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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II transcription pathway
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Accession:PW:0000127 term browser browse the term
Definition:The series of events governing the synthesis of protein-coding messenger RNA (mRNA) precursor and of many classes of non-coding genes.

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RNA polymerase II transcription pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CCNC cyclin C JBrowse link 6 99,542,387 99,568,814 RGD:9681732
G CDC14A cell division cycle 14A JBrowse link 1 100,345,001 100,520,281 RGD:9681737
RGD:9681738
G CDC14B cell division cycle 14B JBrowse link 9 96,492,743 96,619,843 RGD:9681737
RGD:9681738
G CDK12 cyclin dependent kinase 12 JBrowse link 17 39,461,486 39,567,560 RGD:9681737
RGD:9681738
G CDK19 cyclin dependent kinase 19 JBrowse link 6 110,609,978 110,816,531 RGD:9681732
G CDK7 cyclin dependent kinase 7 JBrowse link 5 69,234,795 69,277,430 RGD:9681737
RGD:9681738
G CDK8 cyclin dependent kinase 8 JBrowse link 13 26,254,125 26,405,238 RGD:9681732
RGD:9681738
RGD:9681737
G CDK9 cyclin dependent kinase 9 JBrowse link 9 127,786,034 127,790,792 RGD:9681737
RGD:9681738
G CTDP1 CTD phosphatase subunit 1 JBrowse link 18 79,679,803 79,756,625 RGD:9681737
RGD:9681738
G CTDSP1 CTD small phosphatase 1 JBrowse link 2 218,398,233 218,405,941 RGD:9681737
RGD:9681738
G MED1 mediator complex subunit 1 JBrowse link 17 39,404,285 39,451,281 RGD:9681732
G MED10 mediator complex subunit 10 JBrowse link 5 6,371,874 6,378,547 RGD:9681732
G MED11 mediator complex subunit 11 JBrowse link 17 4,731,428 4,733,607 RGD:9681732
G MED12 mediator complex subunit 12 JBrowse link X 71,118,596 71,142,450 RGD:9681732
G MED12L mediator complex subunit 12L JBrowse link 3 151,085,665 151,436,677 RGD:9681732
G MED13 mediator complex subunit 13 JBrowse link 17 61,942,605 62,065,983 RGD:9681732
G MED13L mediator complex subunit 13L JBrowse link 12 115,958,576 116,277,219 RGD:9681732
G MED14 mediator complex subunit 14 JBrowse link X 40,648,305 40,736,122 RGD:9681732
G MED15 mediator complex subunit 15 JBrowse link 22 20,507,582 20,587,621 RGD:9681732
G MED16 mediator complex subunit 16 JBrowse link 19 867,961 893,228 RGD:9681732
G MED17 mediator complex subunit 17 JBrowse link 11 93,784,282 93,814,963 RGD:9681732
G MED18 mediator complex subunit 18 JBrowse link 1 28,329,040 28,335,967 RGD:9681732
G MED19 mediator complex subunit 19 JBrowse link 11 57,703,709 57,712,323 RGD:9681732
G MED20 mediator complex subunit 20 JBrowse link 6 41,905,353 41,921,139 RGD:9681732
G MED21 mediator complex subunit 21 JBrowse link 12 27,022,522 27,030,673 RGD:9681732
G MED22 mediator complex subunit 22 JBrowse link 9 133,338,312 133,348,156 RGD:9681732
G MED23 mediator complex subunit 23 JBrowse link 6 131,573,966 131,628,313 RGD:9681732
G MED24 mediator complex subunit 24 JBrowse link 17 40,019,104 40,054,408 RGD:9681732
G MED25 mediator complex subunit 25 JBrowse link 19 49,818,279 49,840,384 RGD:9681732
G MED26 mediator complex subunit 26 JBrowse link 19 16,574,919 16,628,204 RGD:9681732
G MED27 mediator complex subunit 27 JBrowse link 9 131,860,110 132,079,867 RGD:9681732
G MED28 mediator complex subunit 28 JBrowse link 4 17,614,641 17,634,105 RGD:9681732
G MED29 mediator complex subunit 29 JBrowse link 19 39,391,378 39,400,641 RGD:9681732
G MED30 mediator complex subunit 30 JBrowse link 8 117,520,713 117,540,262 RGD:9681732
G MED31 mediator complex subunit 31 JBrowse link 17 6,643,311 6,651,605 RGD:9681732
G MED4 mediator complex subunit 4 JBrowse link 13 48,075,724 48,095,141 RGD:9681732
G MED6 mediator complex subunit 6 JBrowse link 14 70,583,221 70,600,690 RGD:9681732
G MED7 mediator complex subunit 7 JBrowse link 5 157,137,424 157,142,865 RGD:9681732
G MED8 mediator complex subunit 8 JBrowse link 1 43,383,917 43,389,800 RGD:9681732
G MED9 mediator complex subunit 9 JBrowse link 17 17,477,000 17,493,221 RGD:9681732
G POLR2A RNA polymerase II subunit A JBrowse link 17 7,484,366 7,514,616 RGD:9588243
G POLR2B RNA polymerase II subunit B JBrowse link 4 56,978,640 57,031,162 RGD:9588243
G POLR2C RNA polymerase II subunit C JBrowse link 16 57,462,679 57,472,009 RGD:9588243
G POLR2D RNA polymerase II subunit D JBrowse link 2 127,843,553 127,858,155 RGD:9588243
G POLR2E RNA polymerase II subunit E JBrowse link 19 1,086,574 1,095,392 RGD:9588243
