SEH1L (SEH1 like nucleoporin) - Chinchilla Research Resource Database
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Gene: SEH1L (SEH1 like nucleoporin) Canis lupus familiaris
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Symbol: SEH1L
Name: SEH1 like nucleoporin
CRRD ID: 12329103
Description: ENCODES a protein that exhibits phosphatase binding (inferred); structural molecule activity (inferred); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); cellular protein-containing complex localization (ortholog); cellular response to amino acid starvation (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH tooth agenesis (ortholog); FOUND IN GATOR2 complex (ortholog); kinetochore (ortholog); nuclear pore outer ring (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nucleoporin SEH1; SEH1-like
Orthologs:
Homo sapiens (human) : SEH1L (SEH1 like nucleoporin)  HGNC  Alliance
Mus musculus (house mouse) : Seh1l (SEH1-like (S. cerevisiae)  MGI  Alliance
Rattus norvegicus (Norway rat) : Seh1l (SEH1-like nucleoporin)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Seh1l (SEH1 like nucleoporin)
Pan paniscus (bonobo/pygmy chimpanzee) : SEH1L (SEH1 like nucleoporin)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Seh1l (SEH1 like nucleoporin)
Chlorocebus sabaeus (African green monkey) : SEH1L (SEH1 like nucleoporin)
Heterocephalus glaber (naked mole-rat) : Seh1l (SEH1 like nucleoporin)
more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl778,351,992 - 78,541,669 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1778,352,153 - 78,383,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View


Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
SEH1L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl778,351,992 - 78,541,669 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1778,352,153 - 78,383,546 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
SEH1L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1812,947,133 - 12,987,536 (+)EnsemblGRCh38hg38GRCh38
GRCh381812,947,988 - 12,987,665 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371812,947,983 - 12,987,536 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361812,937,983 - 12,977,535 (+)NCBINCBI36hg18NCBI36
Build 341812,938,014 - 12,977,533NCBI
Celera1812,830,517 - 12,870,069 (+)NCBI
Cytogenetic Map18p11.21NCBI
HuRef1812,901,806 - 12,941,359 (+)NCBIHuRef
CHM1_11812,947,369 - 12,987,144 (+)NCBICHM1_1
Seh1l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391867,907,946 - 67,928,557 (+)NCBI
GRCm381867,774,876 - 67,795,487 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1867,774,876 - 67,795,487 (+)EnsemblGRCm38mm10GRCm38
MGSCv371867,934,530 - 67,955,141 (+)NCBIGRCm37mm9NCBIm37
MGSCv361867,900,245 - 67,920,856 (+)NCBImm8
Celera1869,058,356 - 69,079,030 (+)NCBICelera
Cytogenetic Map18E1NCBI
Seh1l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01863,545,150 - 63,568,101 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01862,724,436 - 62,747,387 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1859,450,531 - 59,473,483 (+)NCBICelera
Cytogenetic Map18q12.1NCBI
Seh1l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955402681,436 - 698,624 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955402679,109 - 698,624 (-)NCBIChiLan1.0ChiLan1.0
SEH1L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11816,464,446 - 16,500,693 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1816,464,446 - 16,500,693 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0181,342,928 - 1,379,719 (-)NCBI
Seh1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366262,538,655 - 2,562,468 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEH1L
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1871,453,972 - 71,491,808 (+)Ensembl
ChlSab1.11871,453,924 - 71,492,289 (+)NCBI
Seh1l
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_547686   ⟹   XP_547686
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1778,352,153 - 78,383,546 (+)NCBI
Sequence:
RefSeq Acc Id: XM_855633   ⟹   XP_860726
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1778,352,155 - 78,381,746 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_547686 (Get FASTA)   NCBI Sequence Viewer  
  XP_860726 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_547686   ⟸   XM_547686
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_860726   ⟸   XM_855633
- Peptide Label: isoform X2
- Sequence:
Protein Domains
WD_REPEATS_REGION

Promoters
RGD ID:13684116
Promoter ID:EPDNEW_C2184
Type:initiation region
Name:CEP192_1
Description:centrosomal protein 192
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1778,352,285 - 78,352,345EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000018880 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCAFP00000027838 UniProtKB/TrEMBL
  ENSCAFP00000043521 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000044543 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFP00000046861 UniProtKB/TrEMBL
  ENSCAFP00000047122 UniProtKB/TrEMBL
  ENSCAFP00000048436 UniProtKB/TrEMBL
  ENSCAFP00000055481 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000029956 UniProtKB/TrEMBL
  ENSCAFT00000059990 UniProtKB/TrEMBL
  ENSCAFT00000062407 UniProtKB/TrEMBL
  ENSCAFT00000076611 UniProtKB/TrEMBL
  ENSCAFT00000079382 UniProtKB/TrEMBL
  ENSCAFT00000083156 ENTREZGENE, UniProtKB/TrEMBL
  ENSCAFT00000088547 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro G-protein_beta_WD-40_rep UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Nucleoporin_Seh1 UniProtKB/TrEMBL
  Sec13/Seh1_fam UniProtKB/TrEMBL
  Spd-2/CEP192 UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom_sf UniProtKB/TrEMBL
  WD40_repeat UniProtKB/TrEMBL
  WD40_repeat_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
NCBI Gene SEH1L ENTREZGENE
PANTHER PTHR11024 UniProtKB/TrEMBL
  PTHR11024:SF3 UniProtKB/TrEMBL
  PTHR16029 UniProtKB/TrEMBL
Pfam WD40 UniProtKB/TrEMBL
PRINTS GPROTEINBRPT UniProtKB/TrEMBL
PROSITE WD_REPEATS_2 UniProtKB/TrEMBL
  WD_REPEATS_REGION UniProtKB/TrEMBL
SMART WD40 UniProtKB/TrEMBL
Superfamily-SCOP SSF50978 UniProtKB/TrEMBL
UniProt A0A5F4BRD2_CANLF UniProtKB/TrEMBL
  A0A5F4BRT4_CANLF UniProtKB/TrEMBL
  A0A5F4BY99_CANLF UniProtKB/TrEMBL
  A0A5F4C0J5_CANLF UniProtKB/TrEMBL
  A0A5F4C2I7_CANLF UniProtKB/TrEMBL
  A0A5F4CRS1_CANLF UniProtKB/TrEMBL
  F6Y0J3_CANLF UniProtKB/TrEMBL

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.