link 12 22,726,643 22,732,917 RGD:8662965
retinoic acid signaling pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ncoa1 nuclear receptor coactivator 1 JBrowse link 6 28,677,563 28,931,844 RGD:6484676
G Ncoa2 nuclear receptor coactivator 2 JBrowse link 5 5,466,544 5,696,540 RGD:6484676
G Ncoa3 nuclear receptor coactivator 3 JBrowse link 3 162,692,176 162,788,582 RGD:6484676
G Ncor1 nuclear receptor co-repressor 1 JBrowse link 10 48,629,121 48,772,890 RGD:6484676
G Ncor2 nuclear receptor co-repressor 2 JBrowse link 12 36,871,917 37,033,701 RGD:6484676
G Nrip1 nuclear receptor interacting protein 1 JBrowse link 11 14,658,225 14,742,478 RGD:6484676
G Psmc5 proteasome 26S subunit, ATPase 5 JBrowse link 10 94,445,877 94,451,811 RGD:6484676
G Rara retinoic acid receptor, alpha JBrowse link 10 86,838,819 86,884,224 RGD:6484674
RGD:6484731
RGD:6484676
G Rarb retinoic acid receptor, beta JBrowse link 15 9,915,223 10,262,599 RGD:6484674
RGD:6484731
RGD:6484676
G Rarg retinoic acid receptor, gamma JBrowse link 7 143,840,739 143,863,206 RGD:6484674
RGD:6484676
RGD:6484731
G Rxra retinoid X receptor alpha JBrowse link 3 6,272,560 6,295,354 RGD:6484675
RGD:6484731
G Rxrb retinoid X receptor beta JBrowse link 20 3,822,673 3,829,138 RGD:6484675
RGD:6484731
G Rxrg retinoid X receptor gamma JBrowse link 13 85,818,473 85,868,555 RGD:6484675
RGD:6484731
RNA polymerase I transcription pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cavin1 caveolae associated protein 1 JBrowse link 10 88,862,513 88,874,495 RGD:9588249
G Cd3eap CD3e molecule associated protein JBrowse link 1 80,267,725 80,271,001 RGD:9588244
RGD:9588262
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:9588246
G Crebbp CREB binding protein JBrowse link 10 11,590,994 11,721,039 RGD:9588250
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:9588246
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:9588246
G Ncl nucleolin JBrowse link 9 93,369,119 93,377,643 RGD:9588244
RGD:9588251
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:9588246
G Polr1a RNA polymerase I subunit A JBrowse link 4 99,822,964 99,903,969 RGD:9588244
RGD:9588262
G Polr1b RNA polymerase I subunit B JBrowse link 3 121,632,043 121,656,506 RGD:9588244
RGD:9588262
G Polr1c RNA polymerase I and III subunit C JBrowse link 9 17,120,759 17,124,871 RGD:9588244
RGD:9588262
G Polr1e RNA polymerase I subunit E JBrowse link 5 60,572,573 60,588,097 RGD:9588244
RGD:9588262
G Polr2e RNA polymerase II subunit E JBrowse link 7 12,532,785 12,536,797 RGD:9588244
RGD:9588262
G Polr2f RNA polymerase II subunit F JBrowse link 7 120,380,543 120,392,214 RGD:9588244
RGD:9588262
G Polr2k RNA polymerase II subunit K JBrowse link 7 74,939,010 74,992,594 RGD:9588244
RGD:9588262
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor JBrowse link 10 3,170,387 3,214,648 RGD:9588243
RGD:9588244
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) JBrowse link 3 111,478,350 111,537,941 RGD:9588246
G Sirt1 sirtuin 1 JBrowse link 20 26,831,971 26,851,587 RGD:9588250
G Sirt7 sirtuin 7 JBrowse link 10 109,796,046 109,802,821 RGD:9588250
G Ssrp1 structure specific recognition protein 1 JBrowse link 3 72,447,516 72,457,621 RGD:9588245
