Alkbh6 (alkB homolog 6) - Chinchilla Research Resource Database
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Gene: Alkbh6 (alkB homolog 6) Ictidomys tridecemlineatus
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Symbol: Alkbh6
Name: alkB homolog 6
CRRD ID: 12528059
Description: FOUND IN focal adhesion (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: alkB, alkylation repair homolog 6; alpha-ketoglutarate-dependent dioxygenase alkB homolog 6
Orthologs:
Homo sapiens (human) : ALKBH6 (alkB homolog 6)  HGNC  Alliance
Mus musculus (house mouse) : Alkbh6 (alkB homolog 6)  MGI  Alliance
Rattus norvegicus (Norway rat) : Alkbh6 (alkB homolog 6)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Alkbh6 (alkB homolog 6)
Pan paniscus (bonobo/pygmy chimpanzee) : ALKBH6 (alkB homolog 6)
Canis lupus familiaris (dog) : ALKBH6 (alkB homolog 6)
Sus scrofa (pig) : ALKBH6 (alkB homolog 6)
Chlorocebus sabaeus (African green monkey) : ALKBH6 (alkB homolog 6)
Heterocephalus glaber (naked mole-rat) : Alkbh6 (alkB homolog 6)
more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493692244,201 - 49,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Alkbh6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493692244,201 - 49,792 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ALKBH6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1936,009,120 - 36,014,239 (-)EnsemblGRCh38hg38GRCh38
GRCh381936,009,120 - 36,014,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371936,500,022 - 36,505,145 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361941,191,862 - 41,196,981 (-)NCBINCBI36hg18NCBI36
Celera1933,214,202 - 33,219,321 (-)NCBI
Cytogenetic Map19q13.12NCBI
HuRef1933,005,571 - 33,010,690 (-)NCBIHuRef
CHM1_11936,501,367 - 36,506,494 (-)NCBICHM1_1
Alkbh6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39730,008,178 - 30,013,728 (+)NCBI
GRCm38730,308,753 - 30,314,303 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl730,308,717 - 30,314,304 (+)EnsemblGRCm38mm10GRCm38
MGSCv37731,093,772 - 31,099,322 (+)NCBIGRCm37mm9NCBIm37
MGSCv36730,017,513 - 30,023,063 (+)NCBImm8
Celera724,904,872 - 24,910,436 (+)NCBICelera
Cytogenetic Map7B1NCBI
Alkbh6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0188,766,872 - 88,772,243 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl190,957,133 - 90,962,466 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0192,094,314 - 92,099,684 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4185,255,190 - 85,260,560 (+)NCBIRGSC3.4rn4RGSC3.4
Celera179,937,451 - 79,942,812 (+)NCBICelera
Cytogenetic Map1q21NCBI
Alkbh6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554682,575,568 - 2,582,032 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554682,575,469 - 2,580,632 (+)NCBIChiLan1.0ChiLan1.0
ALKBH6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11941,675,899 - 41,681,015 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1941,675,899 - 41,681,015 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01932,927,382 - 32,932,519 (-)NCBIMhudiblu_PPA_v0panPan3
ALKBH6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1116,670,841 - 116,680,515 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11116,671,147 - 116,676,784 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
ALKBH6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl645,384,957 - 45,390,244 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1645,384,955 - 45,390,247 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2640,787,631 - 40,792,954 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ALKBH6
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl630,920,185 - 30,925,362 (-)Ensembl
ChlSab1.1630,920,192 - 30,925,659 (-)NCBI
Alkbh6
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479410,271,107 - 10,281,055 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005341940   ⟹   XP_005341997
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692244,254 - 49,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013366014   ⟹   XP_013221468
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692244,254 - 49,660 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721211   ⟹   XP_021576886
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692244,408 - 49,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721212   ⟹   XP_021576887
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692244,254 - 49,780 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721213   ⟹   XP_021576888
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692244,201 - 49,779 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721214   ⟹   XP_021576889
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692244,789 - 49,779 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005341997   ⟸   XM_005341940
- UniProtKB: I3MDD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221468   ⟸   XM_013366014
- UniProtKB: I3MDD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576888   ⟸   XM_021721213
- Sequence:
RefSeq Acc Id: XP_021576887   ⟸   XM_021721212
- Sequence:
RefSeq Acc Id: XP_021576886   ⟸   XM_021721211
- Sequence:
RefSeq Acc Id: XP_021576889   ⟸   XM_021721214
- Sequence:
Protein Domains
Fe2OG dioxygenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009337 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008374 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000031555 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009331 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000037002 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.590 UniProtKB/TrEMBL
InterPro AlkB-like UniProtKB/TrEMBL
  AlkB-like_sf UniProtKB/TrEMBL
  ALKBH6 UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
NCBI Gene Alkbh6 ENTREZGENE
PANTHER PTHR46030 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_2 UniProtKB/TrEMBL
PROSITE FE2OG_OXY UniProtKB/TrEMBL
UniProt I3MDD0 ENTREZGENE, UniProtKB/TrEMBL