B4GALT1 (beta-1,4-galactosyltransferase 1) - Chinchilla Research Resource Database
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Gene: B4GALT1 (beta-1,4-galactosyltransferase 1) Pan paniscus
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Symbol: B4GALT1
Name: beta-1,4-galactosyltransferase 1
CRRD ID: 12008997
Description: ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (ortholog); beta-tubulin binding (ortholog); INVOLVED IN acute inflammatory response (ortholog); angiogenesis involved in wound healing (ortholog); binding of sperm to zona pellucida (ortholog); PARTICIPATES IN galactose metabolic pathway; galactosemia pathway; Glut1 deficiency syndrome pathway; ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IId (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border membrane (ortholog); cell surface (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Homo sapiens (human) : B4GALT1 (beta-1,4-galactosyltransferase 1)  HGNC  Alliance
Mus musculus (house mouse) : B4galt1 (UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1)  MGI  Alliance
Rattus norvegicus (Norway rat) : B4galt1 (beta-1,4-galactosyltransferase 1)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : B4galt1 (beta-1,4-galactosyltransferase 1)
Canis lupus familiaris (dog) : B4GALT1 (beta-1,4-galactosyltransferase 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : B4galt1 (beta-1,4-galactosyltransferase 1)
Sus scrofa (pig) : B4GALT1 (beta-1,4-galactosyltransferase 1)
Chlorocebus sabaeus (African green monkey) : B4GALT1 (beta-1,4-galactosyltransferase 1)
Heterocephalus glaber (naked mole-rat) : B4galt1 (beta-1,4-galactosyltransferase 1)
more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1933,697,551 - 33,754,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,691,733 - 33,754,192 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View


Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
B4GALT1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1933,697,551 - 33,754,192 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl933,691,733 - 33,754,192 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBI
B4GALT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl933,104,082 - 33,167,356 (-)EnsemblGRCh38hg38GRCh38
GRCh38933,104,077 - 33,167,336 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37933,110,636 - 33,167,356 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36933,100,642 - 33,157,236 (-)NCBINCBI36hg18NCBI36
Build 34933,100,641 - 33,157,231NCBI
Celera933,041,647 - 33,098,362 (-)NCBI
Cytogenetic Map9p21.1NCBI
HuRef933,068,632 - 33,125,120 (-)NCBIHuRef
CHM1_1933,110,422 - 33,167,124 (-)NCBICHM1_1
B4galt1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39440,804,602 - 40,855,711 (-)NCBI
GRCm38440,804,602 - 40,853,984 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl440,804,602 - 40,854,005 (-)EnsemblGRCm38mm10GRCm38
MGSCv37440,751,635 - 40,801,031 (-)NCBIGRCm37mm9NCBIm37
MGSCv36440,993,273 - 41,042,669 (-)NCBImm8
Celera440,465,334 - 40,514,995 (-)NCBICelera
Cytogenetic Map4A5NCBI
cM Map420.46NCBI
B4galt1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0557,121,768 - 57,168,610 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl557,121,769 - 57,168,610 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0561,653,278 - 61,700,179 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4558,196,388 - 58,243,231 (-)NCBIRGSC3.4rn4RGSC3.4
Celera554,547,735 - 54,594,543 (-)NCBICelera
Cytogenetic Map5q22NCBI
B4galt1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554722,490,661 - 2,536,317 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554722,490,649 - 2,536,053 (+)NCBIChiLan1.0ChiLan1.0
B4GALT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1150,226,242 - 50,276,730 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11150,223,880 - 50,276,745 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
B4galt1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365241,659,791 - 1,713,971 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
B4GALT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1033,317,305 - 33,381,289 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11033,317,295 - 33,381,285 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21037,574,201 - 37,635,284 (+)NCBISscrofa10.2Sscrofa10.2susScr3
B4GALT1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1247,104,789 - 47,162,173 (+)Ensembl
ChlSab1.11247,104,750 - 47,162,157 (+)NCBI
B4galt1
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003830118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_003830118   ⟹   XP_003830166
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1933,697,551 - 33,754,192 (-)NCBI
Mhudiblu_PPA_v0932,889,124 - 32,945,759 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003830166 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003830166   ⟸   XM_003830118
- Sequence:
Protein Domains
Glyco_transf_7C   Glyco_transf_7N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038905 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000031998 UniProtKB/TrEMBL
  ENSPPAP00000032007 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000032016 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054864 UniProtKB/TrEMBL
  ENSPPAT00000054873 UniProtKB/TrEMBL
  ENSPPAT00000054882 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Galactosyl_T UniProtKB/TrEMBL
  Galactosyl_T_C UniProtKB/TrEMBL
  Galactosyl_T_N UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
KEGG Report pps:100974756 UniProtKB/TrEMBL
NCBI Gene B4GALT1 ENTREZGENE
PANTHER PTHR19300 UniProtKB/TrEMBL
Pfam Glyco_transf_7C UniProtKB/TrEMBL
  Glyco_transf_7N UniProtKB/TrEMBL
PRINTS B14GALTRFASE UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt A0A2R9BQS0_PANPA UniProtKB/TrEMBL
  A0A2R9BQS2_PANPA UniProtKB/TrEMBL
  A0A2R9BZS7_PANPA UniProtKB/TrEMBL

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.