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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:tibia size trait
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Accession:VT:0100001 term browser browse the term
Definition:Any measurable or observable characteristic related to the physical magnitude of the medial and larger of the two bones of the lower leg, which articulates with the femur, fibula, and talus.


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tibia size trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss55 Bone structure and strength QTL 55 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,579,208...126,240,667 JBrowse link
Q Bss56 Bone structure and strength QTL 56 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,579,208...126,240,667 JBrowse link
Q Bss62 Bone structure and strength QTL 62 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,460,119...21,524,070 JBrowse link
Q Bss68 Bone structure and strength QTL 68 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Bss73 Bone structure and strength QTL 73 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:28,136,728...51,687,917 JBrowse link
Q Bss76 Bone structure and strength QTL 76 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 8:33,558,660...89,058,369 JBrowse link
Q Bss77 Bone structure and strength QTL 77 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 8:33,558,660...89,058,369 JBrowse link
Q Bss79 Bone structure and strength QTL 79 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:65,992,275...110,992,275 JBrowse link
Q Bss82 Bone structure and strength QTL 82 IDA RGD PMID:19113924 RGD:2312767 NCBI chr14:40,315,610...85,315,610 JBrowse link
Q Bss83 Bone structure and strength QTL 83 IDA RGD PMID:19113924 RGD:2312767 NCBI chr14:40,315,610...85,315,610 JBrowse link
Q Bss88 Bone structure and strength QTL 88 IDA RGD PMID:20699128 RGD:4889918
Q Bss89 Bone structure and strength QTL 89 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 8:54,065,044...89,058,369 JBrowse link
Q Bss93 Bone structure and strength QTL 93 IDA RGD PMID:20699128 RGD:4889918 NCBI chr17:27,690,959...63,994,435 JBrowse link
Q Bss96 Bone structure and strength QTL 96 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 4:55,324,857...79,575,658 JBrowse link
Q Bss97 Bone structure and strength QTL 97 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 4:55,324,857...79,575,658 JBrowse link
tibia area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss100 Bone structure and strength QTL 100 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 8:54,065,044...89,058,369 JBrowse link
Q Bss104 Bone structure and strength QTL 104 IDA RGD PMID:21818327 RGD:5684953 NCBI chr  X:121,442,246...134,627,946 JBrowse link
Q Bss54 Bone structure and strength QTL 54 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,579,208...126,240,667 JBrowse link
Q Bss61 Bone structure and strength QTL 61 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,460,119...21,524,070 JBrowse link
Q Bss67 Bone structure and strength QTL 67 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Bss72 Bone structure and strength QTL 72 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:28,136,728...51,687,917 JBrowse link
Q Bss86 Bone structure and strength QTL 86 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 1:53,851,348...83,657,083 JBrowse link
Q Bss87 Bone structure and strength QTL 87 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 1:53,851,348...83,657,083 JBrowse link
Q Bss90 Bone structure and strength QTL 90 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 9:92,741,297...98,606,834 JBrowse link
Q Bss91 Bone structure and strength QTL 91 IDA RGD PMID:20699128 RGD:4889918 NCBI chr10:85,513,822...95,638,337 JBrowse link
Q Bss92 Bone structure and strength QTL 92 IDA RGD PMID:20699128 RGD:4889918 NCBI chr14:87,458,772...106,641,756 JBrowse link
Q Bss94 Bone structure and strength QTL 94 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 1:49,547,328...83,657,083 JBrowse link
Q Bss95 Bone structure and strength QTL 95 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 3:1...37,891,710 JBrowse link
Q Bss99 Bone structure and strength QTL 99 IDA RGD PMID:21818327 RGD:5684953
tibia length term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bss51 Bone structure and strength QTL 51 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:1...34,993,530 JBrowse link