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 15 28,574,841 28,611,959 RGD:9588245
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:9588244
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:9588244
G Taf12 TATA-box binding protein associated factor 12 JBrowse link 5 150,459,701 150,476,521 RGD:9588243
RGD:9588244
G Taf1a TATA-box binding protein associated factor, RNA polymerase I subunit A JBrowse link 13 101,770,278 101,807,975 RGD:9588243
RGD:9588244
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B JBrowse link 6 43,644,931 43,722,124 RGD:9588243
RGD:9588244
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C JBrowse link 19 52,246,061 52,252,642 RGD:9588243
RGD:9588244
G Taf1d TATA-box binding protein associated factor, RNA polymerase I subunit D JBrowse link 8 13,861,242 13,871,508 RGD:9588243
RGD:9588244
G Tbp TATA box binding protein JBrowse link 1 57,491,381 57,509,335 RGD:9588243
RGD:9588244
G Ttf1 transcription termination factor 1 JBrowse link 3 7,635,630 7,660,153 RGD:9588249
G Twistnb TWIST neighbor JBrowse link 6 52,751,106 52,768,574 RGD:9588244
RGD:9588262
G Ubtf upstream binding transcription factor JBrowse link 10 90,250,275 90,265,772 RGD:9588243
RGD:9588244
G Wdr61 WD repeat domain 61 JBrowse link 8 59,296,339 59,313,663 RGD:9588246
G Znrd1 zinc ribbon domain containing 1 JBrowse link 20 2,088,518 2,092,436 RGD:9588244
RGD:9588262
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Aff1 AF4/FMR2 family, member 1 JBrowse link 14 7,222,883 7,384,916 RGD:9681740
G Aff4 AF4/FMR2 family, member 4 JBrowse link 10 38,692,167 38,773,021 RGD:9681740
G Ccnk cyclin K JBrowse link 6 132,090,235 132,113,560 RGD:9681735
G Ccnt1 cyclin T1 JBrowse link 7 140,215,052 140,245,958 RGD:9681735
G Ccnt2 cyclin T2 JBrowse link 13 44,475,959 44,516,892 RGD:9681735
G Cdc73 cell division cycle 73 JBrowse link 13 60,403,771 60,496,511 RGD:9588246
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:9681735
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 175,839,140 175,869,167 RGD:9588246
G Eaf1 ELL associated factor 1 JBrowse link 16 7,588,217 7,602,966 RGD:9681740
G Eaf2 ELL associated factor 2 JBrowse link 11 66,878,658 66,923,092 RGD:9681740
G Ell elongation factor for RNA polymerase II JBrowse link 16 20,594,129 20,641,441 RGD:9681740
G Ell2 elongation factor for RNA polymerase II 2 JBrowse link 2 2,456,189 2,525,590 RGD:9681740
G Ell3 elongation factor for RNA polymerase II 3 JBrowse link 3 113,400,395 113,405,869 RGD:9681740
G Gtf2f1 general transcription factor IIF subunit 1 JBrowse link 9 10,032,806 10,042,392 RGD:9681735
G Gtf2f2 general transcription factor IIF subunit 2 JBrowse link 15 57,942,057 58,068,892 RGD:9681735
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 8 82,380,906 82,405,293 RGD:9588246
G Mllt1 MLLT1, super elongation complex subunit JBrowse link 9 10,110,389 10,155,305 RGD:9681740
G Mllt3 MLLT3, super elongation complex subunit JBrowse link 5 106,103,498 106,202,559 RGD:9681740
G Ncbp1 nuclear cap binding protein subunit 1 JBrowse link 5 61,734,118 61,767,098 RGD:9684851
