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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:reproductive system morphology trait
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Accession:VT:0002160 term browser browse the term
Definition:Any measurable or observable characteristic related to the shape, structure, color, or pattern of any of the organs or tissues involved in the production of offspring.
Comment:pslim term
Synonyms:exact_synonym: reproductive anatomy
 xref: MP:0002160


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mammary gland integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Emca1 Estrogen-induced mammary cancer QTL 1 IDA RGD PMID:15611180 RGD:1358124 NCBI chr 5:102,945,579...154,732,228 JBrowse link
Q Emca10 Estrogen-induced mammary cancer QTL 10 IDA RGD PMID:18420736 RGD:2292503 NCBI chr 6:1,120,393...46,120,393 JBrowse link
Q Emca11 Estrogen-induced mammary cancer QTL 11 IDA RGD PMID:23151807 RGD:7364727 NCBI chr 5:103,580,245...117,037,276 JBrowse link
Q Emca12 Estrogen-induced mammary cancer QTL 12 IDA RGD PMID:23151807 RGD:7364727 NCBI chr 5:129,038,716...139,099,229 JBrowse link
Q Emca13 Estrogen-induced mammary cancer QTL 13 IDA RGD PMID:23151807 RGD:7364727 NCBI chr 5:9,514,842...103,580,403 JBrowse link
Q Emca2 Estrogen-induced mammary cancer QTL 2 IDA RGD PMID:15611180 RGD:1358124 NCBI chr18:19,031,030...68,436,105 JBrowse link
Q Emca4 Estrogen-induced mammary cancer QTL 4 IDA RGD PMID:16885383 RGD:1642522 NCBI chr 7:69,399,586...111,043,530 JBrowse link
Q Emca5 Estrogen-induced mammary cancer QTL 5 IDA RGD PMID:16885383 RGD:1642522 NCBI chr 3:45,406,058...177,699,992 JBrowse link
Q Emca6 Estrogen-induced mammary cancer QTL 6 IDA RGD PMID:16885383 RGD:1642522 NCBI chr 4:43,414,605...155,469,929 JBrowse link
Q Emca7 Estrogen-induced mammary cancer QTL 7 IDA RGD PMID:16885383 RGD:1642522 NCBI chr 6:2,537,030...111,715,717 JBrowse link
Q Emca8 Estrogen-induced mammary cancer QTL 8 IDA RGD PMID:16885383 RGD:1642522 NCBI chr 5:51,418,671...147,487,820 JBrowse link
Q Mamtr1 Mammary tumor resistance QTL 1 IDA RGD PMID:12844486 RGD:631852 NCBI chr 5:12,651,967...117,554,267 JBrowse link
Q Mamtr2 Mammary tumor resistance QTL 2 IDA RGD PMID:14522903 RGD:724790 NCBI chr 2:5,417,336...10,246,458 JBrowse link
Q Mamtr3 Mammary tumor resistance QTL 3 IDA RGD PMID:14522903 RGD:724790 NCBI chr 2:31,224,612...43,643,900 JBrowse link
Q Mamtr4 Mammary tumor resistance QTL 4 IDA RGD PMID:14522903 RGD:724790 NCBI chr 2:14,237,830...59,237,830 JBrowse link
Q Mamtr5 Mammary tumor resistance QTL 5 IDA RGD PMID:17230524 RGD:1599390 NCBI chr 5:18,847,913...63,847,913 JBrowse link
Q Mamtr6 Mammary tumor resistance QTL 6 IDA RGD PMID:17230524 RGD:1599390 NCBI chr18:20,285,758...87,080,053 JBrowse link
Q Mamtr7 Mammary tumor resistance QTL 7 IDA RGD PMID:19052818 RGD:2302423 NCBI chr10:9,841,807...108,540,162 JBrowse link
Q Mamtr8 Mammary tumor resistance QTL 8 IDA RGD PMID:19052818 RGD:2302423 NCBI chr18:32,670,352...87,080,053 JBrowse link
Q Mcs1 Mammary carcinoma susceptibility QTL 1 IDA RGD PMID:8168109 RGD:61080 NCBI chr 2:5,417,336...21,657,459 JBrowse link
Q Mcs12 Mammary carcinoma susceptibility QTL 12 IDA RGD PMID:16266982 RGD:1559294 NCBI chr 5:60,225,095...61,370,302 JBrowse link
