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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:femur morphology trait
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Accession:VT:0000559 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of the long bone of the thigh.


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femur morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss10 Bone structure and strength QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,578,577...169,852,184 JBrowse link
Q Bss11 Bone structure and strength QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:118,446,646...227,707,979 JBrowse link
Q Bss111 Bone structure and strength QTL 111 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 2:228,712,271...266,435,125 JBrowse link
Q Bss112 Bone structure and strength QTL 112 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 5:112,279,412...157,279,412 JBrowse link
Q Bss113 Bone structure and strength QTL 113 IDA RGD PMID:26297441 RGD:11528619 NCBI chr 3:12,236,221...15,217,668 JBrowse link
Q Bss115 Bone structure and strength QTL 115 IDA RGD PMID:26297441 RGD:11528619 NCBI chr 8:87,295,037...88,257,646 JBrowse link
Q Bss116 Bone structure and strength QTL 116 IDA RGD PMID:26297441 RGD:11528619 NCBI chr10:45,114,283...45,744,081 JBrowse link
Q Bss12 Bone structure and strength QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:56,092,756...101,092,756 JBrowse link
Q Bss120 Bone structure and strength QTL 120 IDA RGD PMID:26297441 RGD:11528619 NCBI chr17:81,940,459...82,621,764 JBrowse link
Q Bss121 Bone structure and strength QTL 121 IDA RGD PMID:26297441 RGD:11528619 NCBI chr20:35,276,651...37,867,728 JBrowse link
Q Bss14 Bone structure and strength QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:87,136,446...132,136,446 JBrowse link
Q Bss16 Bone structure and strength QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:6,161,722...76,002,731 JBrowse link
Q Bss17 Bone structure and strength QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 9:1,907,834...15,555,026 JBrowse link
Q Bss19 Bone structure and strength QTL 19 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:26,381,041...106,550,657 JBrowse link
Q Bss20 Bone structure and strength QTL 20 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:15,695,872...87,080,053 JBrowse link
Q Bss21 Bone structure and strength QTL 21 IDA RGD PMID:16461031 RGD:1578307 NCBI chr18:15,695,872...87,080,053 JBrowse link
Q Bss22 Bone structure and strength QTL 22 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bss23 Bone structure and strength QTL 23 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...43,665,660 JBrowse link
Q Bss24 Bone structure and strength QTL 24 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 7:55,495,689...100,495,689 JBrowse link
Q Bss25 Bone structure and strength QTL 25 IDA RGD PMID:18158281 RGD:2293455 NCBI chr10:73,008,136...112,626,471 JBrowse link
Q Bss26 Bone structure and strength QTL 26 IDA RGD PMID:18158281 RGD:2293455 NCBI chr13:71,230,858...114,033,958 JBrowse link
Q Bss27 Bone structure and strength QTL 27 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bss28 Bone structure and strength QTL 28 IDA RGD PMID:18158281 RGD:2293455 NCBI chr 6:1...43,665,660 JBrowse link
Q Bss29 Bone structure and strength QTL 29 IDA RGD PMID:18158281 RGD:2293455 NCBI chr15:17,249,641...62,249,641 JBrowse link
Q Bss3 Bone structure and strength QTL 3 IDA RGD PMID:16059631 RGD:1549683 NCBI chr 4:109,636,356...154,636,356 JBrowse link
Q Bss9 Bone structure and strength QTL 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:254,393...43,579,402 JBrowse link
femur mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd1 Bone mineral density QTL 1 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 1:254,393...86,904,217 JBrowse link
Q Bmd10 Bone mineral density QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:9,444,679...68,866,454 JBrowse link
Q Bmd11 Bone mineral density QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:24,631,874...69,631,874 JBrowse link
Q Bmd12 Bone mineral density QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:137,171,018...182,171,018 JBrowse link
Q Bmd13 Bone mineral density QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 5:107,119,214...152,119,214 JBrowse link
Q Bmd14 Bone mineral density QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:6,161,722...76,002,731 JBrowse link
Q Bmd15 Bone mineral density QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 7:12,687,850...67,801,690 JBrowse link
Q Bmd16 Bone mineral density QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:100,155,035...110,992,275 JBrowse link
Q Bmd17 Bone mineral density QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:26,381,041...106,550,657 JBrowse link
Q Bmd18 Bone mineral density QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:26,381,041...106,550,657 JBrowse link
Q Bmd19 Bone mineral density QTL 19 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,141,290...114,164,944 JBrowse link
Q Bmd20 Bone mineral density QTL 20 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 6:13,122,958...21,165,729 JBrowse link
Q Bmd21 Bone mineral density QTL 21 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:55,495,689...100,495,689 JBrowse link
Q Bmd22 Bone mineral density QTL 22 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd23 Bone mineral density QTL 23 IDA RGD PMID:18282130 RGD:2293456 NCBI chr18:53,033,494...68,524,999 JBrowse link
Q Bmd24 Bone mineral density QTL 24 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,141,290...114,164,944 JBrowse link
