Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Phf23 (PHD finger protein 23) Rattus norvegicus
Analyze
Symbol: Phf23
Name: PHD finger protein 23
CRRD ID: 1302969
Description: Predicted to have metal ion binding activity. Predicted to be involved in negative regulation of autophagosome assembly; negative regulation of autophagosome maturation; and positive regulation of protein ubiquitination. Predicted to localize to nucleoplasm. Orthologous to human PHF23 (PHD finger protein 23); INTERACTS WITH bisphenol A; flutamide; Soman.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: MGC94192; PDH-containing protein JUNE-1; PHD zinc finger containing protein JUNE1; similar to PHD zinc finger containing protein JUNE1
Orthologs:
Homo sapiens (human) : PHF23 (PHD finger protein 23)  HGNC  Alliance
Mus musculus (house mouse) : Phf23 (PHD finger protein 23)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Phf23 (PHD finger protein 23)
Pan paniscus (bonobo/pygmy chimpanzee) : PHF23 (PHD finger protein 23)
Canis lupus familiaris (dog) : PHF23 (PHD finger protein 23)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Phf23 (PHD finger protein 23)
Sus scrofa (pig) : PHF23 (PHD finger protein 23)
Chlorocebus sabaeus (African green monkey) : PHF23 (PHD finger protein 23)
Heterocephalus glaber (naked mole-rat) : Phf23 (PHD finger protein 23)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01056,605,078 - 56,609,236 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1056,605,140 - 56,609,233 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01056,350,190 - 56,354,355 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41056,841,624 - 56,846,146 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11056,855,246 - 56,859,768 (+)NCBI
Celera1053,872,270 - 53,876,378 (+)NCBICelera
Cytogenetic Map10q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Phf23
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1302969
Created: 2004-12-03
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.