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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagy pathway
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Accession:PW:0000278 term browser browse the term
Definition:Autophagic pathway involves the sequestration of misfolded or long-lived proteins and of defective organelles within double membrane vesicles, delivery of the cargo to lysosomes for degradation and recycling. It is also known as the macroautophagy, or bulk autophagy.
Synonyms:related_synonym: KEGG:04140

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autophagy pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acp2 acid phosphatase 2, lysosomal JBrowse link 3 80,020,346 80,030,365 RGD:4892631
G Atg10 autophagy related 10 JBrowse link 2 19,853,546 20,152,918 RGD:1643329
RGD:4889529
G Atg12 autophagy related 12 JBrowse link 18 40,721,799 40,732,143 RGD:1643329
RGD:6907045
RGD:4889529
RGD:2301217
G Atg13 autophagy related 13 JBrowse link 3 80,580,549 80,614,554 RGD:4889529
G Atg14 autophagy related 14 JBrowse link 15 24,343,418 24,374,776 RGD:4889529
G Atg16l1 autophagy related 16-like 1 JBrowse link 9 94,879,876 94,915,231 RGD:1643329
RGD:4889529
G Atg16l2 autophagy related 16-like 2 JBrowse link 1 166,401,271 166,415,078 RGD:1643329
RGD:4889529
G Atg3 autophagy related 3 JBrowse link 11 60,585,192 60,613,706 RGD:1643237
RGD:6907045
RGD:4889529
RGD:1643329
G Atg4a autophagy related 4A, cysteine peptidase JBrowse link X 112,328,907 112,403,157 RGD:1643329
G Atg4b autophagy related 4B, cysteine peptidase JBrowse link 9 100,888,457 100,920,123 RGD:1643329
RGD:6907045
G Atg4c autophagy related 4C, cysteine peptidase JBrowse link 5 117,861,517 117,932,116 RGD:1643329
RGD:6907045
G Atg4d autophagy related 4D, cysteine peptidase JBrowse link 8 22,291,445 22,301,331 RGD:1643329
RGD:6907045
G Atg5 autophagy related 5 JBrowse link 20 49,301,783 49,393,147 RGD:2301217
RGD:6907045
RGD:4889529
G Atg7 autophagy related 7 JBrowse link 4 146,570,113 146,777,093 RGD:1643329
RGD:1643198
RGD:6907045
RGD:4889529
G Atg9a autophagy related 9A JBrowse link 9 82,382,800 82,393,429 RGD:4889529
G Atg9b autophagy related 9B JBrowse link 4 7,314,369 7,322,095 RGD:4889529
G Becn1 beclin 1 JBrowse link 10 89,209,944 89,225,297 RGD:1643194
RGD:6907045
RGD:4889529
RGD:1643329
G Chmp2b charged multivesicular body protein 2B JBrowse link 11 2,666,405 2,692,213 RGD:4892619
G Chmp3 charged multivesicular body protein 3 JBrowse link 4 99,449,213 99,496,156 RGD:4892619
G Gabarap GABA type A receptor-associated protein JBrowse link 10 56,601,288 56,604,223 RGD:1643329
RGD:6907045
RGD:4890444
G Gabarapl1 GABA type A receptor associated protein like 1 JBrowse link 4 163,293,724 163,302,866 RGD:4890444
RGD:6907045
G Gabarapl2 GABA type A receptor associated protein like 2 JBrowse link 19 44,164,935 44,175,771 RGD:1643329
RGD:6907045
RGD:4890444
G Hgs hepatocyte growth factor-regulated tyrosine kinase substrate JBrowse link 10 109,638,944 109,657,460 RGD:4892619
G Ifna1 interferon, alpha 1 JBrowse link 5 106,951,822 106,952,908 RGD:6907045
G Ifna11 interferon alpha family, gene 11 JBrowse link 5 107,504,741 107,505,783 RGD:6907045
