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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:blood HDL cholesterol amount
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Accession:VT:0000184 term browser browse the term
Definition:The proportion, quantity, or volume in whole blood, serum, or plasma of the small lipoprotein:cholesterol complex that transports cholesterol out of the arteries and to the liver for reprocessing or excretion.
Synonyms:exact_synonym: blood HDL-C amount;   blood high density lipoprotein cholesterol amount;   circulating HDL cholesterol amount
 related_synonym: HDL cholesterol level;   HDL level;   circulating HDL cholesterol level


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blood HDL cholesterol amount term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scl12 Serum cholesterol level QTL 12 IDA RGD PMID:8698878 RGD:61079 NCBI chr19:15,294,524...33,991,703 JBrowse link
Q Scl27 Serum cholesterol level QTL 27 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:53,861,252...61,985,812 JBrowse link
Q Scl28 Serum cholesterol level QTL 28 IDA RGD PMID:11721057 RGD:70849 NCBI chr18:15,539,427...25,961,165 JBrowse link
Q Scl32 Serum cholesterol level QTL 32 IDA RGD PMID:15452030 RGD:1302893 NCBI chr17:18,676,140...63,676,140 JBrowse link
Q Scl61 Serum cholesterol level QTL 61 IDA RGD PMID:10720472 RGD:619689 NCBI chr17:28,073,589...56,207,236 JBrowse link
Q Scl79 Serum cholesterol level QTL 79 IDA RGD PMID:25296178 RGD:10402111 NCBI chr 7:98,200,188...111,043,530 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2379
    organism trait 932
      homeostasis trait 543
        blood homeostasis trait 427
          blood lipid amount 109
            blood sterol amount 64
              blood cholesterol amount 64
                blood HDL cholesterol amount 6
Path 2
Term Annotations click to browse term
  vertebrate trait 2379
    organism trait 932
      homeostasis trait 543
        molecule homeostasis trait 262
          lipid homeostasis trait 112
            sterol homeostasis trait 67
              sterol amount 67
                cholesterol amount 67
                  blood cholesterol amount 64
                    blood HDL cholesterol amount 6
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.