G POLR2F RNA polymerase II subunit F JBrowse link 22 37,953,663 38,041,915 RGD:9588243
G POLR2G RNA polymerase II subunit G JBrowse link 11 62,761,580 62,766,710 RGD:9588243
G POLR2H RNA polymerase II subunit H JBrowse link 3 184,361,710 184,368,595 RGD:9588243
G POLR2I RNA polymerase II subunit I JBrowse link 19 36,113,709 36,114,875 RGD:9588243
G POLR2J RNA polymerase II subunit J JBrowse link 7 102,473,094 102,478,934 RGD:9588243
G POLR2K RNA polymerase II subunit K JBrowse link 8 100,150,636 100,154,003 RGD:9588243
G POLR2L RNA polymerase II subunit L JBrowse link 11 839,721 842,529 RGD:9588243
G RPAP2 RNA polymerase II associated protein 2 JBrowse link 1 92,299,050 92,402,056 RGD:9681737
RGD:9681738
G SSU72 SSU72 homolog, RNA polymerase II CTD phosphatase JBrowse link 1 1,541,673 1,574,863 RGD:9681737
RGD:9681738
3'-end pre-mRNA processing pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 11 57,657,744 57,661,865 RGD:9681741
RGD:9681742
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,393,231 144,409,400 RGD:9681741
RGD:9681742
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,121,969 92,172,145 RGD:9681741
RGD:9681742
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2 9,423,537 9,473,110 RGD:9681741
RGD:9681742
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 99,438,912 99,457,377 RGD:9681741
RGD:9681742
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,239,568 69,274,358 RGD:9681741
RGD:9681742
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 61,402,648 61,429,992 RGD:9681741
RGD:9681742
G CSTF1 cleavage stimulation factor subunit 1 JBrowse link 20 56,392,371 56,406,362 RGD:9681741
RGD:9681742
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,820,359 100,843,534 RGD:9681741
RGD:9681742
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 10 51,695,486 51,699,595 RGD:9681741
RGD:9681742
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 33,084,584 33,161,491 RGD:9681741
RGD:9681742
G DXO decapping exoribonuclease JBrowse link 6 31,969,811 31,972,290 RGD:9681741
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 53,377,641 53,462,583 RGD:9681741
RGD:9681742
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:9681741
RGD:9681742
G PABPN1 poly(A) binding protein nuclear 1 JBrowse link 14 23,320,188 23,326,185 RGD:9681742
G PAPOLA poly(A) polymerase alpha JBrowse link 14 96,502,376 96,567,116 RGD:9681742
G PAPOLB poly(A) polymerase beta JBrowse link 7 4,857,738 4,862,030 RGD:9681742
G PAPOLG poly(A) polymerase gamma JBrowse link 2 60,756,248 60,802,086 RGD:9681742
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 11 83,157,095 83,187,451 RGD:9681741
RGD:9681742
G SYMPK symplekin JBrowse link 19 45,815,410 45,863,167 RGD:9681741
RGD:9681742
G WDR33 WD repeat domain 33 JBrowse link 2 127,701,027 127,811,187 RGD:9681741
RGD:9681742
G XRN2 5'-3' exoribonuclease 2 JBrowse link 20 21,303,313 21,389,825 RGD:9681741
5'-end pre-mRNA capping pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:9684851
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:9684851
G RAMAC RNA guanine-7 methyltransferase activating subunit JBrowse link 15 82,986,210 82,991,057 RGD:9684851
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 6 88,609,897 88,963,618 RGD:9684851
G RNMT RNA guanine-7 methyltransferase JBrowse link 18 13,726,645 13,764,556 RGD:9684851
RNA polymerase II transcription elongation pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AFF1 AF4/FMR2 family member 1 JBrowse link 4 86,934,606 87,141,054 RGD:9681740
G AFF4 AF4/FMR2 family member 4 JBrowse link 5 132,875,381 132,963,655 RGD:9681740
G CCNK cyclin K JBrowse link 14 99,481,409 99,512,440 RGD:9681735
G CCNT1 cyclin T1 JBrowse link 12 48,688,458 48,716,707 RGD:9681735
G CCNT2 cyclin T2 JBrowse link 2 134,918,810 134,959,342 RGD:9681735
G CDC73 cell division cycle 73 JBrowse link 1 193,122,031 193,254,815 RGD:9588246
G CDK9 cyclin dependent kinase 9 JBrowse link 9 127,786,034 127,790,792 RGD:9681735
G CTR9 CTR9 homolog, Paf1/RNA polymerase II complex component JBrowse link 11 10,751,246 10,779,746 RGD:9588246
G EAF1 ELL associated factor 1 JBrowse link 3 15,427,598 15,442,613 RGD:9681740
G EAF2 ELL associated factor 2 JBrowse link 3 121,835,180 121,886,526 RGD:9681740
G ELL elongation factor for RNA polymerase II JBrowse link 19 18,442,663 18,522,070 RGD:9681740
G ELL2 elongation factor for RNA polymerase II 2 JBrowse link 5 95,885,098 95,961,962 RGD:9681740
