Plod1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1) - Chinchilla Research Resource Database
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Gene: Plod1 (procollagen-lysine,2-oxoglutarate 5-dioxygenase 1) Ictidomys tridecemlineatus
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Symbol: Plod1
Name: procollagen-lysine,2-oxoglutarate 5-dioxygenase 1
CRRD ID: 12605803
Description: ENCODES a protein that exhibits ferrous iron binding (ortholog); L-ascorbic acid binding (ortholog); peptide binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); epidermis development (ortholog); peptidyl-lysine hydroxylation (ortholog); ASSOCIATED WITH alopecia (ortholog); Brain Small Vessel Disease 2 (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); FOUND IN catalytic complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Orthologs:
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936474740,582 - 763,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Plod1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936474740,582 - 763,294 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLOD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl111,934,205 - 11,975,538 (+)EnsemblGRCh38hg38GRCh38
GRCh38111,934,717 - 11,975,537 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37111,994,724 - 12,035,599 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,917,333 - 11,958,181 (+)NCBINCBI36hg18NCBI36
Build 34111,929,011 - 11,969,860NCBI
Celera111,108,411 - 11,149,258 (+)NCBI
Cytogenetic Map1p36.22NCBI
HuRef111,149,615 - 11,190,362 (+)NCBIHuRef
CHM1_1111,982,590 - 12,023,381 (+)NCBICHM1_1
Plod1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394147,994,210 - 148,021,233 (-)NCBI
GRCm384147,909,753 - 147,936,776 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4147,909,753 - 147,936,767 (-)EnsemblGRCm38mm10GRCm38
MGSCv374147,283,862 - 147,310,885 (-)NCBIGRCm37mm9NCBIm37
MGSCv364146,753,861 - 146,780,504 (-)NCBImm8
Celera4150,174,511 - 150,201,195 (-)NCBICelera
Cytogenetic Map4E1NCBI
cM Map478.57NCBI
Plod1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.05164,720,629 - 164,747,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5164,720,587 - 164,747,083 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05168,379,092 - 168,405,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45164,987,252 - 165,012,581 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.15164,997,439 - 165,022,772 (-)NCBI
Celera5156,623,980 - 156,649,807 (-)NCBICelera
Cytogenetic Map5q36NCBI
Plod1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554861,967,167 - 1,990,561 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554861,967,771 - 1,990,561 (-)NCBIChiLan1.0ChiLan1.0
PLOD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1111,900,881 - 11,941,308 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,900,881 - 11,941,308 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0110,684,608 - 10,725,376 (+)NCBIMhudiblu_PPA_v0panPan3
PLOD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl284,320,529 - 84,343,562 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1284,320,529 - 84,343,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
PLOD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl671,988,459 - 72,021,804 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1671,987,938 - 72,019,712 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2665,898,212 - 65,928,890 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PLOD1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120119,824,380 - 119,865,866 (-)NCBI
Plod1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248181,070,841 - 1,092,346 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_013362342   ⟹   XP_013217796
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936474746,379 - 763,294 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021733517   ⟹   XP_021589192
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936474740,582 - 763,294 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013217796 (Get FASTA)   NCBI Sequence Viewer  
  XP_021589192 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013217796   ⟸   XM_013362342
- Peptide Label: isoform X1
- UniProtKB: I3MEI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589192   ⟸   XM_021733517
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Fe2OG dioxygenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009927 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008907 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009929 ENTREZGENE, UniProtKB/TrEMBL
InterPro Nucleotide-diphossugar_trans UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/TrEMBL
  Procol_lys_dOase UniProtKB/TrEMBL
NCBI Gene Plod1 ENTREZGENE
Pfam 2OG-FeII_Oxy UniProtKB/TrEMBL
PROSITE FE2OG_OXY UniProtKB/TrEMBL
  LYS_HYDROXYLASE UniProtKB/TrEMBL
SMART P4Hc UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3MEI4 ENTREZGENE, UniProtKB/TrEMBL