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Gene: Hoxa1 (homeobox A1) Rattus norvegicus
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Symbol: Hoxa1
Name: homeobox A1
Description: Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific; identical protein binding activity; and sequence-specific DNA binding activity. Predicted to be involved in several processes, including cellular response to retinoic acid; embryonic organ morphogenesis; and nervous system development. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in Athabaskan brainstem dysgenesis syndrome and autistic disorder. Orthologous to human HOXA1 (homeobox A1); INTERACTS WITH 17alpha-ethynylestradiol; 2,2',4,4'-Tetrabromodiphenyl ether; alendronic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: homeo box A1; homeobox A1-like; homeobox protein Hox-A1; Hoxa1l; NEWGENE_2812
Orthologs:
Homo sapiens (human) : HOXA1 (homeobox A1)  HGNC  Alliance
Mus musculus (house mouse) : Hoxa1 (homeobox A1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Hoxa1 (homeobox A1)
Pan paniscus (bonobo/pygmy chimpanzee) : HOXA1 (homeobox A1)
Canis lupus familiaris (dog) : HOXA1 (homeobox A1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Hoxa1 (homeobox A1)
Sus scrofa (pig) : HOXA1 (homeobox A1)
Chlorocebus sabaeus (African green monkey) : HOXA1 (homeobox A1)
Heterocephalus glaber (naked mole-rat) : Hoxa1 (homeobox A1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0482,124,358 - 82,127,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,125,406 - 82,127,066 (-)EnsemblRnor6.0rn6Rnor6.0
Celera476,147,124 - 76,149,948 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Hoxa1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 11414885
Created: 2016-08-02
Species: Rattus norvegicus
Last Modified: 2020-03-04
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.