G ELL3 elongation factor for RNA polymerase II 3 JBrowse link 15 43,772,620 43,776,966 RGD:9681740
G GTF2F1 general transcription factor IIF subunit 1 JBrowse link 19 6,379,569 6,393,186 RGD:9681735
G GTF2F2 general transcription factor IIF subunit 2 JBrowse link 13 45,119,830 45,284,893 RGD:9681735
G LEO1 LEO1 homolog, Paf1/RNA polymerase II complex component JBrowse link 15 51,938,024 51,971,801 RGD:9588246
G MLLT1 MLLT1 super elongation complex subunit JBrowse link 19 6,210,381 6,279,975 RGD:9681740
G MLLT3 MLLT3 super elongation complex subunit JBrowse link 9 20,341,669 20,622,499 RGD:9681740
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:9684851
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:9684851
G NELFA negative elongation factor complex member A JBrowse link 4 1,982,717 2,041,914 RGD:9681735
G NELFB negative elongation factor complex member B JBrowse link 9 137,255,327 137,273,542 RGD:9681735
G NELFCD negative elongation factor complex member C/D JBrowse link 20 58,981,252 58,995,133 RGD:9681735
G NELFE negative elongation factor complex member E JBrowse link 6 31,952,087 31,959,043 RGD:9681735
G PAF1 PAF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 19 39,385,629 39,391,106 RGD:9588246
G RNGTT RNA guanylyltransferase and 5'-phosphatase JBrowse link 6 88,609,897 88,963,618 RGD:9684851
G RTF1 RTF1 homolog, Paf1/RNA polymerase II complex component JBrowse link 15 41,417,104 41,483,563 RGD:9588246
G SSRP1 structure specific recognition protein 1 JBrowse link 11 57,325,986 57,335,892 RGD:9681735
G SUPT16H SPT16 homolog, facilitates chromatin remodeling subunit JBrowse link 14 21,351,472 21,384,019 RGD:9681735
G SUPT4H1 SPT4 homolog, DSIF elongation factor subunit JBrowse link 17 58,345,178 58,352,201 RGD:9681735
G SUPT5H SPT5 homolog, DSIF elongation factor subunit JBrowse link 19 39,445,546 39,476,670 RGD:9681735
G TCEA1 transcription elongation factor A1 JBrowse link 8 53,966,556 54,022,448 RGD:9681735
G TCEA2 transcription elongation factor A2 JBrowse link 20 64,042,350 64,072,347 RGD:9681735
G TCEA3 transcription elongation factor A3 JBrowse link 1 23,380,909 23,424,776 RGD:9681735
G WDR61 WD repeat domain 61 JBrowse link 15 78,283,233 78,299,703 RGD:9588246
RNA polymerase II transcription initiation pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ATXN7 ataxin 7 JBrowse link 3 63,864,557 64,003,462 RGD:9681728
G ATXN7L3 ataxin 7 like 3 JBrowse link 17 44,191,805 44,198,161 RGD:9681728
G CCNH cyclin H JBrowse link 5 87,311,471 87,413,033 RGD:9681726
G CDK7 cyclin dependent kinase 7 JBrowse link 5 69,234,795 69,277,430 RGD:9681726
G DR1 down-regulator of transcription 1 JBrowse link 1 93,345,907 93,369,493 RGD:9681728
G ENY2 ENY2 transcription and export complex 2 subunit JBrowse link 8 109,334,347 109,345,954 RGD:9681728
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit JBrowse link 19 45,349,837 45,370,647 RGD:9681726
G ERCC3 ERCC excision repair 3, TFIIH core complex helicase subunit JBrowse link 2 127,257,290 127,294,166 RGD:9681726
G ERCC5 ERCC excision repair 5, endonuclease JBrowse link 13 102,846,032 102,875,995 RGD:9681726
G GTF2A1 general transcription factor IIA subunit 1 JBrowse link 14 81,175,452 81,221,390 RGD:9681721
G GTF2A2 general transcription factor IIA subunit 2 JBrowse link 15 59,638,062 59,657,515 RGD:9681721
G GTF2B general transcription factor IIB JBrowse link 1 88,852,633 88,891,944 RGD:9681721
G GTF2E1 general transcription factor IIE subunit 1 JBrowse link 3 120,742,744 120,783,069 RGD:9681721
G GTF2E2 general transcription factor IIE subunit 2 JBrowse link 8 30,578,318 30,658,241 RGD:9681721
G GTF2F1 general transcription factor IIF subunit 1 JBrowse link 19 6,379,569 6,393,186 RGD:9681721
G GTF2F2 general transcription factor IIF subunit 2 JBrowse link 13 45,119,830 45,284,893 RGD:9681721
G GTF2H1 general transcription factor IIH subunit 1 JBrowse link 11 18,322,269 18,367,045 RGD:9681726
G GTF2H2 general transcription factor IIH subunit 2 JBrowse link 5 71,035,124 71,109,113 RGD:9681726
G GTF2H3 general transcription factor IIH subunit 3 JBrowse link 12 123,633,739 123,662,604 RGD:9681726
G GTF2H4 general transcription factor IIH subunit 4 JBrowse link 6 30,908,207 30,914,106 RGD:9681726
G GTF2H5 general transcription factor IIH subunit 5 JBrowse link 6 158,168,316 158,199,344 RGD:9681726
G HCFC2 host cell factor C2 JBrowse link 12 104,064,526 104,108,954 RGD:9681728
G KAT14 lysine acetyltransferase 14 JBrowse link 20 18,142,224 18,188,387 RGD:9681728
