KCNC4 (potassium voltage-gated channel subfamily C member 4) - Chinchilla Research Resource Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: KCNC4 (potassium voltage-gated channel subfamily C member 4) Pan paniscus
Analyze
Symbol: KCNC4
Name: potassium voltage-gated channel subfamily C member 4
CRRD ID: 12018879
Description: ENCODES a protein that exhibits voltage-gated ion channel activity involved in regulation of postsynaptic membrane potential (ortholog); voltage-gated ion channel activity involved in regulation of presynaptic membrane potential (ortholog); INVOLVED IN forebrain development (ortholog); negative regulation of neuronal action potential (ortholog); negative regulation of sensory perception of pain (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autistic disorder (ortholog); Hyperalgesia (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); calyx of Held (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: potassium voltage-gated channel, Shaw-related subfamily, member 4
Orthologs:
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11127,457,895 - 127,480,954 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,458,968 - 127,480,182 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
KCNC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11127,457,895 - 127,480,954 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1127,458,968 - 127,480,182 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBIMhudiblu_PPA_v0panPan3
KCNC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1110,210,314 - 110,283,100 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1110,211,343 - 110,283,100 (+)EnsemblGRCh38hg38GRCh38
GRCh381110,210,314 - 110,282,649 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371110,753,336 - 110,776,674 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361110,555,588 - 110,578,189 (+)NCBINCBI36hg18NCBI36
Build 341110,466,018 - 110,478,710NCBI
Celera1109,000,516 - 109,023,855 (+)NCBI
Cytogenetic Map1p13.3NCBI
HuRef1108,625,031 - 108,648,390 (+)NCBIHuRef
CHM1_11110,868,669 - 110,892,012 (+)NCBICHM1_1
Kcnc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393107,345,614 - 107,367,617 (-)NCBI
GRCm383107,438,298 - 107,460,287 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3107,438,303 - 107,459,552 (-)EnsemblGRCm38mm10GRCm38
MGSCv373107,241,221 - 107,261,816 (-)NCBIGRCm37mm9NCBIm37
MGSCv363107,566,359 - 107,586,954 (-)NCBImm8
Celera3109,770,042 - 109,791,022 (-)NCBICelera
Cytogenetic Map3F2.3NCBI
cM Map346.83NCBI
Kcnc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.02210,220,908 - 210,241,447 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2210,220,908 - 210,241,455 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02229,694,932 - 229,732,890 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2187,727,839 - 187,748,108 (-)NCBICelera
Cytogenetic Map2q34NCBI
Kcnc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543513,728,708 - 13,750,660 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543513,728,272 - 13,750,420 (+)NCBIChiLan1.0ChiLan1.0
KCNC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl641,738,653 - 41,764,578 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1641,743,214 - 41,764,572 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Kcnc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049367041,667,387 - 1,689,337 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KCNC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4109,885,116 - 109,908,476 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14109,885,116 - 109,908,518 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24120,280,838 - 120,310,013 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KCNC4
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2023,304,679 - 23,327,382 (-)Ensembl
ChlSab1.12023,241,279 - 23,328,175 (-)NCBI
Kcnc4
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247725,967,042 - 6,004,647 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000039275   ⟹   ENSPPAP00000016578
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,458,968 - 127,480,182 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039280   ⟹   ENSPPAP00000016583
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,459,036 - 127,480,182 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000039284   ⟹   ENSPPAP00000016587
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1127,459,631 - 127,480,182 (-)Ensembl
RefSeq Acc Id: XM_014346824   ⟹   XP_014202310
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11127,457,895 - 127,480,954 (-)NCBI
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_014346825   ⟹   XP_014202311
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11127,457,895 - 127,480,954 (-)NCBI
Mhudiblu_PPA_v01112,860,947 - 112,884,687 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034933302   ⟹   XP_034789193
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBI
RefSeq Acc Id: XM_034933305   ⟹   XP_034789196
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBI
RefSeq Acc Id: XM_034933311   ⟹   XP_034789202
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBI
RefSeq Acc Id: XM_034933315   ⟹   XP_034789206
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
Mhudiblu_PPA_v01112,860,887 - 112,882,853 (+)NCBI
RefSeq Acc Id: XR_001338625
RefSeq Status:
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.11127,457,895 - 127,480,954 (-)NCBI
Mhudiblu_PPA_v01112,860,887 - 112,884,687 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_014202311   ⟸   XM_014346825
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_014202310   ⟸   XM_014346824
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_034789202   ⟸   XM_034933311
- Peptide Label: isoform X4
RefSeq Acc Id: XP_034789193   ⟸   XM_034933302
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034789196   ⟸   XM_034933305
- Peptide Label: isoform X3
RefSeq Acc Id: XP_034789206   ⟸   XM_034933315
- Peptide Label: isoform X5
RefSeq Acc Id: ENSPPAP00000016587   ⟸   ENSPPAT00000039284
RefSeq Acc Id: ENSPPAP00000016583   ⟸   ENSPPAT00000039280
RefSeq Acc Id: ENSPPAP00000016578   ⟸   ENSPPAT00000039275
Protein Domains
Ion_trans   Potassium_chann


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031411 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000016578 UniProtKB/TrEMBL
  ENSPPAP00000016583 UniProtKB/TrEMBL
  ENSPPAP00000016587 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000039275 UniProtKB/TrEMBL
  ENSPPAT00000039280 UniProtKB/TrEMBL
  ENSPPAT00000039284 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.350 UniProtKB/TrEMBL
InterPro Ion_trans_dom UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv3 UniProtKB/TrEMBL
  K_chnl_volt-dep_Kv3_ID UniProtKB/TrEMBL
  VG_K_chnl UniProtKB/TrEMBL
  Volt_channel_dom_sf UniProtKB/TrEMBL
NCBI Gene KCNC4 ENTREZGENE
PANTHER PTHR11537 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  Potassium_chann UniProtKB/TrEMBL
PRINTS KVCHANNEL UniProtKB/TrEMBL
  SHAWCHANNEL UniProtKB/TrEMBL
UniProt A0A2R9AGW2_PANPA UniProtKB/TrEMBL
  A0A2R9AHT3_PANPA UniProtKB/TrEMBL
  A0A2R9AHT6_PANPA UniProtKB/TrEMBL