Ogfod3 (2-oxoglutarate and iron dependent oxygenase domain containing 3) - Chinchilla Research Resource Database
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Gene: Ogfod3 (2-oxoglutarate and iron dependent oxygenase domain containing 3) Ictidomys tridecemlineatus
Analyze
Symbol: Ogfod3
Name: 2-oxoglutarate and iron dependent oxygenase domain containing 3
CRRD ID: 12730914
Description:
Type: protein-coding
RefSeq Status: MODEL
Also known as: 2-oxoglutarate and iron-dependent oxygenase domain-containing protein 3
Orthologs:
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493692335,272 - 51,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Ogfod3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493692335,272 - 51,240 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OGFOD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1782,389,210 - 82,418,637 (-)EnsemblGRCh38hg38GRCh38
GRCh381782,389,210 - 82,418,637 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371780,347,086 - 80,376,513 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361777,943,389 - 77,969,751 (-)NCBINCBI36hg18NCBI36
Celera1776,938,858 - 76,965,271 (-)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1775,745,657 - 75,772,035 (-)NCBIHuRef
CHM1_11780,433,203 - 80,462,717 (-)NCBICHM1_1
Ogfod3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911121,068,419 - 121,095,474 (-)NCBI
GRCm3811121,177,593 - 121,204,648 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11121,177,591 - 121,204,711 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711121,038,907 - 121,065,962 (-)NCBIGRCm37mm9NCBIm37
MGSCv3611120,993,683 - 121,020,738 (-)NCBImm8
Celera11132,915,784 - 132,943,487 (-)NCBICelera
Cytogenetic Map11E2NCBI
Ogfod3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.010110,378,533 - 110,406,377 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10110,378,534 - 110,406,377 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010109,965,250 - 109,993,035 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410110,409,024 - 110,436,809 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.110110,423,528 - 110,451,313 (-)NCBI
Celera10104,990,920 - 105,018,520 (-)NCBICelera
Cytogenetic Map10q32.3NCBI
Ogfod3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955506719,873 - 745,036 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955506719,746 - 744,983 (+)NCBIChiLan1.0ChiLan1.0
OGFOD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11782,611,177 - 82,636,729 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1782,611,177 - 82,636,729 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01776,803,623 - 76,829,953 (-)NCBIMhudiblu_PPA_v0panPan3
OGFOD3
(Canis lupus familiaris - dog)
No map positions available.
OGFOD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.112677,146 - 688,195 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21232,842 - 44,191 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OGFOD3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1 Ensembl1674,303,756 - 74,338,815 (-)Ensembl
ChlSab1.11674,304,837 - 74,337,948 (-)NCBI
Ogfod3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462480111,159,113 - 11,192,613 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005341976   ⟹   XP_005342033
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_00493692335,272 - 51,240 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005342033 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005342033   ⟸   XM_005341976
- Sequence:
Protein Domains
Fe2OG dioxygenase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003877 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000003468 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003868 ENTREZGENE, UniProtKB/TrEMBL
InterPro OGFOD3 UniProtKB/TrEMBL
  Oxoglu/Fe-dep_dioxygenase UniProtKB/TrEMBL
  Pro_4_hyd_alph UniProtKB/TrEMBL
NCBI Gene Ogfod3 ENTREZGENE
PANTHER PTHR14650 UniProtKB/TrEMBL
Pfam 2OG-FeII_Oxy_3 UniProtKB/TrEMBL
PROSITE FE2OG_OXY UniProtKB/TrEMBL
SMART P4Hc UniProtKB/TrEMBL
UniProt I3M359_ICTTR UniProtKB/TrEMBL