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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:bone mineral mass
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Accession:VT:0005007 term browser browse the term
Definition:The amount of matter in the minerals (inorganic elements or compounds that have importance in body functions) in osseous tissue forming a part of the skeleton.
Synonyms:related_synonym: bone mineral content;   bone mineral density


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femur mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd1 Bone mineral density QTL 1 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 1:254,393...86,904,217 JBrowse link
Q Bmd10 Bone mineral density QTL 10 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:9,444,679...68,866,454 JBrowse link
Q Bmd11 Bone mineral density QTL 11 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:24,631,874...69,631,874 JBrowse link
Q Bmd12 Bone mineral density QTL 12 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 4:137,171,018...182,171,018 JBrowse link
Q Bmd13 Bone mineral density QTL 13 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 5:107,119,214...152,119,214 JBrowse link
Q Bmd14 Bone mineral density QTL 14 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 6:6,161,722...76,002,731 JBrowse link
Q Bmd15 Bone mineral density QTL 15 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 7:12,687,850...67,801,690 JBrowse link
Q Bmd16 Bone mineral density QTL 16 IDA RGD PMID:16461031 RGD:1578307 NCBI chr10:100,155,035...110,992,275 JBrowse link
Q Bmd17 Bone mineral density QTL 17 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:26,381,041...106,550,657 JBrowse link
Q Bmd18 Bone mineral density QTL 18 IDA RGD PMID:16461031 RGD:1578307 NCBI chr15:26,381,041...106,550,657 JBrowse link
Q Bmd19 Bone mineral density QTL 19 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,141,290...114,164,944 JBrowse link
Q Bmd20 Bone mineral density QTL 20 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 6:13,122,958...21,165,729 JBrowse link
Q Bmd21 Bone mineral density QTL 21 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 7:55,495,689...100,495,689 JBrowse link
Q Bmd22 Bone mineral density QTL 22 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd23 Bone mineral density QTL 23 IDA RGD PMID:18282130 RGD:2293456 NCBI chr18:53,033,494...68,524,999 JBrowse link
Q Bmd24 Bone mineral density QTL 24 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 2:43,141,290...114,164,944 JBrowse link
Q Bmd25 Bone mineral density QTL 25 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd26 Bone mineral density QTL 26 IDA RGD PMID:18282130 RGD:2293456 NCBI chr12:17,960,865...38,409,001 JBrowse link
Q Bmd27 Bone mineral density QTL 27 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 1:244,401,175...264,636,028 JBrowse link
Q Bmd28 Bone mineral density QTL 28 IDA RGD PMID:18282130 RGD:2293456 NCBI chr17:4,716,067...27,691,136 JBrowse link
Q Bmd3 Bone mineral density QTL 3 IDA RGD PMID:16180139 RGD:1553896 NCBI chr 8:44,458,129...118,087,517 JBrowse link
Q Bmd30 Bone mineral density QTL 30 IDA RGD PMID:18282130 RGD:2293456 NCBI chr10:51,289,203...84,596,393 JBrowse link
Q Bmd40 Bone mineral density QTL 40 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:221,901,238...266,901,238 JBrowse link
Q Bmd41 Bone mineral density QTL 41 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bmd43 Bone mineral density QTL 43 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bmd46 Bone mineral density QTL 46 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:91,664,872...136,664,872 JBrowse link
Q Bmd47 Bone mineral density QTL 47 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:20,641,371...65,641,371 JBrowse link
Q Bmd48 Bone mineral density QTL 48 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:194,378,622...239,378,622 JBrowse link
Q Bmd50 Bone mineral density QTL 50 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 4:61,975,371...106,975,371 JBrowse link
Q Bmd51 Bone mineral density QTL 51 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...35,623,029 JBrowse link
Q Bmd52 Bone mineral density QTL 52 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 6:1...35,623,029 JBrowse link
Q Bmd54 Bone mineral density QTL 54 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 7:55,495,689...100,495,689 JBrowse link
Q Bmd55 Bone mineral density QTL 55 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:83,894,304...128,894,304 JBrowse link
Q Bmd56 Bone mineral density QTL 56 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 8:104,682,575...133,307,652 JBrowse link
Q Bmd57 Bone mineral density QTL 57 IDA RGD PMID:18707222 RGD:2300109 NCBI chr10:73,008,136...112,626,471 JBrowse link
Q Bmd6 Bone mineral density QTL 6 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:254,393...43,579,402 JBrowse link
Q Bmd60 Bone mineral density QTL 60 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...27,597,761 JBrowse link
Q Bmd61 Bone mineral density QTL 61 IDA RGD PMID:18707222 RGD:2300109 NCBI chr14:1...27,597,761 JBrowse link
Q Bmd63 Bone mineral density QTL 63 IDA RGD PMID:18707222 RGD:2300109 NCBI chr15:17,249,641...62,249,641 JBrowse link
