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RAT STRAINS - ANNOTATIONS

The Rat Strain Ontology (RS) is currently being developed at the Rat Genome Database. For more information about this vocabulary or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:recombinant inbred strain
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Accession:RS:0000463 term browser browse the term
Definition:Recombinant inbred strains are the progeny contain unique, approximately equal proportions of genetic contribution from two original progenitor inbred strains.


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BXH/Ipcv term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alc24 Alcohol consumption QTL 24 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:161,072,673...178,935,582 JBrowse link
Q Alc25 Alcohol consumption QTL 25 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:227,509,470...249,252,048 JBrowse link
Q Alc26 Alcohol consumption QTL 26 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 2:237,712,398...257,579,826 JBrowse link
Q Alc27 Alcohol consumption QTL 27 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:34,257,766...53,855,198 JBrowse link
Q Alc28 Alcohol consumption QTL 28 IEA RGD PMID:24961585 RGD:8663441 NCBI chr12:29,113,609...50,757,185 JBrowse link
Q Alc29 Alcohol consumption QTL 29 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:227,509,470...255,131,140 JBrowse link
Q Alc30 Alcohol consumption QTL 30 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 3:5,654,639...25,105,730 JBrowse link
Q Alc31 Alcohol consumption QTL 31 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:135,053...23,600,274 JBrowse link
Q Alc32 Alcohol consumption QTL 32 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 8:95,319,530...115,625,029 JBrowse link
Q Alc33 Alcohol consumption QTL 33 IEA RGD PMID:24961585 RGD:8663441 NCBI chr12:29,113,609...49,560,679 JBrowse link
Q Alc34 Alcohol consumption QTL 34 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:227,509,470...249,252,048 JBrowse link
Q Alc35 Alcohol consumption QTL 35 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:9,974,277...22,477,622 JBrowse link
Q Alc36 Alcohol consumption QTL 36 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 2:233,013,605...253,626,471 JBrowse link
Q Alc37 Alcohol consumption QTL 37 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:9,974,277...22,477,622 JBrowse link
Q Bp144 Blood pressure QTL 144 IEA RGD PMID:8938440 RGD:619638 NCBI chr20:1...5,192,000 JBrowse link
Q Bp271 Blood pressure QTL 271 IEA RGD PMID:11882571 RGD:625381 NCBI chr 8:28,168,023...50,708,951 JBrowse link
Q Bp272 Blood pressure QTL 272 IEA RGD PMID:11882571 RGD:625381 NCBI chr 6:1,120,393...28,706,721 JBrowse link
Q Bp32 Blood pressure QTL 32 IEA RGD PMID:7560090 RGD:61044 NCBI chr19:24,818,257...62,275,575 JBrowse link
Q Bp33 Blood pressure QTL 33 IEA RGD PMID:7560090 RGD:61044 NCBI chr 4:1...25,545,519 JBrowse link
Q Fetw1 Fetal weight QTL 1 IEA RGD PMID:16914718 RGD:2300320 NCBI chr 1:88,634,585...106,002,500 JBrowse link
Q Hpcl1 Hepatic cholesterol level QTL 1 IEA RGD PMID:9600105 RGD:629576 NCBI chr10:36,584,373...53,645,194 JBrowse link
Q Hrtrt19 Heart rate QTL 19 IEA RGD PMID:11882571 RGD:625381 NCBI chr 2:236,318,496...243,026,643 JBrowse link
Q Hrtrt20 Heart rate QTL 20 IEA RGD PMID:11882571 RGD:625381 NCBI chr 1:201,358,068...221,983,732 JBrowse link
Q Hrtrt21 Heart rate QTL 21 IEA RGD PMID:11882571 RGD:625381 NCBI chr10:55,224,855...100,224,855 JBrowse link
Q Plaw1 Placental weight QTL 1 IEA RGD PMID:16914718 RGD:2300320 NCBI chr15:75,761,024...109,400,896 JBrowse link
Q Sach6 Saccharin preference QTL 6 IEA RGD PMID:11958542 RGD:631221 NCBI chr 2:116,075,644...228,737,869 JBrowse link
