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PATHWAY ONTOLOGY - ANNOTATIONS

The Pathway Ontology (PW), is currently being developed at the Rat Genome Database. For more information about this vocabulary, please see Petri et al. The rat genome database pathway portal. Database (Oxford). 2011 Apr 8;2011:bar010. Print 2011 or contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:spliceosome pathway
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Accession:PW:0001073 term browser browse the term
Definition:The spliceosome is a multimegadalton ribonucleoprotein complex that removes the exons to produce the mature mRNA, including several mature mRNAs from a single RNA transcript via alternative splicing. A complex assembly/disassembly pathway mediates the two chemical steps of a splicing event. lncRNAs are also frequently spliced.
Synonyms:related_synonym: KEGG:03040

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spliceosome pathway term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aar2 AAR2 splicing factor homolog ISO RGD PMID:23592432 RGD:9686090 NCBI chr 2:156,547,560...156,568,972
Ensembl chr 2:156,547,584...156,568,972
JBrowse link
G Acin1 apoptotic chromatin condensation inducer 1 IEA KEGG mmu:03040 NCBI chr14:54,642,161...54,686,965
Ensembl chr14:54,642,161...54,686,931
JBrowse link
G Aqr aquarius IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:114,101,161...114,175,339
Ensembl chr 2:114,101,170...114,187,024
JBrowse link
G Bcas2 breast carcinoma amplified sequence 2 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 3:103,171,655...103,179,163
Ensembl chr 3:103,171,655...103,179,166
JBrowse link
G Bud31 BUD31 homolog ISO RGD PMID:23742842 RGD:9686094 NCBI chr 5:145,140,376...145,148,078
Ensembl chr 5:145,140,362...145,148,078
JBrowse link
G Ccdc12 coiled-coil domain containing 12 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:110,654,308...110,711,593
Ensembl chr 9:110,656,503...110,711,606
JBrowse link
G Cdc40 cell division cycle 40 IEA KEGG mmu:03040 NCBI chr10:40,831,621...40,883,143
Ensembl chr10:40,831,621...40,883,311
JBrowse link
G Cdc5l cell division cycle 5-like (S. pombe) IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr17:45,391,887...45,433,707
Ensembl chr17:45,391,884...45,433,737
JBrowse link
G Cherp calcium homeostasis endoplasmic reticulum protein IEA KEGG mmu:03040 NCBI chr 8:72,460,483...72,475,233
Ensembl chr 8:72,460,489...72,475,226
JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:145,917,482...145,934,700
Ensembl chr 2:145,917,479...145,935,014
JBrowse link
G Ctnnbl1 catenin, beta like 1 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 2:157,737,401...157,891,903
Ensembl chr 2:157,737,401...157,891,614
JBrowse link
G Cwc15 CWC15 spliceosome-associated protein IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:14,500,604...14,510,620
Ensembl chr 9:14,500,617...14,510,577
JBrowse link
G Ddx23 DEAD box helicase 23 IEA
ISO
KEGG PMID:19239890, PMID:23454554 mmu:03040, RGD:9686089, RGD:9686093 NCBI chr15:98,645,379...98,662,928
Ensembl chr15:98,645,134...98,662,894
JBrowse link
G Ddx39b DEAD box helicase 39b IEA
ISO
KEGG PMID:23454554 mmu:03040, RGD:9686093 NCBI chr17:35,241,746...35,253,707
Ensembl chr17:35,241,746...35,253,707
JBrowse link
G Ddx42 DEAD box helicase 42 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:106,216,887...106,249,140