Q Bmd65 Bone mineral density QTL 65 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:30,533,614...75,533,614 JBrowse link
Q Bmd67 Bone mineral density QTL 67 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:1...38,195,967 JBrowse link
Q Bmd68 Bone mineral density QTL 68 IDA RGD PMID:18707222 RGD:2300109 NCBI chr20:26,608,843...56,205,956 JBrowse link
Q Bmd7 Bone mineral density QTL 7 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:254,393...43,579,402 JBrowse link
Q Bmd8 Bone mineral density QTL 8 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 1:49,578,577...94,578,577 JBrowse link
Q Bmd88 Bone mineral density QTL 88 IDA RGD PMID:18282130 RGD:2293456 NCBI chr 9:27,486,036...63,264,281 JBrowse link
Q Bmd9 Bone mineral QTL density 9 IDA RGD PMID:16461031 RGD:1578307 NCBI chr 2:9,444,679...49,615,930 JBrowse link
lumbar vertebra mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd4 Bone mineral density QTL 4 IDA RGD PMID:16180139 RGD:1553896 NCBI chr10:20,170,031...102,897,474 JBrowse link
Q Bmd42 Bone mineral density QTL 42 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:189,170,900...234,170,900 JBrowse link
Q Bmd44 Bone mineral density QTL 44 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 1:58,209,327...103,209,327 JBrowse link
Q Bmd45 Bone mineral density QTL 45 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:91,664,872...136,664,872 JBrowse link
Q Bmd49 Bone mineral density QTL 49 IDA RGD PMID:18707222 RGD:2300109 NCBI chr 2:91,664,872...136,664,872 JBrowse link
Q Bmd5 Bone mineral density QTL 5 IDA RGD PMID:16180139 RGD:1553896
Q Bmd53 Bone mineral density QTL 53 IDA RGD PMID:18707222 RGD:2300109
Q Bmd58 Bone mineral density QTL 58 IDA RGD PMID:18707222 RGD:2300109 NCBI chr10:28,789,280...73,789,280 JBrowse link
Q Bmd59 Bone mineral density QTL 59 IDA RGD PMID:18707222 RGD:2300109 NCBI chr12:15,908,900...52,716,770 JBrowse link
Q Bmd62 Bone mineral density QTL 62 IDA RGD PMID:18707222 RGD:2300109 NCBI chr15:17,249,641...62,249,641 JBrowse link
Q Bmd64 Bone mineral density QTL 64 IDA RGD PMID:18707222 RGD:2300109 NCBI chr16:41,512,710...86,512,710 JBrowse link
Q Bmd66 Bone mineral density QTL 66 IDA RGD PMID:18707222 RGD:2300109 NCBI chr18:30,533,614...75,533,614 JBrowse link
tibia mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd69 Bone mineral density QTL 69 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:1...34,993,530 JBrowse link
Q Bmd70 Bone mineral density QTL 70 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,579,208...126,240,667 JBrowse link
Q Bmd71 Bone mineral density QTL 71 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,460,119...21,524,070 JBrowse link
Q Bmd72 Bone mineral density QTL 72 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Bmd73 Bone mineral density QTL 73 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Bmd74 Bone mineral density QTL 74 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:83,656,882...126,240,667 JBrowse link
Q Bmd75 Bone mineral density QTL 75 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 2:231,224,020...254,132,424 JBrowse link
Q Bmd76 Bone mineral density QTL 76 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:28,136,728...51,687,917 JBrowse link
Q Bmd77 Bone mineral density QTL 77 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:28,136,728...51,687,917 JBrowse link
Q Bmd78 Bone mineral density QTL 78 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 5:150,360,936...167,946,134 JBrowse link
Q Bmd79 Bone mineral density QTL 79 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 7:103,815,550...126,525,386 JBrowse link
Q Bmd80 Bone mineral density QTL 80 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:19,958,696...21,524,070 JBrowse link
Q Bmd81 Bone mineral density QTL 81 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 3:39,773,247...51,687,917 JBrowse link
Q Bmd82 Bone mineral density QTL 82 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 2:60,325,352...106,432,915 JBrowse link
Q Bmd83 Bone mineral density QTL 82 IDA RGD PMID:21818327 RGD:5684953
Q Bmd84 Bone mineral density QTL 84 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 8:46,588,437...54,065,241 JBrowse link
Q Bmd85 Bone mineral density QTL 85 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 2:60,325,352...106,432,915 JBrowse link
Q Bmd86 Bone mineral density QTL 86 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 4:55,324,857...79,575,658 JBrowse link
Q Bmd87 Bone mineral density QTL 87 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 4:55,324,857...79,575,658 JBrowse link
Q Bmd92 Bone mineral density QTL 92 IDA RGD PMID:27113531 RGD:11353859 NCBI chr 9:95,430,880...97,679,852 JBrowse link

Term paths to the root
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Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      connective tissue trait 366
        connective tissue morphology trait 309
          bone morphology trait 163
            bone mass 78
              bone mineral mass 78
                femur mineral mass 46
                humerus mineral mass 0
                lumbar vertebra mineral mass 12
                neurocranium mineral mass 0
                tibia mineral mass 20
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.