G KAT2A lysine acetyltransferase 2A JBrowse link 17 42,113,111 42,121,367 RGD:9681728
G KAT2B lysine acetyltransferase 2B JBrowse link 3 20,040,407 20,154,404 RGD:9681728
G MBIP MAP3K12 binding inhibitory protein 1 JBrowse link 14 36,298,558 36,320,676 RGD:9681728
G MNAT1 MNAT1 component of CDK activating kinase JBrowse link 14 60,734,735 60,969,965 RGD:9681726
G POLE3 DNA polymerase epsilon 3, accessory subunit JBrowse link 9 113,407,235 113,410,749 RGD:9681728
G SGF29 SAGA complex associated factor 29 JBrowse link 16 28,553,915 28,591,790 RGD:9681728
G SUPT20H SPT20 homolog, SAGA complex component JBrowse link 13 37,009,312 37,059,714 RGD:9681728
G SUPT3H SPT3 homolog, SAGA and STAGA complex component JBrowse link 6 44,809,057 45,378,051 RGD:9681728
G SUPT7L SPT7 like, STAGA complex subunit gamma JBrowse link 2 27,642,568 27,663,840 RGD:9681728
G TADA1 transcriptional adaptor 1 JBrowse link 1 166,856,510 166,876,264 RGD:9681728
G TADA2A transcriptional adaptor 2A JBrowse link 17 37,406,877 37,479,725 RGD:9681728
G TADA2B transcriptional adaptor 2B JBrowse link 4 7,043,372 7,057,952 RGD:9681728
G TADA3 transcriptional adaptor 3 JBrowse link 3 9,779,964 9,793,011 RGD:9681728
G TAF1 TATA-box binding protein associated factor 1 JBrowse link X 71,366,220 71,530,525 RGD:9681723
G TAF10 TATA-box binding protein associated factor 10 JBrowse link 11 6,606,294 6,612,216 RGD:9681723
RGD:9681728
G TAF11 TATA-box binding protein associated factor 11 JBrowse link 6 34,877,462 34,888,071 RGD:9681723
G TAF12 TATA-box binding protein associated factor 12 JBrowse link 1 28,602,850 28,648,707 RGD:9681723
RGD:9681728
G TAF13 TATA-box binding protein associated factor 13 JBrowse link 1 109,064,140 109,076,003 RGD:9681723
G TAF15 TATA-box binding protein associated factor 15 JBrowse link 17 35,809,484 35,847,242 RGD:9681723
G TAF2 TATA-box binding protein associated factor 2 JBrowse link 8 119,730,773 119,832,858 RGD:9681723
G TAF3 TATA-box binding protein associated factor 3 JBrowse link 10 7,818,505 8,016,631 RGD:9681723
G TAF4 TATA-box binding protein associated factor 4 JBrowse link 20 61,974,798 62,065,810 RGD:9681723
G TAF5 TATA-box binding protein associated factor 5 JBrowse link 10 103,367,976 103,389,065 RGD:9681723
G TAF5L TATA-box binding protein associated factor 5 like JBrowse link 1 229,593,111 229,626,122 RGD:9681728
G TAF6 TATA-box binding protein associated factor 6 JBrowse link 7 100,107,070 100,127,208 RGD:9681723
G TAF6L TATA-box binding protein associated factor 6 like JBrowse link 11 62,771,396 62,787,342 RGD:9681728
G TAF7 TATA-box binding protein associated factor 7 JBrowse link 5 141,318,490 141,320,784 RGD:9681723
G TAF8 TATA-box binding protein associated factor 8 JBrowse link 6 42,050,522 42,083,278 RGD:9681723
G TAF9 TATA-box binding protein associated factor 9 JBrowse link 5 69,364,743 69,370,013 RGD:9681723
RGD:9681728
G TBP TATA-box binding protein JBrowse link 6 170,554,333 170,572,870 RGD:9681721
RGD:9681723
G TRRAP transformation/transcription domain associated protein JBrowse link 7 98,878,490 99,013,243 RGD:9681728
G USP22 ubiquitin specific peptidase 22 JBrowse link 17 20,999,596 21,043,409 RGD:9681728
G WDR5 WD repeat domain 5 JBrowse link 9 134,135,382 134,159,972 RGD:9681728
G YEATS2 YEATS domain containing 2 JBrowse link 3 183,697,797 183,812,625 RGD:9681728
G ZZZ3 zinc finger ZZ-type containing 3 JBrowse link 1 77,561,526 77,683,440 RGD:9681728
RNA polymerase II transcription termination pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G CLP1 cleavage factor polyribonucleotide kinase subunit 1 JBrowse link 11 57,657,744 57,661,865 RGD:9681741
RGD:9681742
G CPSF1 cleavage and polyadenylation specific factor 1 JBrowse link 8 144,393,231 144,409,400 RGD:9681741
RGD:9681742
G CPSF2 cleavage and polyadenylation specific factor 2 JBrowse link 14 92,121,969 92,172,145 RGD:9681741
RGD:9681742
G CPSF3 cleavage and polyadenylation specific factor 3 JBrowse link 2 9,423,537 9,473,110 RGD:9681741
RGD:9681742
G CPSF4 cleavage and polyadenylation specific factor 4 JBrowse link 7 99,438,912 99,457,377 RGD:9681741
RGD:9681742
G CPSF6 cleavage and polyadenylation specific factor 6 JBrowse link 12 69,239,568 69,274,358 RGD:9681741
RGD:9681742
G CPSF7 cleavage and polyadenylation specific factor 7 JBrowse link 11 61,402,648 61,429,992 RGD:9681741
RGD:9681742
G CSTF1 cleavage stimulation factor subunit 1 JBrowse link 20 56,392,371 56,406,362 RGD:9681741
