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VERTEBRATE TRAIT ONTOLOGY - ANNOTATIONS

The Vertebrate Trait Ontology (VT) is being developed as a collaborative effort between the Rat Genome Database at the Medical College of Wisconsin (RGD, http://rgd.mcw.edu), Mouse Genome Informatics at the Jackson Laboratory (http://www.informatics.jax.org/) and the Animal QTL database at Iowa State University (http://www.animalgenome.org/cgi-bin/QTLdb/index). For more information about this vocabulary, or to request additions or changes, please contact us (http://rgd.mcw.edu/contact/index.shtml).

Term:integumentary system trait
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Accession:VT:1000775 term browser browse the term
Definition:Any measurable or observable characteristic of the system consisting of the skin and its derivatives.


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coat/hair pigmentation trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Coatc1 Coat color QTL1 IDA RGD PMID:19363126 RGD:2313383 NCBI chr14:20,189,386...65,189,386 JBrowse link
Q Coatc10 Coat color QTL 10 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:13,952,179...58,952,179 JBrowse link
Q Coatc11 Coat color QTL 11 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:24,731,465...69,731,465 JBrowse link
Q Coatc12 Coat color QTL 12 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:38,547,706...83,547,706 JBrowse link
Q Coatc13 Coat color QTL 13 IDA RGD PMID:26796131 RGD:10755346 NCBI chr13:77,694,986...114,033,958 JBrowse link
Q Coatc14 Coat color QTL 14 IDA RGD PMID:26796131 RGD:10755346 NCBI chr12:1...23,035,872 JBrowse link
Q Coatc15 Coat color QTL 15 IDA RGD PMID:26796131 RGD:10755346 NCBI chr14:21,457,565...66,457,565 JBrowse link
Q Coatc16 Coat color QTL 16 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 3:130,006,659...175,006,659 JBrowse link
Q Coatc2 Coat color QTL 2 IDA RGD PMID:20364790 RGD:2317982 NCBI chr14:33,039,912...61,783,215 JBrowse link
Q Coatc3 Coat color QTL 3 IDA RGD PMID:20364790 RGD:2317982 NCBI chr15:21,021,342...52,831,189 JBrowse link
Q Coatc4 Coat color QTL 4 IDA RGD PMID:20364790 RGD:2317982 NCBI chr17:3,336,972...24,030,841 JBrowse link
Q Coatc5 Coat color QTL 5 IDA RGD PMID:20364790 RGD:2317982 NCBI chr17:32,055,882...77,922,655 JBrowse link
Q Coatc6 Coat color QTL 6 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 2:10,555,275...55,555,275 JBrowse link
Q Coatc7 Coat color QTL 7 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 2:31,272,379...76,272,379 JBrowse link
Q Coatc8 Coat color QTL 8 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 2:35,133,202...80,133,202 JBrowse link
Q Coatc9 Coat color QTL 9 IDA RGD PMID:26796131 RGD:10755346 NCBI chr 7:9,758,045...54,758,045 JBrowse link
hypodermis integrity trait term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Cari1 Carrageenan-induced inflammation QTL 1 IDA RGD PMID:10087293 RGD:69693 NCBI chr10:55,678,976...112,626,471 JBrowse link
Q Cari2 Carrageenan-induced inflammation QTL 2 IDA RGD PMID:10087293 RGD:69693 NCBI chr 2:147,522,550...217,498,710 JBrowse link
subcutaneous adipose mass term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
Q Scfw1 Subcutaneous fat weight QTL 1 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 2:197,253,963...242,253,963 JBrowse link
Q Scfw2 Subcutaneous fat weight QTL 2 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 4:1...28,352,196 JBrowse link
Q Scfw3 Subcutaneous fat weight QTL 3 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 6:1...42,388,212 JBrowse link
Q Scfw4 Subcutaneous fat weight QTL 4 IDA RGD PMID:25003539 RGD:8694157
Q Scfw5 Subcutaneous fat weight QTL 5 IDA RGD PMID:25003539 RGD:8694157 NCBI chr 9:1...40,383,872 JBrowse link
Q Scfw6 Subcutaneous fat weight QTL 6 IDA RGD PMID:25003539 RGD:8694157

Term paths to the root
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Term Annotations click to browse term
  vertebrate trait 2379
    organ system trait 1548
      integumentary system trait 24
        integumentary system development trait + 0
        integumentary system morphology trait + 24
        integumentary system physiology trait + 0
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.