EDA (ectodysplasin A) - Chinchilla Research Resource Database
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Gene: EDA (ectodysplasin A) Pan paniscus
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Symbol: EDA
Name: ectodysplasin A
CRRD ID: 11736349
Description: ENCODES a protein that exhibits death receptor agonist activity (ortholog); death receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell-matrix adhesion (ortholog); cytokine-mediated signaling pathway (ortholog); gene expression (ortholog); ASSOCIATED WITH anodontia (ortholog); autistic disorder (ortholog); craniofrontonasal syndrome (ortholog); FOUND IN apical part of cell (ortholog); endoplasmic reticulum membrane (ortholog); integral component of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ectodysplasin-A
Orthologs:
Homo sapiens (human) : EDA (ectodysplasin A)  HGNC  Alliance
Mus musculus (house mouse) : Eda (ectodysplasin-A)  MGI  Alliance
Rattus norvegicus (Norway rat) : Eda (ectodysplasin-A)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Eda (ectodysplasin A)
Canis lupus familiaris (dog) : EDA (ectodysplasin A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : LOC101956136 (ectodysplasin-A)
Sus scrofa (pig) : EDA (ectodysplasin A)
Chlorocebus sabaeus (African green monkey) : EDA (ectodysplasin A)
Heterocephalus glaber (naked mole-rat) : Eda (ectodysplasin A)
more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X68,946,036 - 69,371,175 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
EDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X68,946,036 - 69,371,175 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBIMhudiblu_PPA_v0panPan3
EDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX69,616,067 - 70,039,472 (+)EnsemblGRCh38hg38GRCh38
GRCh38X69,616,086 - 70,039,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X68,835,911 - 69,259,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X68,752,636 - 69,176,047 (+)NCBINCBI36hg18NCBI36
Build 34X68,618,931 - 69,042,340NCBI
CeleraX69,189,229 - 69,612,705 (+)NCBI
Cytogenetic MapXq13.1NCBI
HuRefX62,655,756 - 63,080,124 (+)NCBIHuRef
CHM1_1X68,729,282 - 69,152,930 (+)NCBICHM1_1
Eda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X99,019,212 - 99,444,366 (+)NCBI
GRCm38X99,975,606 - 100,400,760 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX99,975,606 - 100,400,762 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X97,170,945 - 97,596,099 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X82,816,290 - 83,239,228 (+)NCBImm8
MGSCv36X96,178,325 - 96,603,479 (+)NCBImm8
CeleraX86,912,424 - 87,326,326 (+)NCBICelera
Cytogenetic MapXC3NCBI
cM MapX43.59NCBI
Eda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X69,730,123 - 70,222,693 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX69,730,242 - 70,220,329 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X70,602,479 - 71,095,806 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X87,982,303 - 88,390,680 (+)NCBIRGSC3.4rn4RGSC3.4
CeleraX65,441,737 - 65,840,991 (+)NCBICelera
Cytogenetic MapXq22NCBI
Eda
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554759,178,234 - 9,588,440 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554759,177,911 - 9,592,150 (+)NCBIChiLan1.0ChiLan1.0
EDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX54,078,966 - 54,515,535 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X54,078,694 - 54,515,535 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LOC101956136
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367771,545,293 - 1,561,109 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX55,771,240 - 56,103,265 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X55,770,958 - 56,103,296 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X62,968,935 - 63,300,549 (+)NCBISscrofa10.2Sscrofa10.2susScr3
EDA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X59,453,157 - 59,861,555 (+)NCBI
Eda
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462489155,310 - 489,072 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_003816892   ⟹   XP_003816940
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X68,946,036 - 69,371,175 (+)NCBI
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969994   ⟹   XP_008968242
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X68,946,036 - 69,371,175 (+)NCBI
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008969995   ⟹   XP_008968243
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X68,946,036 - 69,371,175 (+)NCBI
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970000   ⟹   XP_008968248
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1X68,946,036 - 69,179,067 (+)NCBI
Mhudiblu_PPA_v0X58,881,660 - 59,114,964 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034950533   ⟹   XP_034806424
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0X58,881,660 - 59,308,451 (+)NCBI
RefSeq Acc Id: XM_034950534   ⟹   XP_034806425
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v0X58,881,660 - 59,131,434 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_008968242   ⟸   XM_008969994
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008968243   ⟸   XM_008969995
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003816940   ⟸   XM_003816892
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008968248   ⟸   XM_008970000
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_034806424   ⟸   XM_034950533
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034806425   ⟸   XM_034950534
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
NCBI Gene EDA ENTREZGENE