LAMA5 (laminin subunit alpha 5) - Chinchilla Research Resource Database
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Gene: LAMA5 (laminin subunit alpha 5) Canis lupus familiaris
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Symbol: LAMA5
Name: laminin subunit alpha 5
CRRD ID: 12334812
Description: ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); branching involved in salivary gland morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH benign familial hematuria (ortholog); Dwarfism (ortholog); High Myopia (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular space (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: laminin subunit alpha-5; LOW QUALITY PROTEIN: laminin subunit alpha-5
Orthologs:
Homo sapiens (human) : LAMA5 (laminin subunit alpha 5)  HGNC  Alliance
Mus musculus (house mouse) : Lama5 (laminin, alpha 5)  MGI  Alliance
Rattus norvegicus (Norway rat) : Lama5 (laminin subunit alpha 5)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Lama5 (laminin subunit alpha 5)
Pan paniscus (bonobo/pygmy chimpanzee) : LAMA5 (laminin subunit alpha 5)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Lama5 (laminin subunit alpha 5)
Sus scrofa (pig) : LAMA5 (laminin subunit alpha 5)
Chlorocebus sabaeus (African green monkey) : LAMA5 (laminin subunit alpha 5)
Heterocephalus glaber (naked mole-rat) : Lama5 (laminin subunit alpha 5)
more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,315,008 - 46,351,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View


Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:16775009   PMID:22031290  


Genomics

Comparative Map Data
LAMA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,315,008 - 46,351,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
LAMA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2062,307,955 - 62,367,312 (-)EnsemblGRCh38hg38GRCh38
GRCh382062,309,060 - 62,367,318 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372060,884,116 - 60,942,368 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,317,516 - 60,375,763 (-)NCBINCBI36hg18NCBI36
Build 342060,317,515 - 60,375,763NCBI
Celera2057,619,270 - 57,677,579 (-)NCBI
Cytogenetic Map20q13.33NCBI
HuRef2057,659,916 - 57,715,071 (-)NCBIHuRef
CHM1_12060,784,876 - 60,843,394 (-)NCBICHM1_1
Lama5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,818,166 - 179,868,092 (-)NCBI
GRCm382180,176,373 - 180,225,904 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,176,373 - 180,225,859 (-)EnsemblGRCm38mm10GRCm38
MGSCv372179,911,078 - 179,960,564 (-)NCBIGRCm37mm9NCBIm37
MGSCv362180,105,781 - 180,155,267 (-)NCBImm8
Celera2184,258,583 - 184,308,017 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.7NCBI
Lama5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03175,553,042 - 175,601,112 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,553,045 - 175,601,127 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,517,512 - 181,565,641 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,233,897 - 169,282,410 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13169,144,153 - 169,145,258 (-)NCBI
Celera3165,261,840 - 165,309,879 (+)NCBICelera
Cytogenetic Map3q43NCBI
Lama5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,713,125 - 1,753,116 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,713,110 - 1,753,374 (+)NCBIChiLan1.0ChiLan1.0
LAMA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12059,991,859 - 60,052,486 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2059,992,130 - 60,055,765 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02058,673,850 - 58,677,760 (-)NCBI
Lama5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365149,928,234 - 9,973,425 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11761,698,370 - 61,747,795 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LAMA5
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl21,872,832 - 1,929,854 (+)Ensembl
ChlSab1.121,872,740 - 1,930,037 (+)NCBI
Lama5
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 4 1 14 3 6 12 8 10 5
Low 1 4 8 6 3 6 6 1
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: XM_005635367   ⟹   XP_005635424
RefSeq Status:
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12446,315,008 - 46,351,279 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005635424 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAS66666 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005635424   ⟸   XM_005635367
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012668 ENTREZGENE
Ensembl Transcript ENSCAFT00000020104 ENTREZGENE
NCBI Gene LAMA5 ENTREZGENE
UniGene Cfa.3920 ENTREZGENE

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.