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ONTOLOGY REPORT - ANNOTATIONS


Term:autophagy pathway
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Accession:PW:0000278 term browser browse the term
Definition:Autophagic pathway involves the sequestration of misfolded or long-lived proteins and of defective organelles within double membrane vesicles, delivery of the cargo to lysosomes for degradation and recycling. It is also known as the macroautophagy, or bulk autophagy.
Synonyms:related_synonym: KEGG:04140

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autophagy pathway term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G ACP2 acid phosphatase 2, lysosomal JBrowse link 2 15,334,015 15,342,531 RGD:9068941
G ATG10 autophagy related 10 JBrowse link 2 90,436,795 90,665,383 RGD:9068941
G ATG12 autophagy related 12 JBrowse link 2 119,948,443 119,965,702 RGD:9068941
G ATG13 autophagy related 13 JBrowse link 2 15,856,859 15,916,122 RGD:9068941
G ATG14 autophagy related 14 JBrowse link 1 184,701,020 184,743,752 RGD:9068941
G ATG16L1 autophagy related 16 like 1 JBrowse link 15 133,651,294 133,693,472 RGD:9068941
G ATG16L2 autophagy related 16 like 2 JBrowse link 9 7,346,973 7,360,189 RGD:9068941
G ATG3 autophagy related 3 JBrowse link 13 147,279,110 147,309,597 RGD:9068941
G ATG4A autophagy related 4A cysteine peptidase JBrowse link X 88,545,924 88,633,328 RGD:9068941
G ATG4B autophagy related 4B cysteine peptidase JBrowse link 15 140,223,903 140,245,590 RGD:9068941
G ATG4C autophagy related 4C cysteine peptidase JBrowse link 6 149,560,318 149,691,959 RGD:9068941
G ATG4D autophagy related 4D cysteine peptidase JBrowse link 2 69,320,313 69,328,522 RGD:9068941
G ATG5 autophagy related 5 JBrowse link 1 72,343,950 72,520,402 RGD:9068941
G ATG7 autophagy related 7 JBrowse link 13 67,301,756 67,699,141 RGD:9068941
G ATG9A autophagy related 9A JBrowse link 15 121,254,355 121,265,564 RGD:9068941
G ATG9B autophagy related 9B JBrowse link 18 6,200,246 6,208,988 RGD:9068941
G BECN1 beclin 1 JBrowse link 12 20,041,914 20,054,249 RGD:9068941
G CHMP2B charged multivesicular body protein 2B JBrowse link 13 168,534,950 168,569,574 RGD:9068941
G CHMP3 charged multivesicular body protein 3 JBrowse link 3 58,206,921 58,279,252 RGD:9068941
G GABARAP GABA type A receptor-associated protein JBrowse link 12 52,596,130 52,598,166 RGD:9068941
G GABARAPL1 GABA type A receptor associated protein like 1 JBrowse link 5 61,758,127 61,767,427 RGD:9068941
G GABARAPL2 GABA type A receptor associated protein like 2 JBrowse link 6 12,122,219 12,132,986 RGD:9068941
G HGS hepatocyte growth factor-regulated tyrosine kinase substrate JBrowse link 12 1,207,036 1,219,750 RGD:9068941
G IFN-ALPHA-15 interferon-alpha-15 JBrowse link 1 201,694,271 201,694,837 RGD:9068941
G IFNA1 interferon, alpha 1 JBrowse link 1 201,515,835 201,516,477 RGD:9068941
G IFNG interferon gamma JBrowse link 5 32,477,906 32,482,670 RGD:9068941
G INS insulin JBrowse link 2 1,496,842 1,498,052 RGD:9068941
G LAMP1 lysosomal associated membrane protein 1 JBrowse link 11 78,600,818 78,617,587 RGD:9068941
G LAMP2 lysosomal associated membrane protein 2 JBrowse link X 98,586,718 98,623,939 RGD:9068941
G MAP1LC3A microtubule associated protein 1 light chain 3 alpha JBrowse link 17 37,957,830 37,959,505 RGD:9068941
G MAP1LC3B microtubule associated protein 1 light chain 3 beta JBrowse link 6 1,919,879 1,941,069 RGD:9068941
G MAP1LC3C microtubule associated protein 1 light chain 3 gamma JBrowse link 10 15,371,182 15,379,067 RGD:9068941
G PIK3C3 phosphatidylinositol 3-kinase catalytic subunit type 3 JBrowse link 6 125,890,598 126,038,753 RGD:9068941
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 JBrowse link 13 1,730,988 1,815,555 RGD:9068941
G PRKAA1 protein kinase AMP-activated catalytic subunit alpha 1 JBrowse link 16 25,745,902 25,783,524 RGD:9068941
G PRKAA2 protein kinase AMP-activated catalytic subunit alpha 2 JBrowse link 6 155,683,392 155,754,283 RGD:9068941
G RAB11A RAB11A, member RAS oncogene family JBrowse link 1 163,858,254 163,887,741 RGD:9068941
G RAB33B RAB33B, member RAS oncogene family JBrowse link 8 87,545,106 87,570,545 RGD:9068941
G RAB5A RAB5A, member RAS oncogene family JBrowse link 13 6,905,302 6,940,165 RGD:9068941
G RAB7A RAB7A, member RAS oncogene family JBrowse link 13 71,777,422 71,886,758 RGD:9068941
G RB1CC1 RB1 inducible coiled-coil 1 JBrowse link 4 77,593,204 77,649,551 RGD:9068941
G RUBCN rubicon autophagy regulator JBrowse link 13 134,299,971 134,363,620 RGD:9068941
G SNF8 SNF8 subunit of ESCRT-II JBrowse link 12 25,142,748 25,152,847 RGD:9068941
G TSG101 tumor susceptibility 101 JBrowse link 2 40,673,187 40,720,681 RGD:9068941
G ULK1 unc-51 like autophagy activating kinase 1 JBrowse link 14 23,423,693 23,448,130 RGD:9068941
G ULK2 unc-51 like autophagy activating kinase 2 JBrowse link 12 59,806,904 59,878,398 RGD:9068941
G ULK3 unc-51 like kinase 3 JBrowse link 7 58,699,989 58,707,191 RGD:9068941
G UVRAG UV radiation resistance associated JBrowse link 9 10,088,779 10,370,857 RGD:9068941
G VAMP3 vesicle associated membrane protein 3 JBrowse link 6 68,473,921 68,482,438 RGD:9068941
G VAMP7 vesicle associated membrane protein 7 JBrowse link X 125,863,266 125,917,232 RGD:9068941
G VPS4A vacuolar protein sorting 4 homolog A JBrowse link 6 17,657,792 17,669,560 RGD:9068941

Term paths to the root
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Term Annotations click to browse term
  pathway 5631
    regulatory pathway 3437
      cell death pathway 227
        programmed cell death pathway 227
          non-apoptotic cell death pathway 82
            cellular autophagy pathway 82
              autophagy pathway 51
                altered autophagy pathway 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.