RGD:9681742
G CSTF2 cleavage stimulation factor subunit 2 JBrowse link X 100,820,359 100,843,534 RGD:9681741
RGD:9681742
G CSTF2T cleavage stimulation factor subunit 2 tau variant JBrowse link 10 51,695,486 51,699,595 RGD:9681741
RGD:9681742
G CSTF3 cleavage stimulation factor subunit 3 JBrowse link 11 33,084,584 33,161,491 RGD:9681741
RGD:9681742
G DXO decapping exoribonuclease JBrowse link 6 31,969,811 31,972,290 RGD:9681741
G FIP1L1 factor interacting with PAPOLA and CPSF1 JBrowse link 4 53,377,641 53,462,583 RGD:9681741
RGD:9681742
G NUDT21 nudix hydrolase 21 JBrowse link 16 56,429,133 56,451,332 RGD:9681741
RGD:9681742
G PCF11 PCF11 cleavage and polyadenylation factor subunit JBrowse link 11 83,157,095 83,187,451 RGD:9681741
RGD:9681742
G SYMPK symplekin JBrowse link 19 45,815,410 45,863,167 RGD:9681741
RGD:9681742
G WDR33 WD repeat domain 33 JBrowse link 2 127,701,027 127,811,187 RGD:9681741
RGD:9681742
G XRN2 5'-3' exoribonuclease 2 JBrowse link 20 21,303,313 21,389,825 RGD:9681741
spliceosome pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AAR2 AAR2 splicing factor JBrowse link 20 36,236,136 36,256,941 RGD:9686090
G ACIN1 apoptotic chromatin condensation inducer 1 JBrowse link 14 23,058,564 23,095,614 RGD:6907045
G AQR aquarius intron-binding spliceosomal factor JBrowse link 15 34,851,782 34,969,742 RGD:6907045
RGD:9686094
G BCAS2 BCAS2 pre-mRNA processing factor JBrowse link 1 114,567,557 114,581,615 RGD:6907045
RGD:9686094
G BUD31 BUD31 homolog JBrowse link 7 99,408,641 99,419,616 RGD:6907045
RGD:9686094
G CCDC12 coiled-coil domain containing 12 JBrowse link 3 46,916,310 46,982,083 RGD:6907045
RGD:9686094
G CDC40 cell division cycle 40 JBrowse link 6 110,180,427 110,232,232 RGD:6907045
G CDC5L cell division cycle 5 like JBrowse link 6 44,387,706 44,450,425 RGD:6907045
RGD:9686094
G CHERP calcium homeostasis endoplasmic reticulum protein JBrowse link 19 16,517,894 16,542,437 RGD:6907045
G CRNKL1 crooked neck pre-mRNA splicing factor 1 JBrowse link 20 20,034,361 20,056,046 RGD:6907045
RGD:9686094
G CTNNBL1 catenin beta like 1 JBrowse link 20 37,693,955 37,872,129 RGD:6907045
RGD:9686094
G CWC15 CWC15 spliceosome associated protein homolog JBrowse link 11 94,962,620 94,973,612 RGD:6907045
RGD:9686094
G DDX23 DEAD-box helicase 23 JBrowse link 12 48,829,756 48,852,163 RGD:6907045
RGD:9686089
RGD:9686093
G DDX39B DExD-box helicase 39B JBrowse link 6 31,530,226 31,542,003 RGD:6907045
RGD:9686093
G DDX42 DEAD-box helicase 42 JBrowse link 17 63,773,856 63,819,317 RGD:6907045
RGD:9686091
G DDX46 DEAD-box helicase 46 JBrowse link 5 134,758,778 134,831,121 RGD:6907045
RGD:9686093
G DDX5 DEAD-box helicase 5 JBrowse link 17 64,498,254 64,506,866 RGD:6907045
G DHX15 DEAH-box helicase 15 JBrowse link 4 24,527,475 24,584,554 RGD:6907045
RGD:9686093
G DHX16 DEAH-box helicase 16 JBrowse link 6 30,653,119 30,673,053 RGD:6907045
RGD:9686093
G DHX38 DEAH-box helicase 38 JBrowse link 16 72,093,665 72,112,912 RGD:6907045
RGD:9686093
G DHX8 DEAH-box helicase 8 JBrowse link 17 43,483,865 43,544,799 RGD:6907045
RGD:9686093
G EFTUD2 elongation factor Tu GTP binding domain containing 2 JBrowse link 17 44,849,948 44,899,625 RGD:6907045
RGD:9686093
RGD:9686090
G EIF4A3 eukaryotic translation initiation factor 4A3 JBrowse link 17 80,134,369 80,147,128 RGD:6907045
RGD:9686404
G HNRNPA0 heterogeneous nuclear ribonucleoprotein A0 JBrowse link 5 137,745,651 137,754,363 RGD:9686091
G HNRNPA1 heterogeneous nuclear ribonucleoprotein A1 JBrowse link 12 54,280,726 54,287,087 RGD:6907045
RGD:9686091
RGD:9686089
G HNRNPA1L2 heterogeneous nuclear ribonucleoprotein A1 like 2 JBrowse link 13 52,617,525 52,643,796 RGD:6907045
G HNRNPA2B1 heterogeneous nuclear ribonucleoprotein A2/B1 JBrowse link 7 26,189,920 26,200,775 RGD:9686091
G HNRNPA3 heterogeneous nuclear ribonucleoprotein A3 JBrowse link 2 177,212,694 177,223,959 RGD:6907045
RGD:9686091
RGD:9686089
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B JBrowse link 5 178,204,533 178,211,163 RGD:9686091
G HNRNPC heterogeneous nuclear ribonucleoprotein C JBrowse link 14 21,209,136 21,269,479 RGD:6907045
RGD:9686091
RGD:9686089
G HNRNPD heterogeneous nuclear ribonucleoprotein D JBrowse link 4 82,352,498 82,373,996 RGD:9686091
G HNRNPH1 heterogeneous nuclear ribonucleoprotein H1 JBrowse link 5 179,614,178 179,634,784 RGD:9686091
G HNRNPH3 heterogeneous nuclear ribonucleoprotein H3 JBrowse link 10 68,331,693 68,343,196 RGD:9686091