Ensembl chr11:106,216,926...106,249,139
JBrowse link
G Ddx46 DEAD box helicase 46 IEA
ISO
KEGG PMID:23454554 mmu:03040, RGD:9686093 NCBI chr13:55,634,975...55,681,267
Ensembl chr13:55,635,027...55,681,256
JBrowse link
G Ddx5 DEAD box helicase 5 IEA KEGG mmu:03040 NCBI chr11:106,780,355...106,789,185
Ensembl chr11:106,780,355...106,789,185
JBrowse link
G Dhx15 DEAH (Asp-Glu-Ala-His) box polypeptide 15 IEA
ISO
KEGG PMID:23454554 mmu:03040, RGD:9686093 NCBI chr 5:52,150,203...52,190,546
Ensembl chr 5:52,150,203...52,190,514
JBrowse link
G Dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 IEA
ISO
KEGG PMID:23454554 mmu:03040, RGD:9686093 NCBI chr17:35,879,764...35,892,670
Ensembl chr17:35,879,819...35,892,670
JBrowse link
G Dhx38 DEAH (Asp-Glu-Ala-His) box polypeptide 38 IEA
ISO
KEGG PMID:23454554 mmu:03040, RGD:9686093 NCBI chr 8:109,547,999...109,565,861
Ensembl chr 8:109,548,011...109,565,861
JBrowse link
G Dhx8 DEAH (Asp-Glu-Ala-His) box polypeptide 8 IEA
ISO
KEGG PMID:23454554 mmu:03040, RGD:9686093 NCBI chr11:101,732,956...101,767,358
Ensembl chr11:101,732,919...101,767,358
JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 IEA
ISO
KEGG PMID:23454554, PMID:23592432 mmu:03040, RGD:9686093, RGD:9686090 NCBI chr11:102,838,472...102,880,984
Ensembl chr11:102,838,473...102,880,985
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 IEA
ISO
KEGG PMID:15145352 mmu:03040, RGD:9686404 NCBI chr11:119,288,363...119,300,043
Ensembl chr11:119,288,363...119,300,089
JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 IEA KEGG mmu:03040 NCBI chr 6:136,327,539...136,329,983
Ensembl chr 6:136,327,539...136,329,983
JBrowse link
G Gm10146 predicted gene 10146 IEA KEGG mmu:03040 NCBI chr10:78,393,304...78,393,756
Ensembl chr10:78,393,320...78,393,628
JBrowse link
G Gm11847 predicted gene 11847 IEA KEGG mmu:03040 NCBI chr 4:12,232,772...12,238,024
Ensembl chr 4:12,232,833...12,233,951
JBrowse link
G Gm12183 predicted gene 12183 IEA KEGG mmu:03040 NCBI chr11:48,751,609...48,753,876
Ensembl chr11:48,751,867...48,753,714
JBrowse link
G Gm12966 predicted gene 12966 IEA KEGG mmu:03040 NCBI chr 4:129,898,949...129,900,435
Ensembl chr 4:129,899,093...129,899,902
JBrowse link
G Gm4340 predicted gene 4340 IEA KEGG mmu:03040 NCBI chr10:104,194,042...104,196,522
Ensembl chr10:104,194,042...104,196,522
JBrowse link
G Gm5576 predicted pseudogene 5576 IEA KEGG mmu:03040 NCBI chr 6:78,215,878...78,217,169
Ensembl chr 6:78,215,878...78,217,113
JBrowse link
G Gm5616 predicted gene 5616 IEA KEGG mmu:03040 NCBI chr 9:48,450,291...48,451,546
Ensembl chr 9:48,450,400...48,450,783
JBrowse link
G Gm6489 predicted gene 6489 IEA KEGG mmu:03040 NCBI chr 1:31,287,083...31,288,051
Ensembl chr 1:31,286,945...31,287,640
JBrowse link
G Gm8186 predicted gene 8186 IEA KEGG mmu:03040 NCBI chr17:26,098,872...26,099,257
Ensembl chr17:26,098,991...26,099,221
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 ISO RGD PMID:17537823 RGD:9686091 NCBI chr13:58,125,879...58,128,556
Ensembl chr13:58,125,879...58,128,556
JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr15:103,239,943...103,246,698
Ensembl chr15:103,240,432...103,246,692
JBrowse link
G Hnrnpa1l2-ps2 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 IEA KEGG mmu:03040 NCBI chr15:22,713,820...22,714,984
Ensembl chr15:22,713,868...22,714,830
JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 6:51,460,434...51,470,048
Ensembl chr 6:51,460,932...51,469,894
JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 2:75,659,105...75,669,407
Ensembl chr 2:75,659,261...75,669,407
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:51,600,100...51,606,881
Ensembl chr11:51,600,100...51,606,847
JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr14:52,073,377...52,104,039
Ensembl chr14:52,073,377...52,104,028
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:17537823 RGD:9686091 NCBI chr 5:99,955,935...99,979,130
Ensembl chr 5:99,955,935...99,978,938
JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 ISO RGD PMID:17537823 RGD:9686091 NCBI chr11:50,375,257...50,386,528
Ensembl chr11:50,376,990...50,386,528
JBrowse link
G Hnrnph3 heterogeneous nuclear ribonucleoprotein H3 ISO RGD PMID:17537823 RGD:9686091 NCBI chr10:63,014,664...63,023,980
Ensembl chr10:63,014,664...63,024,217
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr13:58,391,132...58,403,343
Ensembl chr13:58,391,142...58,403,343
JBrowse link
G Hnrnpl heterogeneous nuclear ribonucleoprotein L ISO RGD PMID:17537823 RGD:9686091 NCBI chr 7:28,808,546...28,822,268
Ensembl chr 7:28,808,541...28,822,266
JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:33,646,233...33,685,458
Ensembl chr17:33,646,233...33,686,860
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:136,310,942...136,345,981
Ensembl chr 4:136,310,942...136,359,447
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 1:178,321,108...178,338,891
Ensembl chr 1:178,321,108...178,337,797
JBrowse link
G Hspa1a heat shock protein 1A IEA KEGG mmu:03040 NCBI chr17:34,969,359...34,972,156
Ensembl chr17:34,969,190...34,972,156
JBrowse link
G Hspa1b heat shock protein 1B IEA KEGG mmu:03040 NCBI chr17:34,956,429...34,959,238
Ensembl chr17:34,956,436...34,959,238
JBrowse link
G Hspa1l heat shock protein 1-like IEA KEGG mmu:03040 NCBI chr17:34,972,703...34,979,228
Ensembl chr17:34,972,703...34,979,285
JBrowse link
G Hspa2 heat shock protein 2 IEA KEGG mmu:03040 NCBI chr12:76,403,812...76,406,938
Ensembl chr12:76,404,176...76,406,938
JBrowse link
G Hspa8 heat shock protein 8 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 9:40,801,276...40,805,202
Ensembl chr 9:40,800,984...40,810,087
JBrowse link
G Isy1 ISY1 splicing factor homolog IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 6:87,818,447...87,838,923
Ensembl chr 6:87,814,269...87,838,798
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:34,981,854...34,985,891
Ensembl chr17:34,981,862...34,985,891
JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:91,516,035...91,522,620
Ensembl chr 6:91,515,928...91,522,625
JBrowse link
G Lsm4 LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 8:70,673,231...70,678,752
Ensembl chr 8:70,673,248...70,678,752
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:56,701,063...56,704,699
Ensembl chr 6:56,701,063...56,704,710
JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 8:78,804,868...78,821,152
Ensembl chr 8:78,804,865...78,821,140
JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated ISO RGD PMID:17537823, PMID:19239890 RGD:9686089, RGD:9686091 NCBI chr10:80,852,825...80,855,209
Ensembl chr10:80,852,821...80,855,209
JBrowse link