G Ifna2 interferon alpha 2 JBrowse link 5 107,416,117 107,416,695 RGD:6907045
G Ifna4 interferon, alpha 4 JBrowse link 5 106,922,563 106,923,132 RGD:6907045
G Ifna5 interferon, alpha 5 JBrowse link 5 107,039,347 107,039,925 RGD:6907045
G Ifng interferon gamma JBrowse link 7 61,337,383 61,341,419 RGD:6907045
G Ins1 insulin 1 JBrowse link 1 272,799,784 272,800,351 RGD:6907045
G Ins2 insulin 2 JBrowse link 1 215,856,967 215,858,034 RGD:6907045
G Lamp1 lysosomal-associated membrane protein 1 JBrowse link 16 81,689,576 81,714,341 RGD:4892310
RGD:4892631
G Lamp2 lysosomal-associated membrane protein 2 JBrowse link X 124,722,628 124,766,079 RGD:4892310
G LOC100911527 interferon alpha-12-like JBrowse link 5 87,328,395 87,328,946 RGD:6907045
G Map1lc3a microtubule-associated protein 1 light chain 3 alpha JBrowse link 3 150,801,289 150,802,935 RGD:1643198
RGD:4890444
RGD:1643329
G Map1lc3b microtubule-associated protein 1 light chain 3 beta JBrowse link 19 53,635,449 53,643,970 RGD:1643329
RGD:4890444
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 JBrowse link 18 22,964,121 23,047,896 RGD:4889529
RGD:6907045
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 JBrowse link 8 114,300,248 114,350,686 RGD:4889529
RGD:6907045
G Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 2 54,857,688 54,893,404 RGD:6907045
G Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 5 124,568,845 124,642,569 RGD:6907045
G Rab11a RAB11a, member RAS oncogene family JBrowse link 8 70,192,975 70,215,719 RGD:4892310
G Rab33b RAB33B, member RAS oncogene family JBrowse link 2 140,541,619 140,552,220 RGD:4892310
G Rab5a RAB5A, member RAS oncogene family JBrowse link 9 5,910 6,065 RGD:4892310
G Rab7a RAB7A, member RAS oncogene family JBrowse link 4 119,910,461 119,963,065 RGD:4892310
G Rb1cc1 RB1-inducible coiled-coil 1 JBrowse link 5 13,033,918 13,097,369 RGD:4889529
G Rubcn rubicon autophagy regulator JBrowse link 11 71,150,506 71,199,254 RGD:4889529
G Snf8 SNF8 subunit of ESCRT-II JBrowse link 10 83,856,331 83,868,621 RGD:4892619
G Tsg101 tumor susceptibility 101 JBrowse link 1 102,941,151 102,971,017 RGD:4892619
G Ulk1 unc-51 like autophagy activating kinase 1 JBrowse link 12 51,908,105 51,934,704 RGD:1643329
RGD:6907045
RGD:4889529
G Ulk2 unc-51 like autophagy activating kinase 2 JBrowse link 10 48,050,079 48,129,377 RGD:4889529
RGD:6907045
G Ulk3 unc-51 like kinase 3 JBrowse link 8 62,368,548 62,375,229 RGD:6907045
G Uvrag UV radiation resistance associated JBrowse link 1 163,844,804 164,101,568 RGD:4889529
G Vamp3 vesicle-associated membrane protein 3 JBrowse link 5 168,126,157 168,136,628 RGD:4892310
G Vamp7 vesicle-associated membrane protein 7 JBrowse link 12 18,996,566 19,033,714 RGD:4892310
G Vps4a vacuolar protein sorting 4 homolog A JBrowse link 19 39,230,050 39,243,298 RGD:4892619

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6016
    regulatory pathway 3823
      cell death pathway 238
        programmed cell death pathway 238
          non-apoptotic cell death pathway 86
            cellular autophagy pathway 86
              autophagy pathway 55
                altered autophagy pathway 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.