Ablim2 (actin binding LIM protein family, member 2) - Chinchilla Research Resource Database
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Gene: Ablim2 (actin binding LIM protein family, member 2) Rattus norvegicus
Analyze
Symbol: Ablim2
Name: actin binding LIM protein family, member 2
CRRD ID: 1303094
Description: Predicted to have actin filament binding activity. Predicted to be involved in lamellipodium assembly and positive regulation of transcription by RNA polymerase II. Predicted to localize to actin cytoskeleton and myofibril. Orthologous to human ABLIM2 (actin binding LIM protein family member 2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: abLIM-2; actin-binding LIM protein 2; actin-binding LIM protein family member 2
Orthologs:
Homo sapiens (human) : ABLIM2 (actin binding LIM protein family member 2)  HGNC  Alliance
Mus musculus (house mouse) : Ablim2 (actin-binding LIM protein 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Ablim2 (actin binding LIM protein family member 2)
Pan paniscus (bonobo/pygmy chimpanzee) : ABLIM2 (actin binding LIM protein family member 2)
Canis lupus familiaris (dog) : ABLIM2 (actin binding LIM protein family member 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Ablim2 (actin binding LIM protein family member 2)
Sus scrofa (pig) : ABLIM2 (actin binding LIM protein family member 2)
Chlorocebus sabaeus (African green monkey) : ABLIM2 (actin binding LIM protein family member 2)
Heterocephalus glaber (naked mole-rat) : Ablim2 (actin binding LIM protein family member 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01480,044,217 - 80,169,491 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,675,672 - 79,799,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,499,878 - 80,624,108 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11480,502,268 - 80,626,499 (-)NCBI
Celera1473,798,130 - 73,922,188 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
High Myopia  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
actin cytoskeleton  (IBA,IEA,ISO)
cytoplasm  (IEA)
myofibril  (ISO)

Molecular Function

References

Additional References at PubMed
PMID:16005990   PMID:17194709   PMID:29476059  


Genomics

Comparative Map Data
Ablim2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01480,044,217 - 80,169,491 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01479,675,672 - 79,799,079 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41480,499,878 - 80,624,108 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11480,502,268 - 80,626,499 (-)NCBI
Celera1473,798,130 - 73,922,188 (-)NCBICelera
Cytogenetic Map14q21NCBI
ABLIM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl47,965,310 - 8,158,832 (-)EnsemblGRCh38hg38GRCh38
GRCh3847,965,312 - 8,158,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3747,967,037 - 8,160,559 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3648,017,938 - 8,211,459 (-)NCBINCBI36hg18NCBI36
Build 3448,085,111 - 8,278,609NCBI
Celera47,868,198 - 8,052,469 (-)NCBI
Cytogenetic Map4p16.1NCBI
HuRef47,888,374 - 8,079,979 (-)NCBIHuRef
CHM1_147,965,064 - 8,158,514 (-)NCBICHM1_1
Ablim2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,915,200 - 36,042,323 (+)NCBI
GRCm38535,757,855 - 35,884,979 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,757,880 - 35,884,973 (+)EnsemblGRCm38mm10GRCm38
MGSCv37536,100,529 - 36,227,628 (+)NCBIGRCm37mm9NCBIm37
MGSCv36536,074,792 - 36,201,831 (+)NCBImm8
Celera533,231,426 - 33,358,448 (+)NCBICelera
Cytogenetic Map5B3NCBI
Ablim2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555142,800,802 - 2,919,978 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555142,800,758 - 2,920,926 (+)NCBIChiLan1.0ChiLan1.0
ABLIM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.148,029,394 - 8,225,050 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl48,031,074 - 8,224,912 (-)Ensemblpanpan1.1panPan2
ABLIM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl359,838,934 - 59,986,723 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1359,838,929 - 59,980,971 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ablim2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647719,426,962 - 19,562,608 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABLIM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl82,916,788 - 3,054,966 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.182,948,948 - 3,054,974 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.284,172,649 - 4,301,272 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABLIM2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12743,916,680 - 44,108,157 (-)NCBI
Ablim2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475523,778,298 - 23,891,476 (-)NCBI