G Lsm8 LSM8 homolog, U6 small nuclear RNA associated IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:18,848,635...18,854,052
Ensembl chr 6:18,848,579...18,855,751
JBrowse link
G Magoh mago homolog, exon junction complex core component IEA KEGG mmu:03040 NCBI chr 4:107,879,755...107,887,424
Ensembl chr 4:107,879,755...107,887,424
JBrowse link
G Magohb mago homolog B, exon junction complex core component IEA
ISO
KEGG PMID:15145352 mmu:03040, RGD:9686404 NCBI chr 6:131,284,389...131,293,244
Ensembl chr 6:131,284,388...131,293,244
JBrowse link
G Mbnl1 muscleblind like splicing factor 1 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:60,472,559...60,629,750
Ensembl chr 3:60,472,830...60,629,750
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 IEA KEGG mmu:03040 NCBI chr16:31,948,546...31,958,472
Ensembl chr16:31,948,513...31,961,781
JBrowse link
G Pcbp1 poly(rC) binding protein 1 IEA KEGG mmu:03040 NCBI chr 6:86,524,480...86,526,189
Ensembl chr 6:86,524,492...86,526,321
JBrowse link
G Phf5a PHD finger protein 5A IEA KEGG mmu:03040 NCBI chr15:81,864,516...81,871,892
Ensembl chr15:81,864,520...81,871,911
JBrowse link
G Plrg1 pleiotropic regulator 1 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 3:83,055,538...83,072,291
Ensembl chr 3:83,055,522...83,072,355
JBrowse link
G Pnn pinin ISO RGD PMID:15145352 RGD:9686404 NCBI chr12:59,066,919...59,074,017
Ensembl chr12:59,066,884...59,073,998
JBrowse link
G Ppie peptidylprolyl isomerase E (cyclophilin E) IEA
ISO
KEGG PMID:18544344, PMID:23742842 mmu:03040, RGD:9686376, RGD:9686094 NCBI chr 4:123,127,114...123,139,990
Ensembl chr 4:123,127,115...123,139,951
JBrowse link
G Ppig peptidyl-prolyl isomerase G (cyclophilin G) ISO RGD PMID:18544344 RGD:9686376 NCBI chr 2:69,722,753...69,754,059
Ensembl chr 2:69,722,545...69,754,012
JBrowse link
G Ppih peptidyl prolyl isomerase H IEA
ISO
KEGG PMID:18544344 mmu:03040, RGD:9686376 NCBI chr 4:119,300,010...119,320,523
Ensembl chr 4:119,300,010...119,320,546
JBrowse link
G Ppil1 peptidylprolyl isomerase (cyclophilin)-like 1 IEA
ISO
KEGG PMID:18544344, PMID:23742842 mmu:03040, RGD:9686376, RGD:9686094 NCBI chr17:29,250,835...29,263,971
Ensembl chr17:29,250,803...29,264,186
JBrowse link
G Ppil2 peptidylprolyl isomerase (cyclophilin)-like 2 ISO RGD PMID:18544344 RGD:9686376 NCBI chr16:17,086,555...17,111,263
Ensembl chr16:17,086,555...17,111,257
JBrowse link
G Ppil3 peptidylprolyl isomerase (cyclophilin)-like 3 ISO RGD PMID:18544344 RGD:9686376 NCBI chr 1:58,430,993...58,445,591
Ensembl chr 1:58,430,994...58,445,486
JBrowse link
G Pqbp1 polyglutamine binding protein 1 IEA KEGG mmu:03040 NCBI chr  X:7,894,519...7,899,269
Ensembl chr  X:7,894,519...7,899,269
JBrowse link
G Prpf18 pre-mRNA processing factor 18 IEA
ISO
KEGG PMID:24452469 mmu:03040, RGD:9686092 NCBI chr 2:4,622,058...4,652,135
Ensembl chr 2:4,622,058...4,652,113
JBrowse link
G Prpf19 pre-mRNA processing factor 19 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr19:10,895,231...10,909,559
Ensembl chr19:10,895,231...10,909,559
JBrowse link
G Prpf3 pre-mRNA processing factor 3 IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 3:95,830,124...95,855,885
Ensembl chr 3:95,830,124...95,855,885
JBrowse link
G Prpf31 pre-mRNA processing factor 31 IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 7:3,629,985...3,642,485
Ensembl chr 7:3,629,985...3,642,486
JBrowse link
