P3h3 (prolyl 3-hydroxylase 3) - Chinchilla Research Resource Database
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Gene: P3h3 (prolyl 3-hydroxylase 3) Ictidomys tridecemlineatus
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Symbol: P3h3
Name: prolyl 3-hydroxylase 3
CRRD ID: 12644055
Description: INVOLVED IN collagen biosynthetic process (ortholog); negative regulation of cell population proliferation (ortholog); peptidyl-lysine hydroxylation (ortholog); ASSOCIATED WITH Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); infantile Refsum disease (ortholog); osteoarthritis (ortholog); FOUND IN catalytic complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: leprecan-like 2; Leprel2
Orthologs:
Homo sapiens (human) : P3H3 (prolyl 3-hydroxylase 3)  HGNC  Alliance
Mus musculus (house mouse) : P3h3 (prolyl 3-hydroxylase 3)  MGI  Alliance
Rattus norvegicus (Norway rat) : P3h3 (prolyl 3-hydroxylase 3)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : P3h3 (prolyl 3-hydroxylase 3)
Pan paniscus (bonobo/pygmy chimpanzee) : P3H3 (prolyl 3-hydroxylase 3)
Canis lupus familiaris (dog) : P3H3 (prolyl 3-hydroxylase 3)
Sus scrofa (pig) : P3H3 (prolyl 3-hydroxylase 3)
Chlorocebus sabaeus (African green monkey) : P3H3 (prolyl 3-hydroxylase 3)
Heterocephalus glaber (naked mole-rat) : P3h3 (prolyl 3-hydroxylase 3)
more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936709977,851 - 989,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
P3h3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936709977,851 - 989,949 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
P3H3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl126,828,407 - 6,839,847 (+)EnsemblGRCh38hg38GRCh38
GRCh38126,828,407 - 6,839,847 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37126,937,572 - 6,949,018 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,807,833 - 6,819,279 (+)NCBINCBI36hg18NCBI36
Build 34126,807,464 - 6,819,271NCBI
Celera128,554,854 - 8,566,302 (+)NCBI
Cytogenetic Map12p13.31NCBI
HuRef126,791,512 - 6,802,741 (+)NCBIHuRef
CHM1_1126,936,534 - 6,948,016 (+)NCBICHM1_1
P3h3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396124,818,052 - 124,834,680 (-)NCBI
GRCm386124,841,089 - 124,857,746 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6124,841,089 - 124,857,752 (-)EnsemblGRCm38mm10GRCm38
MGSCv376124,791,113 - 124,807,705 (-)NCBIGRCm37mm9NCBIm37
MGSCv366124,806,714 - 124,823,306 (-)NCBImm8
Celera6126,517,224 - 126,533,811 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map659.17NCBI
P3h3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04157,359,331 - 157,375,186 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,359,332 - 157,372,861 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,377,005 - 224,392,881 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44160,964,297 - 160,978,321 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14161,209,590 - 161,225,134 (-)NCBI
Celera4146,384,156 - 146,397,672 (-)NCBICelera
Cytogenetic Map4q42NCBI
P3h3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,429,633 - 4,440,256 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,429,558 - 4,440,602 (+)NCBIChiLan1.0ChiLan1.0
P3H3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1126,872,041 - 6,883,187 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,872,035 - 6,883,187 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0126,960,193 - 6,971,691 (+)NCBIMhudiblu_PPA_v0panPan3
P3H3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2738,182,856 - 38,194,902 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12738,182,642 - 38,195,173 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
P3H3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl563,871,508 - 63,884,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1563,871,506 - 63,885,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,307,000 - 66,319,718 (-)NCBISscrofa10.2Sscrofa10.2susScr3
P3H3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl116,860,891 - 6,872,549 (+)Ensembl
ChlSab1.1116,861,123 - 6,872,934 (+)NCBI
P3h3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248603,498,493 - 3,508,999 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005338322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01097466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005338322   ⟹   XP_005338379
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_004936709977,851 - 989,949 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005338379 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005338379   ⟸   XM_005338322
- Sequence:
Protein Domains
Fe2OG dioxygenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015582 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000013950 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015587 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
InterPro Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
  P3H UniProtKB/TrEMBL
  P3H3 UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/TrEMBL
  TPR-like_helical_dom_sf UniProtKB/TrEMBL
NCBI Gene P3h3 ENTREZGENE
PANTHER PTHR14049 UniProtKB/TrEMBL
  PTHR14049:SF14 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_3 UniProtKB/TrEMBL
PROSITE FE2OG_OXY UniProtKB/TrEMBL
SMART P4Hc UniProtKB/TrEMBL
UniProt I3MPZ9_ICTTR UniProtKB/TrEMBL