Q Mcs13 Mammary carcinoma susceptibility QTL 13 IDA RGD PMID:16266982 RGD:1559294 NCBI chr 5:68,395,096...71,941,113 JBrowse link
Q Mcs14 Mammary carcinoma susceptibility QTL 14 IDA RGD PMID:16266982 RGD:1559294 NCBI chr 5:78,777,540...83,269,259 JBrowse link
Q Mcs15 Mammary carcinoma susceptibility QTL 15 IDA RGD PMID:16568087 RGD:1581951 NCBI chr10:88,544,136...107,545,372 JBrowse link
Q Mcs16 Mammary carcinoma susceptibility QTL 16 IDA RGD PMID:16568087 RGD:1581951 NCBI chr 1:1,868,045...43,724,576 JBrowse link
Q Mcs17 Mammary carcinoma susceptibility QTL 17 IDA RGD PMID:16568087 RGD:1581951 NCBI chr 1:215,684,498...260,684,498 JBrowse link
Q Mcs18 Mammary carcinoma susceptibility QTL 18 IDA RGD PMID:16568087 RGD:1581951 NCBI chr 2:5,417,336...42,777,046 JBrowse link
Q Mcs19 Mammary carcinoma susceptibility QTL 19 IDA RGD PMID:16568087 RGD:1581951 NCBI chr 5:103,265,614...107,119,704 JBrowse link
Q Mcs2 Mammary carcinoma susceptibility QTL 2 IDA RGD PMID:9584103 RGD:61081 NCBI chr 7:24,738,680...40,433,335 JBrowse link
Q Mcs20 Mammary carcinoma susceptibility QTL 20 IDA RGD PMID:16568087 RGD:1581951 NCBI chr 9:15,554,901...47,249,201 JBrowse link
Q Mcs21 Mammary carcinoma susceptibility QTL 21 IDA RGD PMID:16568087 RGD:1581951 NCBI chr10:30,021,354...54,057,745 JBrowse link
Q Mcs22 Mammary carcinoma susceptibility QTL 22 IDA RGD PMID:16568087 RGD:1581951 NCBI chr18:54,108,375...68,819,562 JBrowse link
Q Mcs23 Mammary carcinoma susceptibility QTL 23 IDA RGD PMID:17404222 RGD:1601189
Q Mcs24 Mammary carcinoma susceptibility QTL 24 IDA RGD PMID:17404222 RGD:1601189 NCBI chr 5:68,838,385...113,838,385 JBrowse link
Q Mcs25 Mammary carcinoma susceptibility QTL 25 IDA RGD PMID:20737482 RGD:4143380 NCBI chr 6:7,009,971...115,379,601 JBrowse link
Q Mcs26 Mammary carcinoma susceptibility QTL 26 IDA RGD PMID:20737482 RGD:4143380 NCBI chr 6:111,134,524...138,065,254 JBrowse link
Q Mcs27 Mammary carcinoma susceptibility QTL 27 IDA RGD PMID:20737482 RGD:4143380 NCBI chr13:48,776,655...53,264,877 JBrowse link
Q Mcs28 Mammary carcinoma susceptibility QTL 28 IDA RGD PMID:21205740 RGD:5684388 NCBI chr 5:80,154,593...80,451,339 JBrowse link
Q Mcs29 Mammary carcinoma susceptibility QTL 29 IDA RGD PMID:21205740 RGD:5684388 NCBI chr 5:80,229,223...80,401,274 JBrowse link
Q Mcs3 Mammary carcinoma susceptibility QTL 3 IDA RGD PMID:9584103 RGD:61081 NCBI chr 1:108,057,233...167,517,487 JBrowse link
Q Mcs30 Mammary carcinoma susceptibility QTL 30 IDA RGD PMID:24023717 RGD:7327193 NCBI chr12:1,258,139...10,257,059 JBrowse link
Q Mcs31 Mammary carcinoma susceptibility QTL 31 IDA RGD PMID:23967281 RGD:7794780 NCBI chr 9:90,024,661...119,983,851 JBrowse link
Q Mcs32 Mammary carcinoma susceptibility QTL 32 IDA RGD PMID:23967281 RGD:7794780 NCBI chr 1:122,614,824...262,664,716 JBrowse link
Q Mcs33 Mammary carcinoma susceptibility QTL 33 IDA RGD PMID:23967281 RGD:7794780 NCBI chr 5:136,640,731...173,707,219 JBrowse link
Q Mcs34 Mammary carcinoma susceptibility QTL 34 IDA RGD PMID:23967281 RGD:7794780
Q Mcs4 Mammary carcinoma susceptibility QTL 4 IDA RGD PMID:9584103 RGD:61081 NCBI chr 8:20,717,592...65,717,592 JBrowse link
Q Mcs5 Mammary carcinoma susceptibility QTL 5 IDA RGD PMID:11139513 RGD:62417 NCBI chr 5:56,991,667...137,729,065 JBrowse link
Q Mcs6 Mammary carcinoma susceptibility QTL 6 IDA RGD PMID:11139513 RGD:62417 NCBI chr 7:33,044,449...71,352,127 JBrowse link