G Prpf38a PRP38 pre-mRNA processing factor 38 (yeast) domain containing A IEA KEGG mmu:03040 NCBI chr 4:108,564,867...108,579,336
Ensembl chr 4:108,563,172...108,579,336
JBrowse link
G Prpf38b PRP38 pre-mRNA processing factor 38 (yeast) domain containing B IEA KEGG mmu:03040 NCBI chr 3:108,902,805...108,911,729
Ensembl chr 3:108,902,805...108,911,727
JBrowse link
G Prpf4 pre-mRNA processing factor 4 IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 4:62,408,762...62,426,990
Ensembl chr 4:62,408,797...62,426,990
JBrowse link
G Prpf40a pre-mRNA processing factor 40A IEA KEGG mmu:03040 NCBI chr 2:53,134,702...53,191,438
Ensembl chr 2:53,134,704...53,191,702
Ensembl chr 2:53,134,704...53,191,702
JBrowse link
G Prpf40b pre-mRNA processing factor 40B IEA KEGG mmu:03040 NCBI chr15:99,295,076...99,317,018
Ensembl chr15:99,295,087...99,317,018
JBrowse link
G Prpf6 pre-mRNA splicing factor 6 IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 2:181,601,319...181,655,661
Ensembl chr 2:181,591,868...181,655,660
JBrowse link
G Prpf8 pre-mRNA processing factor 8 IEA
ISO
KEGG PMID:23592432 mmu:03040, RGD:9686090 NCBI chr11:75,486,777...75,509,447
Ensembl chr11:75,486,816...75,509,449
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr10:79,854,432...79,864,435
Ensembl chr10:79,854,427...79,864,771
JBrowse link
G Ptbp2 polypyrimidine tract binding protein 2 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 3:119,718,741...119,784,647
Ensembl chr 3:119,718,742...119,784,466
JBrowse link
G Puf60 poly-U binding splicing factor 60 IEA KEGG mmu:03040 NCBI chr15:76,070,182...76,082,537
Ensembl chr15:76,070,182...76,080,924
JBrowse link
G Qk quaking ISO RGD PMID:23385723 RGD:9686381 NCBI chr17:10,206,471...10,319,361
Ensembl chr17:10,202,601...10,319,854
JBrowse link
G Rbm17 RNA binding motif protein 17 IEA KEGG mmu:03040 NCBI chr 2:11,585,439...11,603,199
Ensembl chr 2:11,585,437...11,604,153
JBrowse link
G Rbm22 RNA binding motif protein 22 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr18:60,560,786...60,572,729
Ensembl chr18:60,560,736...60,572,810
JBrowse link
G Rbm25 RNA binding motif protein 25 IEA KEGG mmu:03040 NCBI chr12:83,632,208...83,683,127
Ensembl chr12:83,631,236...83,683,123
JBrowse link
G Rbm8a RNA binding motif protein 8a IEA
ISO
KEGG PMID:15145352 mmu:03040, RGD:9686404 NCBI chr 3:96,629,928...96,633,791
Ensembl chr 3:96,629,933...96,633,791
JBrowse link
G Rbm8a2 RNA binding motif protein 8A2 IEA KEGG mmu:03040 NCBI chr 1:175,978,218...175,978,943
Ensembl chr 1:175,977,777...175,979,114
JBrowse link
G Rbmx RNA binding motif protein, X chromosome IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr  X:57,383,348...57,393,046
Ensembl chr  X:57,383,530...57,393,036
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 ISO RGD PMID:15145352 RGD:9686404 NCBI chr17:24,414,646...24,425,898
Ensembl chr17:24,414,565...24,425,901
JBrowse link
G Sart1 squamous cell carcinoma antigen recognized by T cells 1 IEA KEGG mmu:03040 NCBI chr19:5,377,523...5,388,703
Ensembl chr19:5,377,523...5,388,703
JBrowse link
G Sart3 squamous cell carcinoma antigen recognized by T cells 3 ISO RGD PMID:23592432 RGD:9686090 NCBI chr 5:113,742,444...113,772,400
Ensembl chr 5:113,742,446...113,772,510
JBrowse link
G Sf1 splicing factor 1 ISO RGD PMID:19239890 RGD:9686089 NCBI chr19:6,363,673...6,378,038
Ensembl chr19:6,363,690...6,378,030
JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:4,160,354...4,182,541
Ensembl chr11:4,160,350...4,182,541
JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr10:80,798,735...80,804,922
Ensembl chr10:80,798,198...80,804,924
JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 4:124,714,861...124,732,423
Ensembl chr 4:124,714,776...124,732,460
JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 1:54,985,169...55,027,501
Ensembl chr 1:54,985,169...55,027,481
JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr19:5,273,921...5,295,457
Ensembl chr19:5,273,932...5,295,455
JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 8:110,810,491...110,846,806
Ensembl chr 8:110,810,239...110,846,787
JBrowse link
G Sf3b4 splicing factor 3b, subunit 4 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 3:96,172,506...96,177,564
Ensembl chr 3:96,172,332...96,177,564
JBrowse link
G Sf3b5 splicing factor 3b, subunit 5 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr10:13,008,450...13,009,183
Ensembl chr10:13,005,343...13,009,183
JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr12:4,817,608...4,827,659
Ensembl chr12:4,817,544...4,827,659
JBrowse link
G Slu7 SLU7 splicing factor homolog (S. cerevisiae) IEA
ISO
KEGG PMID:24452469 mmu:03040, RGD:9686092 NCBI chr11:43,433,726...43,447,982
Ensembl chr11:43,433,744...43,447,981
JBrowse link
G Smndc1 survival motor neuron domain containing 1 IEA KEGG mmu:03040 NCBI chr19:53,379,214...53,390,701
Ensembl chr19:53,379,390...53,390,578
JBrowse link
G Snrnp200 small nuclear ribonucleoprotein 200 (U5) IEA
ISO
KEGG PMID:23454554, PMID:23592432 mmu:03040, RGD:9686093, RGD:9686090 NCBI chr 2:127,208,386...127,240,453
Ensembl chr 2:127,208,386...127,240,451
JBrowse link
G Snrnp27 small nuclear ribonucleoprotein 27 (U4/U6.U5) IEA KEGG mmu:03040 NCBI chr 6:86,675,169...86,684,491
Ensembl chr 6:86,675,151...86,684,522
JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) IEA KEGG mmu:03040 NCBI chr 4:130,360,132...130,390,033
Ensembl chr 4:130,360,132...130,390,026
JBrowse link
G Snrnp70 small nuclear ribonucleoprotein 70 (U1) IEA
ISO
KEGG PMID:23592432 mmu:03040, RGD:9686090 NCBI chr 7:45,376,454...45,395,742
Ensembl chr 7:45,376,453...45,395,742
JBrowse link
G Snrpa small nuclear ribonucleoprotein polypeptide A IEA
ISO
KEGG PMID:23592432 mmu:03040, RGD:9686090 NCBI chr 7:27,187,006...27,196,271
Ensembl chr 7:27,187,005...27,196,271
JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 7:66,060,336...66,074,587
Ensembl chr 7:66,059,003...66,074,587
JBrowse link
G Snrpb small nuclear ribonucleoprotein B IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 2:130,171,636...130,179,382
Ensembl chr 2:130,171,414...130,179,403
JBrowse link
G Snrpb2 U2 small nuclear ribonucleoprotein B IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr 2:143,063,069...143,072,052
Ensembl chr 2:143,063,039...143,072,853
JBrowse link
G Snrpc U1 small nuclear ribonucleoprotein C IEA
ISO
KEGG PMID:23592432 mmu:03040, RGD:9686090 NCBI chr17:27,840,028...27,851,968
Ensembl chr17:27,838,150...27,851,968
JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr18:10,617,796...10,628,230
Ensembl chr18:10,617,775...10,642,079
JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 7:19,149,445...19,152,734
Ensembl chr 7:19,149,722...19,153,542
JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr10:75,518,042...75,535,440