G Ncbp2 nuclear cap binding protein subunit 2 JBrowse link 11 72,071,838 72,103,087 RGD:9684851
G Nelfa negative elongation factor complex member A JBrowse link 14 82,093,837 82,117,913 RGD:9681735
G Nelfb negative elongation factor complex member B JBrowse link 3 2,414,448 2,431,148 RGD:9681735
G Nelfcd negative elongation factor complex member C/D JBrowse link 3 172,510,840 172,527,118 RGD:9681735
G Nelfe negative elongation factor complex member E JBrowse link 20 4,530,328 4,536,085 RGD:9681735
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 1 85,362,421 85,367,999 RGD:9588246
G Rngtt RNA guanylyltransferase and 5'-phosphatase JBrowse link 5 48,561,325 48,779,214 RGD:9684851
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) JBrowse link 3 111,478,350 111,537,941 RGD:9588246
G Ssrp1 structure specific recognition protein 1 JBrowse link 3 72,447,516 72,457,621 RGD:9681735
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 15 28,574,841 28,611,959 RGD:9681735
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 10 75,032,365 75,038,547 RGD:9681735
G Supt5h SPT5 homolog, DSIF elongation factor subunit JBrowse link 1 85,437,780 85,466,854 RGD:9681735
G Tcea1 transcription elongation factor A1 JBrowse link 5 14,511,183 14,548,494 RGD:9681735
G Tcea2 transcription elongation factor A2 JBrowse link 3 177,187,686 177,195,898 RGD:9681735
G Tcea3 transcription elongation factor A3 JBrowse link 5 154,598,765 154,634,687 RGD:9681735
G Wdr61 WD repeat domain 61 JBrowse link 8 59,296,339 59,313,663 RGD:9588246
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Atxn7 ataxin 7 JBrowse link 15 12,421,432 12,569,649 RGD:9681728
G Atxn7l3 ataxin 7-like 3 JBrowse link 10 90,234,749 90,241,757 RGD:9681728
G Ccnh cyclin H JBrowse link 2 13,593,100 13,613,910 RGD:9681726
G Cdk7 cyclin-dependent kinase 7 JBrowse link 2 30,710,642 30,735,522 RGD:9681726
G Dr1 down-regulator of transcription 1 JBrowse link 14 2,463,651 2,475,004 RGD:9681728
G Eny2 ENY2, transcription and export complex 2 subunit JBrowse link 7 83,348,656 83,358,430 RGD:9681728
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 1 80,293,574 80,307,334 RGD:9681726
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 18 25,037,668 25,068,380 RGD:9681726
G Ercc5 ERCC excision repair 5, endonuclease JBrowse link 9 50,928,847 50,970,962 RGD:9681726
G Gtf2a1 general transcription factor 2A subunit 1 JBrowse link 6 115,321,110 115,352,659 RGD:9681721
G Gtf2a2 general transcription factor 2A subunit 2 JBrowse link 8 76,422,341 76,435,587 RGD:9681721
G Gtf2b general transcription factor IIB JBrowse link 2 248,709,433 248,727,741 RGD:9681721
G Gtf2e1 general transcription factor IIE subunit 1 JBrowse link 11 66,078,786 66,111,394 RGD:9681721
G Gtf2e2 general transcription factor IIE subunit 2 JBrowse link 16 62,113,846 62,164,339 RGD:9681721
G Gtf2f1 general transcription factor IIF subunit 1 JBrowse link 9 10,032,806 10,042,392 RGD:9681721
G Gtf2f2 general transcription factor IIF subunit 2 JBrowse link 15 57,942,057 58,068,892 RGD:9681721
G Gtf2h1 general transcription factor IIH subunit 1 JBrowse link 1 102,849,618 102,877,939 RGD:9681726
G Gtf2h2 general transcription factor IIH subunit 2 JBrowse link 2 30,494,718 30,522,716 RGD:9681726