G HNRNPK heterogeneous nuclear ribonucleoprotein K JBrowse link 9 83,968,083 83,980,782 RGD:6907045
RGD:9686091
RGD:9686089
G HNRNPL heterogeneous nuclear ribonucleoprotein L JBrowse link 19 38,836,370 38,852,347 RGD:9686091
G HNRNPM heterogeneous nuclear ribonucleoprotein M JBrowse link 19 8,444,575 8,489,114 RGD:6907045
RGD:9686091
RGD:9686089
G HNRNPR heterogeneous nuclear ribonucleoprotein R JBrowse link 1 23,304,688 23,344,316 RGD:9686091
G HNRNPU heterogeneous nuclear ribonucleoprotein U JBrowse link 1 244,850,297 244,864,543 RGD:6907045
RGD:9686091
RGD:9686089
G HSPA1A heat shock protein family A (Hsp70) member 1A JBrowse link 6 31,815,543 31,817,942 RGD:6907045
G HSPA1B heat shock protein family A (Hsp70) member 1B JBrowse link 6 31,827,738 31,830,254 RGD:6907045
G HSPA1L heat shock protein family A (Hsp70) member 1 like JBrowse link 6 31,809,619 31,815,283 RGD:6907045
G HSPA2 heat shock protein family A (Hsp70) member 2 JBrowse link 14 64,540,468 64,543,237 RGD:6907045
G HSPA6 heat shock protein family A (Hsp70) member 6 JBrowse link 1 161,524,540 161,526,894 RGD:6907045
G HSPA8 heat shock protein family A (Hsp70) member 8 JBrowse link 11 123,057,489 123,062,366 RGD:6907045
RGD:9686094
G ISY1 ISY1 splicing factor homolog JBrowse link 3 129,127,415 129,161,063 RGD:6907045
RGD:9686094
G LSM2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 6 31,797,396 31,806,966 RGD:6907045
RGD:9686091
RGD:9686089
G LSM3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 3 14,178,817 14,201,122 RGD:6907045
RGD:9686091
RGD:9686089
G LSM4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 18,306,236 18,323,076 RGD:6907045
RGD:9686091
RGD:9686089
G LSM5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 7 32,485,338 32,495,283 RGD:6907045
RGD:9686091
RGD:9686089
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 4 146,175,703 146,204,436 RGD:6907045
RGD:9686091
RGD:9686089
G LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated JBrowse link 19 2,321,521 2,328,630 RGD:6907045
RGD:9686091
RGD:9686089
G LSM8 LSM8 homolog, U6 small nuclear RNA associated JBrowse link 7 118,184,164 118,204,035 RGD:6907045
RGD:9686091
RGD:9686089
G MAGOH mago homolog, exon junction complex subunit JBrowse link 1 53,226,900 53,238,518 RGD:6907045
G MAGOHB mago homolog B, exon junction complex subunit JBrowse link 12 10,604,190 10,613,609 RGD:6907045
RGD:9686404
G MBNL1 muscleblind like splicing regulator 1 JBrowse link 3 152,243,632 152,465,780 RGD:9686382
G NCBP1 nuclear cap binding protein subunit 1 JBrowse link 9 97,633,423 97,673,748 RGD:6907045
G NCBP2 nuclear cap binding protein subunit 2 JBrowse link 3 196,932,729 196,942,593 RGD:6907045
G PCBP1 poly(rC) binding protein 1 JBrowse link 2 70,087,477 70,089,203 RGD:6907045
G PHF5A PHD finger protein 5A JBrowse link 22 41,459,717 41,468,692 RGD:6907045
G PLRG1 pleiotropic regulator 1 JBrowse link 4 154,534,997 154,550,433 RGD:6907045
RGD:9686094
G PNN pinin, desmosome associated protein JBrowse link 14 39,175,254 39,183,220 RGD:9686404
G PPIE peptidylprolyl isomerase E JBrowse link 1 39,738,845 39,765,698 RGD:6907045
RGD:9686376
RGD:9686094
G PPIG peptidylprolyl isomerase G JBrowse link 2 169,584,343 169,641,406 RGD:9686376
G PPIH peptidylprolyl isomerase H JBrowse link 1 42,657,770 42,681,654 RGD:6907045
RGD:9686376
G PPIL1 peptidylprolyl isomerase like 1 JBrowse link 6 36,854,829 36,874,803 RGD:6907045
RGD:9686376
RGD:9686094
G PPIL2 peptidylprolyl isomerase like 2 JBrowse link 22 21,665,984 21,700,015 RGD:9686376
G PPIL3 peptidylprolyl isomerase like 3 JBrowse link 2 200,870,907 200,889,333 RGD:9686376
G PQBP1 polyglutamine binding protein 1 JBrowse link X 48,897,862 48,903,145 RGD:6907045
G PRPF18 pre-mRNA processing factor 18 JBrowse link 10 13,586,811 13,645,344 RGD:6907045
RGD:9686092
G PRPF19 pre-mRNA processing factor 19 JBrowse link 11 60,890,547 60,906,585 RGD:6907045
RGD:9686094
G PRPF3 pre-mRNA processing factor 3 JBrowse link 1 150,321,468 150,353,233 RGD:6907045
RGD:9686089
G PRPF31 pre-mRNA processing factor 31 JBrowse link 19 54,115,706 54,131,719 RGD:6907045
RGD:9686089
G PRPF38A pre-mRNA processing factor 38A JBrowse link 1 52,404,564 52,420,836 RGD:6907045
G PRPF38B pre-mRNA processing factor 38B JBrowse link 1 108,692,310 108,702,928 RGD:6907045
G PRPF4 pre-mRNA processing factor 4 JBrowse link 9 113,275,634 113,292,905 RGD:6907045
RGD:9686089
G PRPF40A pre-mRNA processing factor 40 homolog A JBrowse link 2 152,651,593 152,718,019 RGD:6907045
