OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2) - Chinchilla Research Resource Database
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Gene: OGFOD2 (2-oxoglutarate and iron dependent oxygenase domain containing 2) Pan paniscus
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Symbol: OGFOD2
Name: 2-oxoglutarate and iron dependent oxygenase domain containing 2
CRRD ID: 11868533
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2
Orthologs:
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112124,815,874 - 124,821,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,815,870 - 124,821,224 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012120,581,092 - 120,586,538 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
OGFOD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112124,815,874 - 124,821,224 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,815,870 - 124,821,224 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012120,581,092 - 120,586,538 (+)NCBIMhudiblu_PPA_v0panPan3
OGFOD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12122,974,580 - 122,980,043 (+)EnsemblGRCh38hg38GRCh38
GRCh3812122,974,726 - 122,980,042 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712123,459,354 - 123,464,588 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612122,025,307 - 122,030,541 (+)NCBINCBI36hg18NCBI36
Celera12123,052,147 - 123,057,381 (+)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12120,420,494 - 120,425,728 (+)NCBIHuRef
CHM1_112123,427,568 - 123,432,906 (+)NCBICHM1_1
Ogfod2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,250,384 - 124,253,544 (+)NCBI
GRCm385124,112,321 - 124,115,482 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,112,297 - 124,115,483 (+)EnsemblGRCm38mm10GRCm38
MGSCv375124,562,347 - 124,565,485 (+)NCBIGRCm37mm9NCBIm37
MGSCv365124,372,956 - 124,376,094 (+)NCBImm8
Celera5121,188,479 - 121,191,617 (+)NCBICelera
Cytogenetic Map5FNCBI
Ogfod2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01237,907,130 - 37,910,446 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,907,130 - 37,910,439 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,779,493 - 39,782,802 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,606,538 - 33,609,847 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11233,470,506 - 33,473,221 (-)NCBI
Celera1234,170,636 - 34,173,945 (-)NCBICelera
Cytogenetic Map12q15NCBI
Ogfod2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,806,187 - 5,812,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,807,082 - 5,812,070 (-)NCBIChiLan1.0ChiLan1.0
OGFOD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl266,526,304 - 6,530,286 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1266,525,655 - 6,530,333 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ogfod2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365581,673,464 - 1,678,044 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OGFOD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,890,010 - 29,895,548 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,890,003 - 29,895,405 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,578,547 - 31,583,932 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OGFOD2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl11118,315,252 - 118,319,685 (+)Ensembl
ChlSab1.111118,314,648 - 118,320,082 (+)NCBI
Ogfod2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474722,975,884 - 22,980,145 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000001204   ⟹   ENSPPAP00000000337
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12124,815,870 - 124,820,632 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000001233   ⟹   ENSPPAP00000000345
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl12124,816,389 - 124,821,224 (+)Ensembl
RefSeq Acc Id: XM_003812126   ⟹   XP_003812174
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112124,816,389 - 124,821,224 (+)NCBI
Mhudiblu_PPA_v012120,581,658 - 120,586,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008964514   ⟹   XP_008962762
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112124,816,358 - 124,820,632 (+)NCBI
Mhudiblu_PPA_v012120,581,657 - 120,586,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008964515   ⟹   XP_008962763
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112124,815,874 - 124,820,632 (+)NCBI
Mhudiblu_PPA_v012120,581,160 - 120,586,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014347356   ⟹   XP_014202842
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112124,815,874 - 124,821,224 (+)NCBI
Mhudiblu_PPA_v012120,581,171 - 120,586,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014347357   ⟹   XP_014202843
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112124,815,917 - 124,821,224 (+)NCBI
Mhudiblu_PPA_v012120,581,171 - 120,586,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014347358   ⟹   XP_014202844
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.112124,815,874 - 124,821,224 (+)NCBI
Mhudiblu_PPA_v012120,581,171 - 120,586,538 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034934742   ⟹   XP_034790633
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v012120,581,092 - 120,586,538 (+)NCBI
RefSeq Acc Id: XM_034934743   ⟹   XP_034790634
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v012120,581,092 - 120,586,538 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_014202842   ⟸   XM_014347356
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_014202844   ⟸   XM_014347358
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008962763   ⟸   XM_008964515
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_014202843   ⟸   XM_014347357
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008962762   ⟸   XM_008964514
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_003812174   ⟸   XM_003812126
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034790634   ⟸   XM_034934743
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034790633   ⟸   XM_034934742
- Peptide Label: isoform X4
RefSeq Acc Id: ENSPPAP00000000337   ⟸   ENSPPAT00000001204
RefSeq Acc Id: ENSPPAP00000000345   ⟸   ENSPPAT00000001233
Protein Domains
Fe2OG dioxygenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000001068 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000000337 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000000345 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000001204 UniProtKB/TrEMBL
  ENSPPAT00000001233 UniProtKB/TrEMBL
InterPro Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/TrEMBL
KEGG Report pps:100984521 UniProtKB/TrEMBL
NCBI Gene OGFOD2 ENTREZGENE
PROSITE FE2OG_OXY UniProtKB/TrEMBL
SMART P4Hc UniProtKB/TrEMBL
UniProt A0A2R8Z6D3_PANPA UniProtKB/TrEMBL
  A0A2R8ZA56_PANPA UniProtKB/TrEMBL