G Gtf2h3 general transcription factor IIH subunit 3 JBrowse link 12 37,427,556 37,444,027 RGD:9681726
G Gtf2h4 general transcription factor 2H subunit 4 JBrowse link 20 3,582,688 3,588,373 RGD:9681726
G Gtf2h5 general transcription factor IIH subunit 5 JBrowse link 1 46,978,345 46,985,032 RGD:9681726
G Hcfc2 host cell factor C2 JBrowse link 7 27,107,931 27,136,658 RGD:9681728
G Kat14 lysine acetyltransferase 14 JBrowse link 3 138,508,899 138,549,437 RGD:9681728
G Kat2a lysine acetyltransferase 2A JBrowse link 10 88,611,586 88,619,558 RGD:9681728
G Kat2b lysine acetyltransferase 2B JBrowse link 9 4,440,982 4,492,949 RGD:9681728
G Mbip MAP3K12 binding inhibitory protein 1 JBrowse link 6 77,226,439 77,243,696 RGD:9681728
G Mnat1 MNAT1 component of CDK activating kinase JBrowse link 6 95,995,341 96,153,331 RGD:9681726
G Pole3 DNA polymerase epsilon 3, accessory subunit JBrowse link 5 78,380,813 78,384,047 RGD:9681728
G Sgf29 SAGA complex associated factor 29 JBrowse link 1 198,066,974 198,100,494 RGD:9681728
G Supt20h SPT20 homolog, SAGA complex component JBrowse link 2 143,892,609 143,925,733 RGD:9681728
G Supt3h SPT3 homolog, SAGA and STAGA complex component JBrowse link 9 18,249,565 18,604,814 RGD:9681728
G Supt7l SPT7 like, STAGA complex subunit gamma JBrowse link 6 26,241,672 26,251,810 RGD:9681728
G Tada1 transcriptional adaptor 1 JBrowse link 13 84,588,587 84,602,542 RGD:9681728
G Tada2a transcriptional adaptor 2A JBrowse link 10 71,393,701 71,441,435 RGD:9681728
G Tada2b transcriptional adaptor 2B JBrowse link 14 79,446,057 79,457,341 RGD:9681728
G Tada3 transcriptional adaptor 3 JBrowse link 4 145,318,417 145,330,291 RGD:9681728
G Taf1 TATA-box binding protein associated factor 1 JBrowse link X 71,412,291 71,486,456 RGD:9681723
G Taf10 TATA-box binding protein associated factor 10 JBrowse link 1 170,585,160 170,586,428 RGD:9681723
RGD:9681728
G Taf11 TATA-box binding protein associated factor 11 JBrowse link 20 7,476,648 7,484,417 RGD:9681723
G Taf12 TATA-box binding protein associated factor 12 JBrowse link 5 150,459,701 150,476,521 RGD:9681723
RGD:9681728
G Taf13 TATA-box binding protein associated factor 13 JBrowse link 2 211,359,623 211,370,285 RGD:9681723
G Taf15 TATA-box binding protein associated factor 15 JBrowse link 10 70,689,863 70,721,892 RGD:9681723
G Taf2 TATA-box binding protein associated factor 2 JBrowse link 7 94,698,987 94,755,924 RGD:9681723
G Taf3 TATA-box binding protein associated factor 3 JBrowse link 17 72,240,785 72,393,448 RGD:9681723
G Taf4 TATA-box binding protein associated factor 4 JBrowse link 3 175,300,842 175,364,655 RGD:9681723
G Taf5 TATA-box binding protein associated factor 5 JBrowse link 1 266,844,480 266,859,965 RGD:9681723
G Taf5l TATA-box binding protein associated factor 5 like JBrowse link 19 56,781,854 56,801,005 RGD:9681728
G Taf6 TATA-box binding protein associated factor 6 JBrowse link 12 19,320,269 19,328,706 RGD:9681723
G Taf6l TATA-box binding protein associated factor 6 like JBrowse link 1 224,974,238 224,986,819 RGD:9681728
G Taf7 TATA-box binding protein associated factor 7 JBrowse link 18 30,779,149 30,781,297 RGD:9681723