Q Bss53 Bone structure and strength QTL 53 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,579,208...126,240,667 JBrowse link
Q Bss60 Bone structure and strength QTL 60 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 8:54,065,044...89,058,369 JBrowse link
Q Bss66 Bone structure and strength QTL 66 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Lmblg1 Limb length QTL 1 IDA RGD PMID:15452030 RGD:1302893 NCBI chr 1:161,784,169...219,232,156 JBrowse link
Q Lmblg2 Limb length QTL 2 IDA RGD PMID:15452030 RGD:1302893 NCBI chr17:3,336,972...73,413,148 JBrowse link
Q Plsm3 Polydactyly-luxate syndrome (PLS) morphotypes QTL 3 IDA RGD PMID:8997636 RGD:632346 NCBI chr 7:1...37,009,673 JBrowse link
tibia mineral mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Bmd69 Bone mineral density QTL 69 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:1...34,993,530 JBrowse link
Q Bmd70 Bone mineral density QTL 70 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:43,579,208...126,240,667 JBrowse link
Q Bmd71 Bone mineral density QTL 71 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:5,460,119...21,524,070 JBrowse link
Q Bmd72 Bone mineral density QTL 72 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Bmd73 Bone mineral density QTL 73 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:11,314,489...83,657,083 JBrowse link
Q Bmd74 Bone mineral density QTL 74 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 1:83,656,882...126,240,667 JBrowse link
Q Bmd75 Bone mineral density QTL 75 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 2:231,224,020...254,132,424 JBrowse link
Q Bmd76 Bone mineral density QTL 76 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:28,136,728...51,687,917 JBrowse link
Q Bmd77 Bone mineral density QTL 77 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 3:28,136,728...51,687,917 JBrowse link
Q Bmd78 Bone mineral density QTL 78 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 5:150,360,936...167,946,134 JBrowse link
Q Bmd79 Bone mineral density QTL 79 IDA RGD PMID:19113924 RGD:2312767 NCBI chr 7:103,815,550...126,525,386 JBrowse link
Q Bmd80 Bone mineral density QTL 80 IDA RGD PMID:19113924 RGD:2312767 NCBI chr10:19,958,696...21,524,070 JBrowse link
Q Bmd81 Bone mineral density QTL 81 IDA RGD PMID:20699128 RGD:4889918 NCBI chr 3:39,773,247...51,687,917 JBrowse link
Q Bmd82 Bone mineral density QTL 82 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 2:60,325,352...106,432,915 JBrowse link
Q Bmd83 Bone mineral density QTL 82 IDA RGD PMID:21818327 RGD:5684953
Q Bmd84 Bone mineral density QTL 84 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 8:46,588,437...54,065,241 JBrowse link
Q Bmd85 Bone mineral density QTL 85 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 2:60,325,352...106,432,915 JBrowse link
Q Bmd86 Bone mineral density QTL 86 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 4:55,324,857...79,575,658 JBrowse link
Q Bmd87 Bone mineral density QTL 87 IDA RGD PMID:21818327 RGD:5684953 NCBI chr 4:55,324,857...79,575,658 JBrowse link
Q Bmd92 Bone mineral density QTL 92 IDA RGD PMID:27113531 RGD:11353859 NCBI chr 9:95,430,880...97,679,852 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  vertebrate trait 2379
    organism subdivision trait 180
      surface structure trait 180
        surface structure morphology trait 180
          appendage morphology trait 142
            limb morphology trait 142
              hindlimb morphology trait 136
                hindlimb long bone morphology trait 135
                  tibia morphology trait 56
                    tibia size trait 56
                      tibia area 14
                      tibia length 7
                      tibia mass + 20
                      tibia width 0
Path 2
Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      connective tissue trait 366
        connective tissue morphology trait 309
          bone morphology trait 163
            appendicular skeleton morphology trait 139
              skeleton extremities morphology trait 139
                long bone morphology trait 139
                  hindlimb long bone morphology trait 135
                    tibia morphology trait 56
                      tibia size trait 56
                        tibia area 14
                        tibia length 7
                        tibia mass + 20
                        tibia width 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.