Ensembl chr10:75,517,551...75,537,381
JBrowse link
G Snrpe small nuclear ribonucleoprotein E IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 1:133,603,871...133,610,280
Ensembl chr 1:133,603,871...133,610,291
JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr10:93,583,029...93,589,658
Ensembl chr10:93,583,029...93,589,706
JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 6:86,371,540...86,378,902
Ensembl chr 6:86,371,304...86,379,328
JBrowse link
G Snu13 SNU13 homolog, small nuclear ribonucleoprotein (U4/U6.U5) IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr15:82,041,345...82,047,598
Ensembl chr15:82,040,525...82,047,598
JBrowse link
G Snw1 SNW domain containing 1 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr12:87,449,910...87,472,299
Ensembl chr12:87,449,075...87,472,274
JBrowse link
G Srrm1 serine/arginine repetitive matrix 1 ISO RGD PMID:17537823, PMID:15145352 RGD:9686091, RGD:9686404 NCBI chr 4:135,320,484...135,353,277
Ensembl chr 4:135,320,484...135,353,321
JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 ISO RGD PMID:17537823 RGD:9686091 NCBI chr17:23,790,527...23,824,741
Ensembl chr17:23,790,532...23,824,741
JBrowse link
G Srrm4 serine/arginine repetitive matrix 4 ISO RGD PMID:23498935 RGD:9686382 NCBI chr 5:116,439,268...116,592,562
Ensembl chr 5:116,439,275...116,591,817
JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr11:88,046,499...88,053,757
Ensembl chr11:88,047,373...88,053,755
JBrowse link
G Srsf10 serine and arginine-rich splicing factor 10 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 4:135,855,752...135,869,908
Ensembl chr 4:135,855,747...135,869,908
JBrowse link
G Srsf11 serine and arginine-rich splicing factor 11 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 3:158,010,915...158,036,667
Ensembl chr 3:158,010,473...158,036,639
JBrowse link
G Srsf12 serine and arginine-rich splicing factor 12 ISO RGD PMID:17537823 RGD:9686091 NCBI chr 4:33,208,991...33,233,343
Ensembl chr 4:33,208,991...33,233,340
JBrowse link
G Srsf2 serine and arginine-rich splicing factor 2 IEA
ISO
KEGG PMID:17537823 mmu:03040, RGD:9686091 NCBI chr11:116,849,897...116,853,675
Ensembl chr11:116,849,901...116,853,094
JBrowse link
G Srsf3 serine and arginine-rich splicing factor 3 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:29,032,660...29,043,372
Ensembl chr17:29,032,628...29,043,373
JBrowse link
G Srsf4 serine and arginine-rich splicing factor 4 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 4:131,873,530...131,901,725
Ensembl chr 4:131,873,617...131,901,706
JBrowse link
G Srsf5 serine and arginine-rich splicing factor 5 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr12:80,945,495...80,950,507
Ensembl chr12:80,945,504...80,950,507
JBrowse link
G Srsf6 serine and arginine-rich splicing factor 6 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 2:162,931,508...162,937,121
Ensembl chr 2:162,931,528...162,937,121
JBrowse link
G Srsf7 serine and arginine-rich splicing factor 7 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr17:80,200,080...80,207,369
Ensembl chr17:80,200,080...80,207,307
JBrowse link
G Srsf9 serine and arginine-rich splicing factor 9 IEA
ISO
KEGG PMID:17537823, PMID:19239890 mmu:03040, RGD:9686091, RGD:9686089 NCBI chr 5:115,327,163...115,333,843
Ensembl chr 5:115,327,177...115,333,080