G Taf8 TATA-box binding protein associated factor 8 JBrowse link 9 15,513,048 15,532,992 RGD:9681723
G Taf9 TATA-box binding protein associated factor 9 JBrowse link 2 30,664,407 30,668,414 RGD:9681723
RGD:9681728
G Tbp TATA box binding protein JBrowse link 1 57,491,381 57,509,335 RGD:9681721
RGD:9681723
G Trrap transformation/transcription domain-associated protein JBrowse link 12 11,537,950 11,627,563 RGD:9681728
G Usp22 ubiquitin specific peptidase 22 JBrowse link 10 47,429,201 47,453,298 RGD:9681728
G Wdr5 WD repeat domain 5 JBrowse link 3 6,061,892 6,080,724 RGD:9681728
G Yeats2 YEATS domain containing 2 JBrowse link 11 84,330,064 84,595,296 RGD:9681728
G Zzz3 zinc finger, ZZ-type containing 3 JBrowse link 2 257,602,924 257,671,783 RGD:9681728
RNA polymerase II transcription pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ccnc cyclin C JBrowse link 5 35,865,598 35,883,732 RGD:9681732
G Cdc14a cell division cycle 14A JBrowse link 2 219,302,577 219,458,345 RGD:9681737
RGD:9681738
G Cdc14b cell division cycle 14B JBrowse link 17 1,709,703 1,797,732 RGD:9681737
RGD:9681738
G Cdk12 cyclin-dependent kinase 12 JBrowse link 10 86,157,186 86,210,657 RGD:9681737
RGD:9681738
G Cdk19 cyclin-dependent kinase 19 JBrowse link 20 45,458,499 45,598,799 RGD:9681732
G Cdk7 cyclin-dependent kinase 7 JBrowse link 2 30,710,642 30,735,522 RGD:9681737
RGD:9681738
G Cdk8 cyclin-dependent kinase 8 JBrowse link 12 10,496,273 10,561,335 RGD:9681732
RGD:9681738
RGD:9681737
G Cdk9 cyclin-dependent kinase 9 JBrowse link 3 11,742,269 11,747,117 RGD:9681737
RGD:9681738
G Ctdp1 CTD phosphatase subunit 1 JBrowse link 18 76,922,913 76,985,095 RGD:9681737
RGD:9681738
G Ctdsp1 CTD small phosphatase 1 JBrowse link 9 81,672,613 81,677,979 RGD:9681737
RGD:9681738
G Med1 mediator complex subunit 1 JBrowse link 10 86,101,560 86,145,271 RGD:9681732
G Med10 mediator complex subunit 10 JBrowse link 1 36,107,249 36,118,887 RGD:9681732
G Med11 mediator complex subunit 11 JBrowse link 10 57,057,272 57,059,415 RGD:9681732
G Med12 mediator complex subunit 12 JBrowse link X 71,174,653 71,197,812 RGD:9681732
G Med12l mediator complex subunit 12-like JBrowse link 2 149,213,134 149,316,569 RGD:9681732
G Med13 mediator complex subunit 13 JBrowse link 10 73,702,327 73,787,084 RGD:9681732
G Med13l mediator complex subunit 13-like JBrowse link 12 43,421,317 43,576,859 RGD:9681732
G Med14 mediator complex subunit 14 JBrowse link X 10,964,035 11,082,403 RGD:9681732
G Med15 mediator complex subunit 15 JBrowse link 11 87,553,868 87,628,631 RGD:9681732
G Med16 mediator complex subunit 16 JBrowse link 7 12,619,739 12,632,241 RGD:9681732
G Med17 mediator complex subunit 17 JBrowse link 8 13,522,257 13,835,302 RGD:9681732
G Med18 mediator complex subunit 18 JBrowse link 5 150,649,136 150,654,123 RGD:9681732
G Med19 mediator complex subunit 19 JBrowse link 3 72,080,630 72,091,150 RGD:9681732
G Med20 mediator complex subunit 20 JBrowse link 9 15,379,379 15,393,131 RGD:9681732
G Med21 mediator complex subunit 21 JBrowse link 4 180,961,194 180,968,155 RGD:9681732
G Med23 mediator complex subunit 23 JBrowse link 1 21,539,765 21,587,675 RGD:9681732