Q Sach7 Saccharin preference QTL 7 IEA RGD PMID:11958542 RGD:631221 NCBI chr 4:55,791,564...82,134,846 JBrowse link
BXH2/Cub term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bw175 Body weight QTL 175 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 8:81,413,898...91,140,553 JBrowse link
Q Kidm55 Kidney mass QTL 55 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 7:78,758,303...80,297,776 JBrowse link
Q Livw4 Liver weight QTL 4 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 7:78,758,303...80,297,776 JBrowse link
Q Scl69 Serum cholesterol level QTL 69 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:21,223,803...66,223,803 JBrowse link
Q Scl70 Serum cholesterol level QTL 70 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:21,223,803...66,223,803 JBrowse link
Q Scl71 Serum cholesterol level QTL 71 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:24,772,984...28,136,884 JBrowse link
Q Scl72 Serum cholesterol level QTL 72 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:24,772,984...28,136,884 JBrowse link
Q Scl73 Serum cholesterol level QTL 73 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:24,772,984...28,136,884 JBrowse link
Q Scl74 Serum cholesterol level QTL 74 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:39,248,391...52,182,792 JBrowse link
Q Scl75 Serum cholesterol level QTL 75 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:39,248,391...52,182,792 JBrowse link
Q Scl76 Serum cholesterol level QTL 76 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 4:47,685,694...55,791,834 JBrowse link
Q Scl77 Serum cholesterol level QTL 77 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 4:47,685,694...55,791,834 JBrowse link
Q Scl78 Serum cholesterol level QTL 78 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 4:47,685,694...55,791,834 JBrowse link
Q Scl79 Serum cholesterol level QTL 79 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 7:98,200,188...111,043,530 JBrowse link
Q Scl80 Serum cholesterol level QTL 80 IEA RGD PMID:25296178 RGD:10402111 NCBI chr11:80,358,408...87,200,449 JBrowse link
Q Stl33 Serum triglyceride level QTL 33 IEA RGD PMID:25296178 RGD:10402111 NCBI chr 3:39,248,391...52,182,792 JBrowse link
Q Stl34 Serum triglyceride level QTL 34 IEA RGD PMID:25296178 RGD:10402111 NCBI chr12:1...22,853,017 JBrowse link
BXS/Ipcv term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Gluco6 Glucose level QTL 6 IEA RGD PMID:12016513 RGD:619533 NCBI chr 7:103,867,802...126,080,176 JBrowse link
Q Insglur1 Insulin/glucose ratio QTL 1 IEA RGD PMID:12016513 RGD:619533 NCBI chr 3:120,917,788...141,971,336 JBrowse link
Q Insglur2 Insulin/glucose ratio QTL 2 IEA RGD PMID:12016513 RGD:619533 NCBI chr19:37,916,799...60,220,451 JBrowse link
DXE3/Ztm term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Pia8 Pristane induced arthritis QTL 8 IEA RGD PMID:11090241 RGD:629570 NCBI chr 1:1...64,407,321 JBrowse link
HXB-1-43/Ipcv term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Hcuc1 Hepatic copper content QTL 1 IEA RGD PMID:11741328 RGD:619607
Q Hcuc2 Hepatic copper content QTL 2 IEA RGD PMID:11741328 RGD:619607 NCBI chr16:1...41,240,957 JBrowse link
Q Hpcl1 Hepatic cholesterol level QTL 1 IEA RGD PMID:9600105 RGD:629576 NCBI chr10:36,584,373...53,645,194 JBrowse link
HXB/Ipcv term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Alc24 Alcohol consumption QTL 24 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:161,072,673...178,935,582 JBrowse link
Q Alc25 Alcohol consumption QTL 25 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:227,509,470...249,252,048 JBrowse link
Q Alc26 Alcohol consumption QTL 26 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 2:237,712,398...257,579,826 JBrowse link
Q Alc27 Alcohol consumption QTL 27 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:34,257,766...53,855,198 JBrowse link
