CDH3 (cadherin 3) - Chinchilla Research Resource Database
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Gene: CDH3 (cadherin 3) Pan paniscus
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Symbol: CDH3
Name: cadherin 3
CRRD ID: 12016592
Description: INVOLVED IN cell-cell adhesion (ortholog); hair cycle process (ortholog); keratinization (ortholog); ASSOCIATED WITH congenital hypotrichosis with juvenile macular dystrophy (ortholog); ectodermal dysplasia, ectrodactyly, and macular dystrophy syndrome (ortholog); fundus dystrophy (ortholog); FOUND IN adherens junction (ortholog); cell junction (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: cadherin-3
Orthologs:
Homo sapiens (human) : CDH3 (cadherin 3)  HGNC  Alliance
Mus musculus (house mouse) : Cdh3 (cadherin 3)  MGI  Alliance
Rattus norvegicus (Norway rat) : Cdh3 (cadherin 3)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Cdh3 (cadherin 3)
Canis lupus familiaris (dog) : CDH3 (cadherin 3)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Cdh3 (cadherin 3)
Sus scrofa (pig) : CDH3 (cadherin 3)
Chlorocebus sabaeus (African green monkey) : CDH3 (cadherin 3)
Heterocephalus glaber (naked mole-rat) : Cdh3 (cadherin 3)
more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11668,408,078 - 68,465,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,407,625 - 68,465,287 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01649,015,115 - 49,071,903 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
CDH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11668,408,078 - 68,465,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,407,625 - 68,465,287 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01649,015,115 - 49,071,903 (+)NCBIMhudiblu_PPA_v0panPan3
CDH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1668,636,189 - 68,722,616 (+)EnsemblGRCh38hg38GRCh38
GRCh381668,644,914 - 68,727,573 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371668,678,151 - 68,732,959 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,236,277 - 67,290,443 (+)NCBINCBI36hg18NCBI36
Build 341667,236,276 - 67,290,442NCBI
Celera1653,187,169 - 53,242,286 (+)NCBI
Cytogenetic Map16q22.1NCBI
HuRef1654,551,120 - 54,605,916 (+)NCBIHuRef
CHM1_11670,086,950 - 70,141,070 (+)NCBICHM1_1
Cdh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,237,484 - 107,283,543 (+)NCBI
GRCm388106,510,852 - 106,556,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,510,891 - 106,557,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv378109,034,791 - 109,080,808 (+)NCBIGRCm37mm9NCBIm37
MGSCv368109,400,020 - 109,446,037 (+)NCBImm8
Celera8110,734,945 - 110,781,298 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.16NCBI
Cdh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01938,668,957 - 38,719,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,669,230 - 38,719,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,536,859 - 49,587,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,343,823 - 36,393,819 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11936,395,654 - 36,397,989 (+)NCBI
Celera1933,820,490 - 33,870,862 (+)NCBICelera
Cytogenetic Map19q12NCBI
Cdh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,938,495 - 7,986,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,937,847 - 7,985,418 (-)NCBIChiLan1.0ChiLan1.0
CDH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl580,863,661 - 80,913,019 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1580,864,859 - 80,912,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Cdh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647518,908,031 - 18,954,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,191,664 - 18,235,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,190,971 - 18,236,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,844,456 - 16,853,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl558,717,597 - 58,775,339 (-)Ensembl
ChlSab1.1558,717,600 - 58,775,033 (-)NCBI
Cdh3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474617,616,296 - 17,659,021 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003814561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide SSBP01000338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000054437   ⟹   ENSPPAP00000031572
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1668,407,625 - 68,465,287 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000054440   ⟹   ENSPPAP00000031575
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1668,408,756 - 68,464,411 (+)Ensembl
RefSeq Acc Id: XM_003814561   ⟹   XP_003814609
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11668,408,078 - 68,465,287 (+)NCBI
Mhudiblu_PPA_v01649,015,115 - 49,071,903 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003814609 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003814609   ⟸   XM_003814561
- Sequence:
RefSeq Acc Id: ENSPPAP00000031575   ⟸   ENSPPAT00000054440
RefSeq Acc Id: ENSPPAP00000031572   ⟸   ENSPPAT00000054437
Protein Domains
CA   Cadherin_pro


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000038719 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000031572 ENTREZGENE, UniProtKB/TrEMBL
  ENSPPAP00000031575 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000054437 UniProtKB/TrEMBL
  ENSPPAT00000054440 UniProtKB/TrEMBL
Gene3D-CATH 4.10.900.10 UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_cytoplasmic-dom UniProtKB/TrEMBL
  Cadherin_pro_dom UniProtKB/TrEMBL
  Catenin_binding_dom_sf UniProtKB/TrEMBL
KEGG Report pps:100982523 UniProtKB/TrEMBL
NCBI Gene CDH3 ENTREZGENE
PANTHER PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_C UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
SMART Cadherin_pro UniProtKB/TrEMBL
  SM00112 UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
UniProt A0A2R9BPH9_PANPA UniProtKB/TrEMBL
  A0A2R9BYH8_PANPA UniProtKB/TrEMBL