JBrowse link
G Syf2 SYF2 homolog, RNA splicing factor (S. cerevisiae) IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 4:134,930,980...134,937,537
Ensembl chr 4:134,930,898...134,937,548
JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein ISO RGD PMID:17537823 RGD:9686091 NCBI chr 9:88,449,364...88,482,591
Ensembl chr 9:88,447,009...88,482,574
JBrowse link
G Tcerg1 transcription elongation regulator 1 (CA150) IEA KEGG mmu:03040 NCBI chr18:42,511,304...42,575,785
Ensembl chr18:42,511,487...42,575,793
JBrowse link
G Thoc1 THO complex 1 IEA KEGG mmu:03040 NCBI chr18:9,958,180...9,995,484
Ensembl chr18:9,957,906...9,995,489
JBrowse link
G Thoc2 THO complex 2 IEA KEGG mmu:03040 NCBI chr  X:41,794,992...41,911,937
Ensembl chr  X:41,794,991...41,920,674
JBrowse link
G Thoc3 THO complex 3 IEA KEGG mmu:03040 NCBI chr13:54,458,837...54,468,840
Ensembl chr13:54,458,837...54,468,849
JBrowse link
G Tial1 Tia1 cytotoxic granule-associated RNA binding protein-like 1 ISO RGD PMID:23385723 RGD:9686381 NCBI chr 7:128,439,772...128,461,726
Ensembl chr 7:128,439,777...128,461,717
JBrowse link
G Tra2a transformer 2 alpha IEA KEGG mmu:03040 NCBI chr 6:49,243,921...49,264,248
Ensembl chr 6:49,243,924...49,264,033
JBrowse link
G Tra2b transformer 2 beta IEA KEGG mmu:03040 NCBI chr16:22,244,552...22,266,005
Ensembl chr16:22,244,549...22,266,005
JBrowse link
G Txnl4a thioredoxin-like 4A ISO RGD PMID:19239890 RGD:9686089 NCBI chr18:80,206,826...80,225,851
Ensembl chr18:80,206,765...80,212,741
Ensembl chr18:80,206,765...80,212,741
JBrowse link
G U2af1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr17:31,647,081...31,659,148
Ensembl chr17:31,647,081...31,658,892
JBrowse link
G U2af2 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 IEA
ISO
KEGG PMID:19239890 mmu:03040, RGD:9686089 NCBI chr 7:5,060,885...5,079,945
Ensembl chr 7:5,062,143...5,079,938
JBrowse link
G Usp39 ubiquitin specific peptidase 39 IEA KEGG mmu:03040 NCBI chr 6:72,318,676...72,345,208
Ensembl chr 6:72,318,678...72,345,184
JBrowse link
G Wbp11 WW domain binding protein 11 IEA KEGG mmu:03040 NCBI chr 6:136,813,654...136,828,216
Ensembl chr 6:136,813,654...136,828,233
JBrowse link
G Xab2 XPA binding protein 2 IEA
ISO
KEGG PMID:23742842 mmu:03040, RGD:9686094 NCBI chr 8:3,610,087...3,621,334
Ensembl chr 8:3,608,421...3,621,316
JBrowse link
G Zmat2 zinc finger, matrin type 2 IEA KEGG mmu:03040 NCBI chr18:36,793,923...36,799,660
Ensembl chr18:36,793,876...36,799,666
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  pathway 6067
    regulatory pathway 3684
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1667
        RNA processing pathway 256
          RNA maturation pathway 203
            mRNA maturation pathway 185
              spliceosome pathway 159
Path 2
Term Annotations click to browse term
  pathway 6067
    regulatory pathway 3684
      pathway pertinent to DNA replication and repair, cell cycle, maintenance of genomic integrity, RNA and protein biosynthesis 1667
        transcription pathway 1083
          RNA polymerase transcription pathway 394
            eukaryotic RNA polymerase transcription pathway 394
              RNA polymerase II transcription pathway 325
                lncRNA maturation pathway 159
                  spliceosome pathway 159
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.