Q Bmd25 Bone mineral density QTL 25 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd26 Bone mineral density QTL 26 IDA RGD PMID:18282130 RGD:2293456 NCBI chr12:17,960,865...38,409,001 JBrowse link
Q Bmd27 Bone mineral density QTL 27 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 1:244,401,175...264,636,028 JBrowse link
Q Bmd28 Bone mineral density QTL 28 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,716,067...27,691,136 JBrowse link
Q Bmd3 Bone mineral density QTL 3 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 8:44,458,129...118,087,517 JBrowse link
Q Bmd30 Bone mineral density QTL 30 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd40 Bone mineral density QTL 40 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:221,901,238...266,901,238 JBrowse link
Q Bmd41 Bone mineral density QTL 41 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bmd43 Bone mineral density QTL 43 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bmd46 Bone mineral density QTL 46 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:91,664,872...136,664,872 JBrowse link
Q Bmd47 Bone mineral density QTL 47 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:20,641,371...65,641,371 JBrowse link
Q Bmd48 Bone mineral density QTL 48 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:194,378,622...239,378,622 JBrowse link
Q Bmd50 Bone mineral density QTL 50 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 4:61,975,371...106,975,371 JBrowse link
Q Bmd51 Bone mineral density QTL 51 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...35,623,029 JBrowse link
Q Bmd52 Bone mineral density QTL 52 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...35,623,029 JBrowse link
Q Bmd54 Bone mineral density QTL 54 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 7:55,495,689...100,495,689 JBrowse link
Q Bmd55 Bone mineral density QTL 55 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:83,894,304...128,894,304 JBrowse link
Q Bmd56 Bone mineral density QTL 56 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:104,682,575...133,307,652 JBrowse link
Q Bmd57 Bone mineral density QTL 57 IDA RGD PMID:18707222 RGD:2300109 NCBI chr10:73,008,136...112,626,471 JBrowse link
Q Bmd6 Bone mineral density QTL 6 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:254,393...43,579,402 JBrowse link
Q Bmd60 Bone mineral density QTL 60 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...27,597,761 JBrowse link
Q Bmd61 Bone mineral density QTL 61 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...27,597,761 JBrowse link
Q Bmd63 Bone mineral density QTL 63 IDA RGD PMID:18707222 RGD:2300109 NCBI chr15:17,249,641...62,249,641 JBrowse link
Q Bmd65 Bone mineral density QTL 65 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:30,533,614...75,533,614 JBrowse link
Q Bmd67 Bone mineral density QTL 67 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:1...38,195,967 JBrowse link
Q Bmd68 Bone mineral density QTL 68 IDA RGD PMID:18707222 RGD:2300109 NCBI chr20:26,608,843...56,205,956 JBrowse link
Q Bmd7 Bone mineral density QTL 7 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:254,393...43,579,402 JBrowse link
Q Bmd8 Bone mineral density QTL 8 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,578,577...94,578,577 JBrowse link
Q Bmd88 Bone mineral density QTL 88 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:27,486,036...63,264,281 JBrowse link
Q Bmd9 Bone mineral QTL density 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:9,444,679...49,615,930 JBrowse link
femur size trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd29 Bone mineral density QTL 29 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:55,495,689...100,495,689 JBrowse link
Q Bmd31 Bone mineral density QTL 31 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,716,067...27,691,136 JBrowse link
Q Bmd38 Bone mineral density QTL 38 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 5:8,632,285...53,632,285 JBrowse link
Q Bmd90 Bone mineral density QTL 90 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd91 Bone mineral density QTL 91 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:27,486,155...88,333,183 JBrowse link
femur width term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss15 Bone structure and strength QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:87,136,446...132,136,446 JBrowse link
Q Bss18 Bone structure and strength QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:100,155,035...110,992,275 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2379
    organism subdivision trait 180
      surface structure trait 180
        surface structure morphology trait 180
          appendage morphology trait 142
            limb morphology trait 142
              hindlimb morphology trait 136
                hindlimb long bone morphology trait 135
                  femur morphology trait 79
                    femur curvature trait 0
                    femur size trait + 53
Path 2
Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      connective tissue trait 366
        connective tissue morphology trait 309
          bone morphology trait 163
            appendicular skeleton morphology trait 139
              skeleton extremities morphology trait 139
                long bone morphology trait 139
                  hindlimb long bone morphology trait 135
                    femur morphology trait 79
                      femur curvature trait 0
                      femur size trait + 53
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.