LOC100986481 (cytochrome c) - Chinchilla Research Resource Database
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Gene: LOC100986481 (cytochrome c) Pan paniscus
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Symbol: LOC100986481
Name: cytochrome c
CRRD ID: 11911232
Description: ENCODES a protein that exhibits electron transporter, transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity (ortholog); enzyme binding (ortholog); heme binding (ortholog); INVOLVED IN activation of cysteine-type endopeptidase activity involved in apoptotic process by cytochrome c (ortholog); apoptotic process (ortholog); glial cell apoptotic process (ortholog); PARTICIPATES IN cardiolipin metabolic pathway; ceramide signaling pathway; electron transport chain pathway; ASSOCIATED WITH brain ischemia (ortholog); Chloracne (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial intermembrane space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CYCS; cytochrome c, somatic
Orthologs:
Homo sapiens (human) : CYCS (cytochrome c, somatic)  HGNC  Alliance
Mus musculus (house mouse) : Cycs (cytochrome c, somatic)  MGI  Alliance
Rattus norvegicus (Norway rat) : Cycs (cytochrome c, somatic)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102023786 (cytochrome c, somatic)
Canis lupus familiaris (dog) : CYCS (cytochrome c, somatic)
Sus scrofa (pig) : CYCS (cytochrome c, somatic)
Heterocephalus glaber (naked mole-rat) : LOC101718508 (cytochrome c, somatic)
more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1725,396,013 - 25,398,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl725,396,013 - 25,398,549 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0725,784,900 - 25,791,598 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22028846  


Genomics

Comparative Map Data
LOC100986481
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1725,396,013 - 25,398,549 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl725,396,013 - 25,398,549 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0725,784,900 - 25,791,598 (-)NCBIMhudiblu_PPA_v0panPan3
CYCS
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl725,118,656 - 25,125,260 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl725,120,091 - 25,125,361 (-)EnsemblGRCh38hg38GRCh38
GRCh38725,118,656 - 25,125,260 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37725,158,270 - 25,164,980 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36725,124,800 - 25,131,480 (-)NCBINCBI36hg18NCBI36
Celera725,146,921 - 25,154,374 (-)NCBI
Cytogenetic Map7p15.3NCBI
HuRef725,044,828 - 25,051,539 (-)NCBIHuRef
CHM1_1725,160,181 - 25,166,894 (-)NCBICHM1_1
CRA_TCAGchr7v2725,209,510 - 25,216,457 (-)NCBI
Cycs
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39650,539,543 - 50,543,549 (-)NCBI
GRCm38650,562,563 - 50,566,569 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl650,562,563 - 50,566,538 (-)EnsemblGRCm38mm10GRCm38
MGSCv37650,512,562 - 50,516,473 (-)NCBIGRCm37mm9NCBIm37
MGSCv36650,492,149 - 50,496,060 (-)NCBImm8
Celera651,079,647 - 51,083,558 (-)NCBICelera
Cytogenetic Map6B2.3NCBI
cM Map624.32NCBI
Cycs
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0480,331,226 - 80,333,326 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl480,331,227 - 80,333,326 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04145,002,156 - 145,004,256 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4478,825,878 - 78,827,978 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1479,102,008 - 79,104,108 (-)NCBI
Celera474,558,589 - 74,560,689 (-)NCBICelera
Cytogenetic Map4q24NCBI
LOC102023786
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541027,086,405 - 27,089,255 (-)NCBIChiLan1.0ChiLan1.0
CYCS
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1438,579,446 - 38,581,983 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11438,579,446 - 38,581,983 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CYCS
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1847,169,866 - 47,173,866 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11847,169,921 - 47,172,212 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21852,036,068 - 52,038,366 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101718508
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247395,411,192 - 5,413,995 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000018776   ⟹   ENSPPAP00000004039
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl725,396,013 - 25,398,549 (-)Ensembl
RefSeq Acc Id: XM_003807922   ⟹   XP_003807970
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1725,396,013 - 25,398,549 (-)NCBI
Mhudiblu_PPA_v0725,784,900 - 25,791,598 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003807970 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEP27190 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003807970   ⟸   XM_003807922
- UniProtKB: G4XXM0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000004039   ⟸   ENSPPAT00000018776
Protein Domains
Cytochrome c


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000017160 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000004039 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000018776 UniProtKB/TrEMBL
Gene3D-CATH 1.10.760.10 UniProtKB/TrEMBL
InterPro Cyt_c-like_dom UniProtKB/TrEMBL
  Cyt_c-like_dom_sf UniProtKB/TrEMBL
  Cyt_c_1A/1B UniProtKB/TrEMBL
KEGG Report pps:100986481 UniProtKB/TrEMBL
NCBI Gene LOC100986481 ENTREZGENE
PANTHER PTHR11961 UniProtKB/TrEMBL
Pfam Cytochrom_C UniProtKB/TrEMBL
PRINTS CYTCHRMECIAB UniProtKB/TrEMBL
PROSITE CYTC UniProtKB/TrEMBL
Superfamily-SCOP SSF46626 UniProtKB/TrEMBL
UniProt G4XXM0 ENTREZGENE, UniProtKB/TrEMBL