G Med24 mediator complex subunit 24 JBrowse link 10 86,620,166 86,658,014 RGD:9681732
G Med25 mediator complex subunit 25 JBrowse link 1 100,872,240 100,887,864 RGD:9681732
G Med26 mediator complex subunit 26 JBrowse link 16 19,001,061 19,050,874 RGD:9681732
G Med27 mediator complex subunit 27 JBrowse link 3 7,884,793 8,059,003 RGD:9681732
G Med28 mediator complex subunit 28 JBrowse link 14 70,089,225 70,098,021 RGD:9681732
G Med29 mediator complex subunit 29 JBrowse link 1 85,368,288 85,373,691 RGD:9681732
G Med30 mediator complex subunit 30 JBrowse link 7 92,234,584 92,260,019 RGD:9681732
G Med31 mediator complex subunit 31 JBrowse link 10 58,780,987 58,784,369 RGD:9681732
G Med4 mediator complex subunit 4 JBrowse link 15 55,406,543 55,416,816 RGD:9681732
G Med6 mediator complex subunit 6 JBrowse link 6 105,302,558 105,316,024 RGD:9681732
G Med7 mediator complex subunit 7 JBrowse link 10 31,532,190 31,536,405 RGD:9681732
G Med9 mediator complex subunit 9 JBrowse link 10 46,314,639 46,329,374 RGD:9681732
G Polr2a RNA polymerase II subunit A JBrowse link 10 56,339,277 56,364,888 RGD:9588243
G Polr2b RNA polymerase II subunit B JBrowse link 14 33,070,104 33,107,792 RGD:9588243
G Polr2c RNA polymerase II subunit C JBrowse link 19 10,575,060 10,581,842 RGD:9588243
G Polr2d RNA polymerase II subunit D JBrowse link 18 24,570,762 24,577,894 RGD:9588243
G Polr2e RNA polymerase II subunit E JBrowse link 7 12,532,785 12,536,797 RGD:9588243
G Polr2f RNA polymerase II subunit F JBrowse link 7 120,380,543 120,392,214 RGD:9588243
G Polr2g RNA polymerase II subunit G JBrowse link 1 224,991,250 224,998,355 RGD:9588243
G Polr2j RNA polymerase II subunit J JBrowse link 12 23,587,222 23,592,774 RGD:9588243
G Polr2k RNA polymerase II subunit K JBrowse link 7 74,939,010 74,992,594 RGD:9588243
G Rpap2 RNA polymerase II associated protein 2 JBrowse link 14 3,125,595 3,204,590 RGD:9681737
RGD:9681738
G Ssu72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 5 173,152,964 173,182,720 RGD:9681737
RGD:9681738
RNA polymerase II transcription termination pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Clp1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 3 72,125,269 72,137,122 RGD:9681741
RGD:9681742
G Cpsf1 cleavage and polyadenylation specific factor 1 JBrowse link 7 117,661,779 117,672,373 RGD:9681741
RGD:9681742
G Cpsf2 cleavage and polyadenylation specific factor 2 JBrowse link 6 125,870,372 125,898,039 RGD:9681741
RGD:9681742
G Cpsf3 cleavage and polyadenylation specific factor 3 JBrowse link 6 43,363,792 43,391,712 RGD:9681741
RGD:9681742
G Cpsf6 cleavage and polyadenylation specific factor 6 JBrowse link 7 60,385,688 60,417,661 RGD:9681741
RGD:9681742
G Cpsf7 cleavage and polyadenylation specific factor 7 JBrowse link 1 226,572,399 226,596,185 RGD:9681741
RGD:9681742
G Cstf1 cleavage stimulation factor subunit 1 JBrowse link 3 170,380,413 170,392,162 RGD:9681741
RGD:9681742
G Cstf2 cleavage stimulation factor subunit 2 JBrowse link X 104,882,726 104,909,746 RGD:9681741
RGD:9681742
G Cstf2t cleavage stimulation factor subunit 2, tau variant JBrowse link 1 249,574,954 249,578,520 RGD:9681741
RGD:9681742
