TTC39C (tetratricopeptide repeat domain 39C) - Chinchilla Research Resource Database
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Gene: TTC39C (tetratricopeptide repeat domain 39C) Canis lupus familiaris
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Symbol: TTC39C
Name: tetratricopeptide repeat domain 39C
CRRD ID: 12063313
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: tetratricopeptide repeat protein 39C
Orthologs:
Homo sapiens (human) : TTC39C (tetratricopeptide repeat domain 39C)  HGNC  Alliance
Mus musculus (house mouse) : Ttc39c (tetratricopeptide repeat domain 39C)  MGI  Alliance
Rattus norvegicus (Norway rat) : Ttc39c (tetratricopeptide repeat domain 39C)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ttc39c (tetratricopeptide repeat domain 39C)
Pan paniscus (bonobo/pygmy chimpanzee) : TTC39C (tetratricopeptide repeat domain 39C)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ttc39c (tetratricopeptide repeat domain 39C)
Sus scrofa (pig) : TTC39C (tetratricopeptide repeat domain 39C)
Chlorocebus sabaeus (African green monkey) : TTC39C (tetratricopeptide repeat domain 39C)
Heterocephalus glaber (naked mole-rat) : Ttc39c (tetratricopeptide repeat domain 39C)
more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl764,244,716 - 64,306,941 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1764,242,157 - 64,306,963 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
TTC39C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl764,244,716 - 64,306,941 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1764,242,157 - 64,306,963 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
TTC39C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1823,992,773 - 24,135,610 (+)EnsemblGRCh38hg38GRCh38
GRCh381823,992,843 - 24,135,970 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371821,572,737 - 21,715,574 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,826,735 - 19,966,989 (+)NCBINCBI36hg18NCBI36
Build 341819,826,734 - 19,966,989NCBI
Celera1818,389,024 - 18,531,881 (+)NCBI
Cytogenetic Map18q11.2NCBI
HuRef1818,428,343 - 18,571,622 (+)NCBIHuRef
CHM1_11821,500,022 - 21,642,837 (+)NCBICHM1_1
Ttc39c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,716,168 - 12,872,461 (+)NCBI
GRCm381812,583,103 - 12,739,404 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1812,599,896 - 12,738,863 (+)EnsemblGRCm38mm10GRCm38
MGSCv371812,802,042 - 12,895,561 (+)NCBIGRCm37mm9NCBIm37
MGSCv361812,786,969 - 12,880,220 (+)NCBImm8
Celera1812,875,724 - 12,968,842 (+)NCBICelera
Cytogenetic Map18A1NCBI
Ttc39c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0183,958,424 - 4,080,028 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,958,432 - 4,080,025 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,955,997 - 4,074,160 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera183,824,032 - 3,943,341 (+)NCBICelera
Cytogenetic Map18p13NCBI
Ttc39c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540212,408,853 - 12,503,273 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540212,408,853 - 12,503,273 (+)NCBIChiLan1.0ChiLan1.0
TTC39C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11820,891,504 - 21,011,248 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,891,500 - 21,011,248 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01817,267,608 - 17,388,826 (+)NCBIMhudiblu_PPA_v0panPan3
Ttc39c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365503,408,768 - 3,513,987 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TTC39C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,860,322 - 108,968,678 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,859,792 - 108,968,236 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26101,523,638 - 101,632,260 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TTC39C
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1856,399,489 - 56,520,504 (-)Ensembl
ChlSab1.11856,397,867 - 56,542,331 (-)NCBI
Ttc39c
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247708,086,597 - 8,189,139 (-)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 15 6 5 6 6 12
Low 1 4 7 1 4 8 10 6
Below cutoff 1 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_537296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX03005450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSCAFT00000028858   ⟹   ENSCAFP00000026836
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl764,244,716 - 64,306,941 (-)Ensembl
RefSeq Acc Id: XM_537296   ⟹   XP_537296
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1764,242,157 - 64,306,963 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_537296 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_537296   ⟸   XM_537296
- UniProtKB: E2RA65 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000026836   ⟸   ENSCAFT00000028858


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018168 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000026836 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000028858 ENTREZGENE, UniProtKB/TrEMBL
InterPro OMP_Iml2/TPR_39 UniProtKB/TrEMBL
  TPR-like_helical_dom UniProtKB/TrEMBL
NCBI Gene TTC39C ENTREZGENE
PANTHER PTHR31859 UniProtKB/TrEMBL
Pfam DUF3808 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
UniProt E2RA65 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47958 ENTREZGENE