GKAP1 (G kinase anchoring protein 1) - Chinchilla Research Resource Database

Gene: GKAP1 (G kinase anchoring protein 1) Pan paniscus

Analyze

Symbol:

GKAP1

Name:

G kinase anchoring protein 1

Description:

ENCODES a protein that exhibits identical protein binding (ortholog); kinase activity (ortholog); INVOLVED IN phosphorylation (ortholog); positive regulation of insulin receptor signaling pathway (ortholog); signal transduction (ortholog); FOUND IN Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Also known as:

G kinase-anchoring protein 1

Orthologs:

Homo sapiens (human) : GKAP1 (G kinase anchoring protein 1) HGNC Alliance
Mus musculus (house mouse) : Gkap1 (G kinase anchoring protein 1) MGI Alliance
Rattus norvegicus (Norway rat) : Gkap1 (G kinase anchoring protein 1) Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gkap1 (G kinase anchoring protein 1)
Canis lupus familiaris (dog) : GKAP1 (G kinase anchoring protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Gkap1 (G kinase anchoring protein 1)
Sus scrofa (pig) : GKAP1 (G kinase anchoring protein 1)

more info ...

Latest Assembly:

PanPan1.1 - Bonobo PanPan1.1 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	82,675,689 - 82,753,519 (-)	NCBI	panpan1.1	PanPan1.1
Bonobo Cytomap	9		NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene Ontology Annotations

Genomics

Comparative Map Data

GKAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	9	82,675,689 - 82,753,519 (-)	NCBI	panpan1.1	PanPan1.1
Bonobo Cytomap	9		NCBI

GKAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	83,739,421 - 83,817,837 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	9	86,354,336 - 86,444,431 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	85,544,156 - 85,622,477 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	9	83,583,891 - 83,662,211	NCBI
Celera	9	56,924,338 - 57,002,769 (-)	NCBI
Cytogenetic Map	9	q21.32	NCBI
HuRef	9	56,179,648 - 56,258,053 (-)	NCBI		HuRef
CHM1_1	9	86,501,068 - 86,579,457 (-)	NCBI		CHM1_1

Gkap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm38	13	58,233,346 - 58,274,877 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
MGSCv37	13	58,334,712 - 58,375,549 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	13	58,242,974 - 58,283,811 (-)	NCBI			mm8
Celera	13	59,295,562 - 59,336,387 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	30.97	NCBI

Gkap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	17	6,785,428 - 6,825,145 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	6,785,428 - 6,825,144 (+)	Ensembl
Rnor_5.0	17	8,989,135 - 9,028,904 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	12,315,255 - 12,355,040 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	17	12,315,254 - 12,355,039 (+)	NCBI
Celera	17	6,493,506 - 6,533,164 (+)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Gkap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955432	3,459,100 - 3,532,889 (+)	NCBI	ChiLan1.0	ChiLan1.0

GKAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	75,662,369 - 75,732,663 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog Cytomap	1		NCBI

Gkap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936828	632,729 - 686,763 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GKAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	10	31,141,799 - 31,230,967 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	35,228,961 - 35,317,629 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	10		NCBI

Expression

Sequence

Nucleotide Sequences

RefSeq Transcripts	XM_003810293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008962648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AJFE02031833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJFE02031834	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJFE02031835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AJFE02031836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

XM_003810293 ⟹ XP_003810341

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	9	82,675,689 - 82,753,519 (-)	NCBI

Sequence:

show sequence

ACTCGCACCCGACTCCCAGGCCGGCGACCGCTGAGCCTCCCGAGACCCCGTGGGGGCCGCTCGA
GTGACAGGTTTTGAAGCCGCTTCTCTGCCCGAGTTAGGTTTCGCCCAGCGCAATTTCTTTCTCT
ATGTACTTTGCGAATAAGTTTCGGAGCATCGGTTAACAGCCTATGGGTGAAATTTGGCTTTCAT
TCATGAATGAGAAATTATTCTTGACAGAAGTATTTTAAAAGAAAAATCTTTACGATGGCCTCAG
CAGTACTTAGTTCTGTTCCCACCACCGCTTCTCGTTTTGCCCTGTTACAAGTGGATAGTGGCAG
TGGCTCTGATTCTGAACCTGGAAAAGGTAAAGGTCGAAATACTGGAAAGTCTCAAACTTTAGGA
AGCAAGTCAACTACAAATGAGAAAAAAAGAGAGAAAAGAAGAAAAAAGAAGGAACAGCAACAGA
GTGAAGCAAATGAGCTCAGGAATCTTGCTTTTAAGAAAATTCCCCAGAAATCCTCCCATGCTGT
TTGTAACGCTCAACATGATCTTCCATTGTCAAACCCAGTACAGAAGGATTCACGAGAAGAAAAT
TGGCAAGAGTGGAGACAAAGAGATGAGCAGCTGACATCTGAAATGTTTGAAGCAGATCTTGAGA
AGGCATTGTTACTAAGTAAACTAGAATATGAAGAGCACAAAAAGGAGTATGAAGATGCTGAAAA
TACTTCAACTCAGTCCAAAGTTATGAATAAAAAAGATAAAAGAAAGAATCATCAGGGAAAAGAC
AGACCTCTCACAGTATCACTAAAAGATTTTCATTCGGAAGATCACATTAGTAAAAAGACTGAGG
AATTGAGTTCTTCTCAGACTTTATCACATGATGGAGGATTCTTCAATAGACTGGAAGATGATGT
TCATAAAATTCTTATTAGAGAAAAACGAAGAGAACAGCTTACAGAATATAATGGAACAGATAAT
TGTACAGCTCATGAACACAACCAGGAAGTGGTTCTGAAAGATGGAAGAATTGAAAGACTAAAGT
TAGAGCTTGAAAGGAAAGATGCTGAAATCCAGAAGCTGAAAAATGTAATCACTCAATGGGAGGC
AAAGTATAAGGAAGTAAAGGCAAGAAATGCACAATTATTGAAAATGCTTCAGGAAGGTGAAATG
AAAGATAAGGCAGAAATACTTCTGCAAGTTGATGAATCACAAAGTATCAAGAATGAGCTCACTA
TTCAGGTGACTTCACTTCATGCTGCATTAGAACAAGAAAGATCTAAAGTGAAAGTATTACAAGC
AGAGTTAGCCAAATACCAGGGTGGCAGAAAAGGGAAAAGAAACTCTGAATCCGACCAGTGTAGG
TGATTACATTAGCCTTTGAAGTCAACACAAAGTTTAAAACTTCCAGGATTTTGCAAAGTTGTAT
ATATTTAATGCTGTGCAACTGCTAAACTATGCAGTTTTTGTTGAAGGAACTAAAAGCAACTAGC
TCCCTAATGGTCTATAATTTTATTTCTTTTGGCTTAAAGTGAAAAAGAAGAAATAGAGAATTCC
AGCAGAATTCAGTGGTTGTCTACTGTCCATACTTCTTATCACTTTAGTTTTTCATCAGTCAATA
AAATTAATTTACTCTTCCACTAA