Q Mcs7 Mammary carcinoma susceptibility QTL 7 IDA RGD PMID:11139513 RGD:62417 NCBI chr10:75,544,754...112,626,471 JBrowse link
Q Mcs8 Mammary carcinoma susceptibility QTL 8 IDA RGD PMID:11139513 RGD:62417 NCBI chr14:4,833,233...26,466,248 JBrowse link
Q Mcsm1 Mammary carcinoma susceptibility modifier QTL 1 IDA RGD PMID:11139513 RGD:62417 NCBI chr 6:62,263,348...107,263,348 JBrowse link
prostate integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Prcr1 Prostate cancer resistance QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr 2:93,995,316...169,852,800 JBrowse link
Q Prcr2 Prostate cancer resistance QTL 2 IDA RGD PMID:15805257 RGD:1358944 NCBI chr 1:21,812,623...44,409,802 JBrowse link
Q Prcs1 Prostate cancer susceptibility QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr19:15,939,528...38,798,459 JBrowse link
Q Prcs2 Prostate cancer susceptibility QTL 2 IDA RGD PMID:15805257 RGD:1358944 NCBI chr20:4,039,113...18,872,273 JBrowse link
seminal gland mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Inf1 Infertility severity QTL 1 IDA RGD PMID:10615258 RGD:631224 NCBI chr 8:27,841,496...72,841,496 JBrowse link
testis integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Tescar1 Testicular tumor resistance QTL 1 IDA RGD PMID:15805257 RGD:1358944 NCBI chr11:325,031...69,342,559 JBrowse link
testis mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Teswt1 Testicular weight QTL 1 IDA RGD PMID:16651691 RGD:1625009 NCBI chr 7:88,365,265...103,867,802 JBrowse link
Q Teswt2 Testicular weight QTL 2 IDA RGD PMID:16651691 RGD:1625009 NCBI chr 1:215,711,860...258,765,521 JBrowse link
uterus integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Eutr1 Estrogen induced uterine response QTL 1 IDA RGD PMID:16284801 RGD:1559292 NCBI chr 5:1,525,098...78,720,537 JBrowse link
Q Eutr2 Estrogen induced uterine response QTL 2 IDA RGD PMID:16284802 RGD:1559291 NCBI chr 5:35,225,432...108,092,802 JBrowse link
uterus morphology trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Edcs1 Endometrial carcinoma susceptibility QTL1 IDA update to integrity trait RGD PMID:11745480 RGD:1599856 NCBI chr11:19,016,272...25,069,932 JBrowse link
Q Edcs2 Endometrial carcinoma susceptibility QTL2 IDA update to integrity trait RGD PMID:11745480 RGD:1599856 NCBI chr12:8,249,608...20,590,080 JBrowse link
Q Edcs3 Endometrial carcinoma susceptibility QTL3 IDA update to integrity trait RGD PMID:11745480 RGD:1599856 NCBI chr20:1...25,653,396 JBrowse link
Q Edcs4 Endometrial carcinoma susceptibility QTL 4 IDA update to integrity trait RGD PMID:11745480 RGD:1599856 NCBI chr 1:226,706,329...271,706,329 JBrowse link
Q Edcs5 Endometrial carcinoma susceptibility QTL 5 IDA update to integrity trait RGD PMID:11745480 RGD:1599856 NCBI chr17:62,195,703...74,702,206 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      reproductive system trait 66
        reproductive system morphology trait 66
          female reproductive system morphology trait + 58
          germ cell morphology trait + 0
          gubernaculum morphology trait 0
          inguinal canal morphology trait + 0
          male reproductive system morphology trait + 8
          perineum morphology trait + 0
          sex gland size trait + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.