Q Alc28 Alcohol consumption QTL 28 IEA RGD PMID:24961585 RGD:8663441 NCBI chr12:29,113,609...50,757,185 JBrowse link
Q Alc29 Alcohol consumption QTL 29 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:227,509,470...255,131,140 JBrowse link
Q Alc30 Alcohol consumption QTL 30 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 3:5,654,639...25,105,730 JBrowse link
Q Alc31 Alcohol consumption QTL 31 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:135,053...23,600,274 JBrowse link
Q Alc32 Alcohol consumption QTL 32 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 8:95,319,530...115,625,029 JBrowse link
Q Alc33 Alcohol consumption QTL 33 IEA RGD PMID:24961585 RGD:8663441 NCBI chr12:29,113,609...49,560,679 JBrowse link
Q Alc34 Alcohol consumption QTL 34 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 1:227,509,470...249,252,048 JBrowse link
Q Alc35 Alcohol consumption QTL 35 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:9,974,277...22,477,622 JBrowse link
Q Alc36 Alcohol consumption QTL 36 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 2:233,013,605...253,626,471 JBrowse link
Q Alc37 Alcohol consumption QTL 37 IEA RGD PMID:24961585 RGD:8663441 NCBI chr 6:9,974,277...22,477,622 JBrowse link
Q Bp271 Blood pressure QTL 271 IEA RGD PMID:11882571 RGD:625381 NCBI chr 8:28,168,023...50,708,951 JBrowse link
Q Bp272 Blood pressure QTL 272 IEA RGD PMID:11882571 RGD:625381 NCBI chr 6:1,120,393...28,706,721 JBrowse link
Q Bp32 Blood pressure QTL 32 IEA RGD PMID:7560090 RGD:61044 NCBI chr19:24,818,257...62,275,575 JBrowse link
Q Bp33 Blood pressure QTL 33 IEA RGD PMID:7560090 RGD:61044 NCBI chr 4:1...25,545,519 JBrowse link
Q Fetw1 Fetal weight QTL 1 IEA RGD PMID:16914718 RGD:2300320 NCBI chr 1:88,634,585...106,002,500 JBrowse link
Q Hrtrt19 Heart rate QTL 19 IEA RGD PMID:11882571 RGD:625381 NCBI chr 2:236,318,496...243,026,643 JBrowse link
Q Hrtrt20 Heart rate QTL 20 IEA RGD PMID:11882571 RGD:625381 NCBI chr 1:201,358,068...221,983,732 JBrowse link
Q Hrtrt21 Heart rate QTL 21 IEA RGD PMID:11882571 RGD:625381 NCBI chr10:55,224,855...100,224,855 JBrowse link
Q Plaw1 Placental weight QTL 1 IEA RGD PMID:16914718 RGD:2300320 NCBI chr15:75,761,024...109,400,896 JBrowse link
Q Sach6 Saccharin preference QTL 6 IEA RGD PMID:11958542 RGD:631221 NCBI chr 2:116,075,644...228,737,869 JBrowse link
Q Sach7 Saccharin preference QTL 7 IEA RGD PMID:11958542 RGD:631221 NCBI chr 4:55,791,564...82,134,846 JBrowse link
LEXF/Stm term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Teswt1 Testicular weight QTL 1 IEA RGD PMID:16651691 RGD:1625009 NCBI chr 7:88,365,265...103,867,802 JBrowse link
Q Teswt2 Testicular weight QTL 2 IEA RGD PMID:16651691 RGD:1625009 NCBI chr 1:215,711,860...258,765,521 JBrowse link
Q Tls1 T-lymphoma susceptibility QTL 1 IEA RGD PMID:10360666 RGD:619600 NCBI chr 5:93,273,130...138,273,130 JBrowse link
Q Tls2 T-lymphoma susceptibility QTL 2 IEA RGD PMID:10360666 RGD:619600 NCBI chr 7:88,365,265...119,318,087 JBrowse link
Q Tls3 T-lymphoma susceptibility QTL 3 IEA RGD PMID:10360666 RGD:619600 NCBI chr10:53,625,815...98,939,209 JBrowse link
LEXF10C/Stm term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Swd6 Spike wave discharge measurement QTL 6 IEA RGD PMID:23903052 RGD:7794751 NCBI chr 2:38,990,848...49,401,197 JBrowse link
Q Swd7 Spike wave discharge measurement QTL 7 IEA RGD PMID:23903052 RGD:7794751 NCBI chr 2:147,582,596...153,667,782 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  rat strain 6179
    recombinant inbred strain 191
      AXC 1
      BXH/Ipcv + 80
      BXS/Ipcv 4
      CXA + 2
      CXH + 4
      DXE + 5
      EXBH 1
      FXLE/Stm + 16
      HXB/Ipcv + 69
      LEXF/Stm + 33
      LXB 1
      MLCS 1
      SHR.LxXBXH2/Cub + 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.