hide sequence

RefSeq Acc Id:

XM_008962648 ⟹ XP_008960896

RefSeq Status:

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1	9	82,675,689 - 82,753,519 (-)	NCBI

Sequence:

show sequence

ACTCGCACCCGACTCCCAGGCCGGCGACCGCTGAGCCTCCCGAGACCCCGTGGGGGCCGCTCGA
GTGACAGGTTTTGAAGCCGCTTCTCTGCCCGAGTTAGGTTTCGCCCAGCGCAATTTCTTTCTCT
ATGTACTTTGCGAATAAGTTTCGGAGCATCGGTTAACAGCCTATGGGTGAAATTTGGCTTTCAT
TCATGAATGAGAAATTATTCTTGACAGAAGTATTTTAAAAGAAAAATCTTTACGATGGCCTCAG
CAGTACTTAGTTCTGTTCCCACCACCGCTTCTCGTTTTGCCCTGTTACAAGTGGATAGTGGCAG
TGGCTCTGATTCTGAACCTGGAAAAGGTAAAGGTCGAAATACTGGAAAGTCTCAAACTTTAGGA
AGCAAGTCAACTACAAATGAGAAAAAAAGAGAGAAAAGAAGAAAAAAGAAGGAACAGCAACAGA
GTGAAGCAAATGAGCTCAGGAATCTTGCTTTTAAGAAAATTCCCCAGAAATCCTCCCATGCTGT
TTGTAACGCTCAACATGATCTTCCATTGTCAAACCCAGTACAGAAGGATTCACGAGAAGAAAAT
TGGCAAGAGTGGAGACAAAGAGATGAGCAGCTGACATCTGAAATGTTTGAAGCAGATCTTGAGA
AGGCATTGTTACTAAGTAAACTAGAATATGAAGAGCACAAAAAGGAGTATGAAGATGCTGAAAA
TACTTCAACTCAGTCCAAAGTTATGAATAAAAAAGATAAAAGAAAGAATCATCAGGGAAAAGAC
AGACCTCTCACAGTATCACTAAAAGATTTTCATTCGGAAGATCACATTAGTAAAAAGACTGAGG
AAGTGGTTCTGAAAGATGGAAGAATTGAAAGACTAAAGTTAGAGCTTGAAAGGAAAGATGCTGA
AATCCAGAAGCTGAAAAATGTAATCACTCAATGGGAGGCAAAGTATAAGGAAGTAAAGGCAAGA
AATGCACAATTATTGAAAATGCTTCAGGAAGGTGAAATGAAAGATAAGGCAGAAATACTTCTGC
AAGTTGATGAATCACAAAGTATCAAGAATGAGCTCACTATTCAGGTGACTTCACTTCATGCTGC
ATTAGAACAAGAAAGATCTAAAGTGAAAGTATTACAAGCAGAGTTAGCCAAATACCAGGGTGGC
AGAAAAGGGAAAAGAAACTCTGAATCCGACCAGTGTAGGTGATTACATTAGCCTTTGAAGTCAA
CACAAAGTTTAAAACTTCCAGGATTTTGCAAAGTTGTATATATTTAATGCTGTGCAACTGCTAA
ACTATGCAGTTTTTGTTGAAGGAACTAAAAGCAACTAGCTCCCTAATGGTCTATAATTTTATTT
CTTTTGGCTTAAAGTGAAAAAGAAGAAATAGAGAATTCCAGCAGAATTCAGTGGTTGTCTACTG
TCCATACTTCTTATCACTTTAGTTTTTCATCAGTCAATAAAATTAATTTACTCTTCCACTAA

hide sequence

Protein Sequences

Additional Information

External Database Links

More on GKAP1
	NCBI Gene
	Ensembl Gene
	NCBI Genome Data Viewer

CRRD Object Information
CRRD ID:	11905232
Created:	2017-01-20
Species:	Pan paniscus
Last Modified:	2019-11-26
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)