Cdk5rap3 (CDK5 regulatory subunit associated protein 3) - Chinchilla Research Resource Database
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Gene: Cdk5rap3 (CDK5 regulatory subunit associated protein 3) Ictidomys tridecemlineatus
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Symbol: Cdk5rap3
Name: CDK5 regulatory subunit associated protein 3
CRRD ID: 12531466
Description: ENCODES a protein that exhibits cyclin binding (ortholog); MDM2/MDM4 family protein binding (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN apoptotic nuclear changes (ortholog); cell population proliferation (ortholog); definitive erythrocyte differentiation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: CDK5 regulatory subunit-associated protein 3
Orthologs:
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649013,345,443 - 13,355,841 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



Cellular Component

References

Genomics

Comparative Map Data
Cdk5rap3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649013,345,443 - 13,355,841 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDK5RAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1747,967,810 - 47,981,781 (+)EnsemblGRCh38hg38GRCh38
GRCh381747,967,904 - 47,981,781 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371746,047,894 - 46,059,152 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361743,403,428 - 43,414,146 (+)NCBINCBI36hg18NCBI36
Build 341743,403,427 - 43,414,146NCBI
Celera1742,501,248 - 42,511,966 (+)NCBI
Cytogenetic Map17q21.32NCBI
HuRef1741,416,597 - 41,427,853 (+)NCBIHuRef
CHM1_11746,112,862 - 46,124,122 (+)NCBICHM1_1
Cdk5rap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391196,798,251 - 96,807,359 (-)NCBI
GRCm381196,907,425 - 96,916,531 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1196,907,426 - 96,916,496 (-)EnsemblGRCm38mm10GRCm38
MGSCv371196,769,100 - 96,777,795 (-)NCBIGRCm37mm9NCBIm37
MGSCv361196,723,876 - 96,732,571 (-)NCBImm8
Celera11106,553,602 - 106,563,974 (-)NCBICelera
Cytogenetic Map11DNCBI
Cdk5rap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01084,780,644 - 84,789,800 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1084,780,608 - 84,789,832 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01084,571,933 - 84,581,074 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1080,656,149 - 80,665,286 (-)NCBICelera
Cytogenetic Map10q31NCBI
Cdk5rap3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,120,761 - 13,170,073 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,160,811 - 13,170,012 (-)NCBIChiLan1.0ChiLan1.0
CDK5RAP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1179,738,144 - 9,748,989 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl179,738,141 - 9,749,302 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0179,556,313 - 9,567,099 (-)NCBI
CDK5RAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl924,276,768 - 24,286,272 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1924,276,660 - 24,286,273 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CDK5RAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1224,224,256 - 24,234,467 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11224,224,262 - 24,234,468 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21224,044,526 - 24,053,777 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDK5RAP3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1668,370,483 - 68,382,022 (+)Ensembl
ChlSab1.11668,367,591 - 68,382,000 (+)NCBI
Cdk5rap3
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005321733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01023216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005321733   ⟹   XP_005321790
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493649013,345,443 - 13,355,841 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005321790 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005321790   ⟸   XM_005321733
- UniProtKB: I3M7I7 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006244 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000005584 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006246 ENTREZGENE, UniProtKB/TrEMBL
InterPro CDK5RAP3 UniProtKB/TrEMBL
NCBI Gene Cdk5rap3 ENTREZGENE
PANTHER PTHR14894 UniProtKB/TrEMBL
Pfam DUF773 UniProtKB/TrEMBL
UniProt I3M7I7 ENTREZGENE, UniProtKB/TrEMBL

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.