G Cstf3 cleavage stimulation factor subunit 3 JBrowse link 3 94,530,586 94,603,378 RGD:9681741
RGD:9681742
G Dxo decapping exoribonuclease JBrowse link 20 4,517,307 4,519,391 RGD:9681741
G Fip1l1 factor interacting with PAPOLA and CPSF1 JBrowse link 14 36,150,381 36,208,395 RGD:9681741
RGD:9681742
G Nudt21 nudix hydrolase 21 JBrowse link 19 11,451,366 11,470,637 RGD:9681741
RGD:9681742
G Pcf11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 1 157,463,014 157,494,134 RGD:9681741
RGD:9681742
G Sympk symplekin JBrowse link 1 79,931,097 79,959,461 RGD:9681741
RGD:9681742
G Wdr33 WD repeat domain 33 JBrowse link 18 24,584,832 24,689,681 RGD:9681741
RGD:9681742
G Xrn2 5'-3' exoribonuclease 2 JBrowse link 3 141,224,858 141,298,272 RGD:9681741
RNA polymerase III transcription pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Bdp1 B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB JBrowse link 2 30,248,458 30,340,211 RGD:9685218
RGD:9588284
G Brf1 BRF1, RNA polymerase III transcription initiation factor subunit JBrowse link 6 137,762,230 137,808,573 RGD:9685218
RGD:9588284
G Brf2 BRF2, RNA polymerase III transcription initiation factor subunit JBrowse link 16 69,089,955 69,094,678 RGD:9685218
RGD:9588284
G Crcp CGRP receptor component JBrowse link 12 30,125,237 30,160,857 RGD:9685217
G Gtf3a general transcription factor III A JBrowse link 12 9,856,841 9,864,791 RGD:9588284
G Gtf3c1 general transcription factor IIIC subunit 1 JBrowse link 1 197,032,473 197,098,676 RGD:9588284
G Gtf3c2 general transcription factor IIIC subunit 2 JBrowse link 6 26,560,601 26,584,533 RGD:9588284
G Gtf3c3 general transcription factor IIIC subunit 3 JBrowse link 9 60,999,159 61,033,612 RGD:9588284
G Gtf3c4 general transcription factor IIIC subunit 4 JBrowse link 3 7,404,857 7,422,779 RGD:9588284
G Gtf3c5 general transcription factor IIIC subunit 5 JBrowse link 3 7,144,354 7,164,678 RGD:9588284
G Gtf3c6 general transcription factor 3C subunit 6 JBrowse link 20 45,347,788 45,356,868 RGD:9588284
G Maf1 MAF1 homolog, negative regulator of RNA polymerase III JBrowse link 7 117,417,643 117,420,722 RGD:9588284
RGD:9685221
G Polr1c RNA polymerase I and III subunit C JBrowse link 9 17,120,759 17,124,871 RGD:9685217
RGD:9685218
G Polr2e RNA polymerase II subunit E JBrowse link 7 12,532,785 12,536,797 RGD:9685217
RGD:9685218
G Polr2f RNA polymerase II subunit F JBrowse link 7 120,380,543 120,392,214 RGD:9685217
RGD:9685218
G Polr2k RNA polymerase II subunit K JBrowse link 7 74,939,010 74,992,594 RGD:9685217
RGD:9685218
G Polr3a RNA polymerase III subunit A JBrowse link 16 717,821 756,002 RGD:9685217
RGD:9685218
G Polr3b RNA polymerase III subunit B JBrowse link 7 24,745,051 24,851,227 RGD:9685217
RGD:9685218
G Polr3c RNA polymerase III subunit C JBrowse link 2 198,836,282 198,852,368 RGD:9685217
RGD:9685218
G Polr3d RNA polymerase III subunit D JBrowse link 15 52,129,471 52,134,140 RGD:9685217
RGD:9685218
G Polr3e RNA polymerase III subunit E JBrowse link 1 190,852,954 190,881,539 RGD:9685217
RGD:9685218
G Polr3f RNA polymerase III subunit F JBrowse link 3 138,684,685 138,701,055 RGD:9685217
RGD:9685218
G Polr3g RNA polymerase III subunit G