Ube2k (ubiquitin conjugating enzyme E2 K) - Chinchilla Research Resource Database
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Gene: Ube2k (ubiquitin conjugating enzyme E2 K) Ictidomys tridecemlineatus
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Symbol: Ube2k
Name: ubiquitin conjugating enzyme E2 K
CRRD ID: 12566610
Description: ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN cellular response to interferon-beta (ortholog); free ubiquitin chain polymerization (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); FOUND IN cytoplasm (ortholog); filopodium tip (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ubiquitin-conjugating enzyme E2 K
Orthologs:
Homo sapiens (human) : UBE2K (ubiquitin conjugating enzyme E2 K)  HGNC  Alliance
Mus musculus (house mouse) : Ube2k (ubiquitin-conjugating enzyme E2K)  MGI  Alliance
Rattus norvegicus (Norway rat) : Ube2k (ubiquitin-conjugating enzyme E2K)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ube2k (ubiquitin conjugating enzyme E2 K)
Pan paniscus (bonobo/pygmy chimpanzee) : UBE2K (ubiquitin conjugating enzyme E2 K)
Canis lupus familiaris (dog) : UBE2K (ubiquitin conjugating enzyme E2 K)
Sus scrofa (pig) : UBE2K (ubiquitin conjugating enzyme E2 K)
Chlorocebus sabaeus (African green monkey) : UBE2K (ubiquitin conjugating enzyme E2 K)
Heterocephalus glaber (naked mole-rat) : Ube2k (ubiquitin conjugating enzyme E2 K)
more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364827,244,972 - 7,323,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ube2k
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364827,244,972 - 7,323,263 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
UBE2K
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl439,698,109 - 39,782,792 (+)EnsemblGRCh38hg38GRCh38
GRCh38439,698,136 - 39,782,792 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37439,699,664 - 39,784,412 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36439,376,266 - 39,457,977 (+)NCBINCBI36hg18NCBI36
Build 34439,522,436 - 39,604,148NCBI
Celera440,137,995 - 40,223,124 (+)NCBI
Cytogenetic Map4p14NCBI
HuRef439,024,547 - 39,109,580 (+)NCBIHuRef
CHM1_1439,699,339 - 39,784,070 (+)NCBICHM1_1
Ube2k
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39565,694,588 - 65,756,332 (+)NCBI
GRCm38565,537,245 - 65,598,989 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl565,537,233 - 65,598,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv37565,928,500 - 65,990,228 (+)NCBIGRCm37mm9NCBIm37
MGSCv36565,816,406 - 65,878,063 (+)NCBImm8
Celera562,815,933 - 62,878,205 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map533.72NCBI
Ube2k
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01444,289,247 - 44,348,691 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1444,289,247 - 44,348,691 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01444,108,859 - 44,168,755 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41445,349,287 - 45,411,823 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11445,354,342 - 45,414,183 (-)NCBI
Celera1441,809,022 - 41,869,333 (-)NCBICelera
Cytogenetic Map14p11NCBI
Ube2k
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554437,618,379 - 7,656,305 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554437,618,379 - 7,655,542 (-)NCBIChiLan1.0ChiLan1.0
UBE2K
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1439,877,966 - 39,960,402 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl439,877,966 - 39,960,397 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0434,026,942 - 34,111,923 (+)NCBI
UBE2K
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl372,717,236 - 72,780,210 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1372,713,035 - 72,780,199 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
UBE2K
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl830,887,829 - 30,963,762 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1830,887,784 - 30,961,685 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2832,580,147 - 32,654,102 (-)NCBISscrofa10.2Sscrofa10.2susScr3
UBE2K
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl2710,539,402 - 10,618,573 (-)Ensembl
ChlSab1.12710,535,091 - 10,618,659 (-)NCBI
Ube2k
(Heterocephalus glaber - naked mole-rat)
No map positions available.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005319928   ⟹   XP_005319985
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364827,244,972 - 7,323,263 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021722734   ⟹   XP_021578409
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364827,245,047 - 7,320,949 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319985 (Get FASTA)   NCBI Sequence Viewer  
  XP_021578409 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005319985   ⟸   XM_005319928
- Peptide Label: isoform X1
- UniProtKB: A0A287D018 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578409   ⟸   XM_021722734
- Peptide Label: isoform X2
- Sequence:
Protein Domains
UBA   UBC core


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000012447 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000011153 UniProtKB/TrEMBL
  ENSSTOP00000026907 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000029713 UniProtKB/TrEMBL
  ENSSTOP00000032189 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000012445 UniProtKB/TrEMBL
  ENSSTOT00000030304 UniProtKB/TrEMBL
  ENSSTOT00000032477 UniProtKB/TrEMBL
  ENSSTOT00000032685 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 3.10.110.10 UniProtKB/TrEMBL
InterPro UBA UniProtKB/TrEMBL
  UBA-like UniProtKB/TrEMBL
  UBE2K_UBA UniProtKB/TrEMBL
  UBQ-conjugat_E2 UniProtKB/TrEMBL
  UBQ-conjugating_AS UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
NCBI Gene Ube2k ENTREZGENE
Pfam UBA UniProtKB/TrEMBL
  UQ_con UniProtKB/TrEMBL
PROSITE UBA UniProtKB/TrEMBL
  UBIQUITIN_CONJUGAT_1 UniProtKB/TrEMBL
  UBIQUITIN_CONJUGAT_2 UniProtKB/TrEMBL
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54495 UniProtKB/TrEMBL
UniProt A0A287D018 ENTREZGENE, UniProtKB/TrEMBL
  A0A287D853_ICTTR UniProtKB/TrEMBL
  A0A287DF67_ICTTR UniProtKB/TrEMBL
  I3MJ62_ICTTR UniProtKB/TrEMBL

 



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.