G PRPF40B pre-mRNA processing factor 40 homolog B JBrowse link 12 49,622,717 49,645,129 RGD:6907045
G PRPF6 pre-mRNA processing factor 6 JBrowse link 20 63,981,132 64,033,100 RGD:6907045
RGD:9686089
G PRPF8 pre-mRNA processing factor 8 JBrowse link 17 1,650,629 1,684,880 RGD:6907045
RGD:9686090
G PTBP1 polypyrimidine tract binding protein 1 JBrowse link 19 797,452 812,316 RGD:9686381
G PTBP2 polypyrimidine tract binding protein 2 JBrowse link 1 96,721,605 96,823,739 RGD:9686382
G PUF60 poly(U) binding splicing factor 60 JBrowse link 8 143,816,344 143,830,041 RGD:6907045
G QKI QKI, KH domain containing RNA binding JBrowse link 6 163,414,486 163,578,592 RGD:9686381
G RBM17 RNA binding motif protein 17 JBrowse link 10 6,089,034 6,117,459 RGD:6907045
G RBM22 RNA binding motif protein 22 JBrowse link 5 150,690,792 150,701,089 RGD:6907045
RGD:9686094
G RBM25 RNA binding motif protein 25 JBrowse link 14 73,058,532 73,123,899 RGD:6907045
G RBM8A RNA binding motif protein 8A JBrowse link 1 145,921,556 145,927,484 RGD:6907045
RGD:9686404
G RBMX RNA binding motif protein X-linked JBrowse link X 136,869,192 136,880,780 RGD:6907045
RGD:9686091
RGD:9686089
G RBMXL1 RBMX like 1 JBrowse link 1 88,979,456 88,992,960 RGD:6907045
G RNPS1 RNA binding protein with serine rich domain 1 JBrowse link 16 2,253,116 2,268,126 RGD:9686404
G SART1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP JBrowse link 11 65,961,727 65,980,137 RGD:6907045
G SART3 spliceosome associated factor 3, U4/U6 recycling protein JBrowse link 12 108,522,214 108,561,173 RGD:9686090
G SF1 splicing factor 1 JBrowse link 11 64,764,604 64,778,844 RGD:9686089
G SF3A1 splicing factor 3a subunit 1 JBrowse link 22 30,331,988 30,356,894 RGD:6907045
RGD:9686091
G SF3A2 splicing factor 3a subunit 2 JBrowse link 19 2,236,824 2,248,655 RGD:6907045
RGD:9686091
G SF3A3 splicing factor 3a subunit 3 JBrowse link 1 37,956,975 37,990,022 RGD:6907045
RGD:9686091
G SF3B1 splicing factor 3b subunit 1 JBrowse link 2 197,389,784 197,435,093 RGD:6907045
RGD:9686091
G SF3B2 splicing factor 3b subunit 2 JBrowse link 11 66,052,361 66,069,308 RGD:6907045
RGD:9686091
G SF3B3 splicing factor 3b subunit 3 JBrowse link 16 70,523,816 70,577,668 RGD:6907045
RGD:9686091
G SF3B4 splicing factor 3b subunit 4 JBrowse link 1 149,923,317 149,927,803 RGD:6907045
RGD:9686091
G SF3B5 splicing factor 3b subunit 5 JBrowse link 6 144,094,884 144,095,573 RGD:6907045
RGD:9686091
G SF3B6 splicing factor 3b subunit 6 JBrowse link 2 24,067,586 24,076,326 RGD:6907045
RGD:9686091
G SLU7 SLU7 homolog, splicing factor JBrowse link 5 160,401,641 160,419,081 RGD:6907045
RGD:9686092
G SMNDC1 survival motor neuron domain containing 1 JBrowse link 10 110,290,730 110,304,969 RGD:6907045
G SNRNP200 small nuclear ribonucleoprotein U5 subunit 200 JBrowse link 2 96,274,338 96,305,546 RGD:6907045
RGD:9686093
RGD:9686090
G SNRNP27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 JBrowse link 2 69,893,956 69,905,236 RGD:6907045
G SNRNP40 small nuclear ribonucleoprotein U5 subunit 40 JBrowse link 1 31,259,568 31,296,788 RGD:6907045
G SNRNP70 small nuclear ribonucleoprotein U1 subunit 70 JBrowse link 19 49,085,451 49,108,606 RGD:6907045
RGD:9686090
G SNRPA small nuclear ribonucleoprotein polypeptide A JBrowse link 19 40,751,203 40,765,389 RGD:6907045
RGD:9686090
G SNRPA1 small nuclear ribonucleoprotein polypeptide A' JBrowse link 15 101,281,510 101,295,248 RGD:6907045
RGD:9686091
G SNRPB small nuclear ribonucleoprotein polypeptides B and B1 JBrowse link 20 2,461,642 2,470,789 RGD:6907045
RGD:9686091
RGD:9686089
G SNRPB2 small nuclear ribonucleoprotein polypeptide B2 JBrowse link 20 16,730,026 16,742,564 RGD:6907045
RGD:9686091
G SNRPC small nuclear ribonucleoprotein polypeptide C JBrowse link 6 34,757,094 34,773,857 RGD:6907045
RGD:9686090
G SNRPD1 small nuclear ribonucleoprotein D1 polypeptide JBrowse link 18 21,612,314 21,633,520 RGD:6907045
RGD:9686091
RGD:9686089
G SNRPD2 small nuclear ribonucleoprotein D2 polypeptide JBrowse link 19 45,687,454 45,692,316 RGD:6907045
RGD:9686091
RGD:9686089
G SNRPD3 small nuclear ribonucleoprotein D3 polypeptide JBrowse link 22 24,555,650 24,574,971 RGD:6907045
RGD:9686091
RGD:9686089
G SNRPE small nuclear ribonucleoprotein polypeptide E JBrowse link 1 203,861,599 203,871,152 RGD:6907045
RGD:9686091
RGD:9686089
G SNRPF small nuclear ribonucleoprotein polypeptide F JBrowse link 12 95,858,952 95,867,053 RGD:6907045
RGD:9686091
RGD:9686089
G SNRPG small nuclear ribonucleoprotein polypeptide G JBrowse link 2 70,281,362 70,293,771 RGD:6907045
RGD:9686091
RGD:9686089
G SNU13 small nuclear ribonucleoprotein 13 JBrowse link 22 41,673,933 41,690,492 RGD:6907045
RGD:9686089
G SNW1 SNW domain containing 1 JBrowse link 14 77,717,599 77,761,156 RGD:6907045
RGD:9686094
G SRRM1 serine and arginine repetitive matrix 1 JBrowse link 1 24,643,273 24,673,281 RGD:9686091
RGD:9686404
G SRRM2 serine/arginine repetitive matrix 2 JBrowse link 16 2,750,903 2,771,412 RGD:9686091
G SRRM4 serine/arginine repetitive matrix 4 JBrowse link 12 118,981,541 119,163,051 RGD:9686382
G SRSF1 serine and arginine rich splicing factor 1 JBrowse link 17 58,000,919 58,007,346 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF10 serine and arginine rich splicing factor 10 JBrowse link 1 23,964,347 23,980,370 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF11 serine and arginine rich splicing factor 11 JBrowse link 1 70,205,696 70,253,052 RGD:9686091
G SRSF12 serine and arginine rich splicing factor 12 JBrowse link 6 89,095,957 89,118,071 RGD:9686091
G SRSF2 serine and arginine rich splicing factor 2 JBrowse link 17 76,734,115 76,737,411 RGD:6907045
RGD:9686091
G SRSF3 serine and arginine rich splicing factor 3 JBrowse link 6 36,594,313 36,605,600 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF4 serine and arginine rich splicing factor 4 JBrowse link 1 29,147,743 29,181,900 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF5 serine and arginine rich splicing factor 5 JBrowse link 14 69,767,112 69,772,005 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF6 serine and arginine rich splicing factor 6 JBrowse link 20 43,457,893 43,464,243 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF7 serine and arginine rich splicing factor 7 JBrowse link 2 38,743,599 38,751,494 RGD:6907045
RGD:9686091
RGD:9686089
G SRSF8 serine and arginine rich splicing factor 8 JBrowse link 11 95,066,877 95,071,227 RGD:6907045
G SRSF9 serine and arginine rich splicing factor 9 JBrowse link 12 120,461,672 120,469,748 RGD:6907045
RGD:9686091
RGD:9686089
G SYF2 SYF2 pre-mRNA splicing factor JBrowse link 1 25,222,276 25,232,502 RGD:6907045
RGD:9686094
G SYNCRIP synaptotagmin binding cytoplasmic RNA interacting protein JBrowse link 6 85,607,784 85,643,862 RGD:9686091
G TCERG1 transcription elongation regulator 1 JBrowse link 5 146,447,330 146,511,961 RGD:6907045
G THOC1 THO complex 1 JBrowse link 18 214,348 268,047 RGD:6907045
G THOC2 THO complex 2 JBrowse link X 123,600,563 123,733,054 RGD:6907045
G THOC3 THO complex 3 JBrowse link 5 175,959,531 176,034,905 RGD:6907045
G TIAL1 TIA1 cytotoxic granule associated RNA binding protein like 1 JBrowse link 10 119,573,465 119,598,841 RGD:9686381
G TRA2A transformer 2 alpha homolog JBrowse link 7 23,504,780 23,532,041 RGD:6907045
G TRA2B transformer 2 beta homolog JBrowse link 3 185,914,558 185,938,027 RGD:6907045
G TXNL4A thioredoxin like 4A JBrowse link 18 79,970,813 80,033,936 RGD:6907045
RGD:9686089
G U2AF1 U2 small nuclear RNA auxiliary factor 1 JBrowse link 21 43,092,956 43,108,291 RGD:6907045
RGD:9686089
G U2AF2 U2 small nuclear RNA auxiliary factor 2 JBrowse link 19 55,654,050 55,674,716 RGD:6907045
RGD:9686089
G U2SURP U2 snRNP associated SURP domain containing JBrowse link 3 143,001,570 143,060,725 RGD:6907045
G USP39 ubiquitin specific peptidase 39 JBrowse link 2 85,602,843 85,649,284 RGD:6907045
G WBP11 WW domain binding protein 11 JBrowse link 12 14,784,582 14,803,478 RGD:6907045
G XAB2 XPA binding protein 2 JBrowse link 19 7,619,525 7,629,545 RGD:6907045
RGD:9686094
G ZMAT2 zinc finger matrin-type 2 JBrowse link 5 140,700,447 140,706,686 RGD:6907045

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 5944
    regulatory pathway 3597
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1645
        transcription pathway 1065
          RNA polymerase transcription pathway 387
            eukaryotic RNA polymerase transcription pathway 387
              RNA polymerase II transcription pathway 318
                RNA polymerase II transcription elongation pathway 35
                RNA polymerase II transcription initiation pathway 58
                RNA polymerase II transcription termination pathway 18
                lncRNA maturation pathway + 153
                mRNA maturation pathway + 178
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.