Position Markers
RH133082  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01480,044,740 - 80,044,935NCBIRnor6.0
Rnor_5.01479,676,195 - 79,676,390UniSTSRnor5.0
RGSC_v3.41480,499,540 - 80,499,735UniSTSRGSC3.4
Celera1473,797,792 - 73,797,987UniSTS
Cytogenetic Map14q21UniSTS
BF391064  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01480,070,858 - 80,071,009NCBIRnor6.0
Rnor_5.01479,701,914 - 79,702,065UniSTSRnor5.0
RGSC_v3.41480,525,904 - 80,526,055UniSTSRGSC3.4
Celera1473,823,959 - 73,824,110UniSTS
Cytogenetic Map14q21UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
CRRD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143259392686191589Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)144031561085315610Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)144031561085315610Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)144031561085315610Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)144031561085315610Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)144163756980841518Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1442442731108833671Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1443910761105074364Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1451818462105074364Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1460980905105980905Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1460980905105980905Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)146187332388870994Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1461993178106993178Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1463548095108548095Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147339146788870994Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1478172765102549388Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)1478172765102549388Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1478172765102549388Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1478172765102549388Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1478172765106641756Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1478446303110402569Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1480049285115493446Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1480049285115493446Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:619
Count of miRNA genes:243
Interacting mature miRNAs:309
Transcripts:ENSRNOT00000010482, ENSRNOT00000058315
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 8 11 46 1 8
Low 3 33 33 17 19 17 22 23 26 11
Below cutoff 10 24 24 24 6 12 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001001514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AABR07015843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07015844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AABR07072411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01080718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AAHX01080719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC118993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ703892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ703893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000010482   ⟹   ENSRNOP00000010482
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1480,045,766 - 80,130,139 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000058315   ⟹   ENSRNOP00000055116
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1480,045,078 - 80,169,472 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079769   ⟹   ENSRNOP00000068643
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1480,056,269 - 80,169,431 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091652   ⟹   ENSRNOP00000070221
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1480,045,766 - 80,130,139 (-)Ensembl
RefSeq Acc Id: NM_001001514   ⟹   NP_001001514
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,045,078 - 80,169,472 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
RGSC_v3.41480,499,878 - 80,624,108 (-)RGD
Celera1473,798,130 - 73,922,188 (-)RGD
Sequence:
RefSeq Acc Id: NM_001177695   ⟹   NP_001171166
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,045,078 - 80,169,472 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
Celera1473,798,130 - 73,922,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251135   ⟹   XP_006251197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,573 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251137   ⟹   XP_006251199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,572 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251138   ⟹   XP_006251200
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,570 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251139   ⟹   XP_006251201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,571 (-)NCBI
Rnor_5.01479,675,672 - 79,799,079 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770328   ⟹   XP_008768550
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008770329   ⟹   XP_008768551
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599298   ⟹   XP_017454787
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599299   ⟹   XP_017454788
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,169,491 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599300   ⟹   XP_017454789
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599301   ⟹   XP_017454790
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599302   ⟹   XP_017454791
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599303   ⟹   XP_017454792
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599304   ⟹   XP_017454793
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599305   ⟹   XP_017454794
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,575 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599306   ⟹   XP_017454795
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,576 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599307   ⟹   XP_017454796
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599308   ⟹   XP_017454797
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599309   ⟹   XP_017454798
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599310   ⟹   XP_017454799
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,574 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599311   ⟹   XP_017454800
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599312   ⟹   XP_017454801
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,571 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599313   ⟹   XP_017454802
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,570 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599314   ⟹   XP_017454803
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,044,217 - 80,142,573 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001001514 (Get FASTA)   NCBI Sequence Viewer  
  NP_001171166 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251197 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251199 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251200 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251201 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768550 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768551 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454787 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454788 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454789 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454790 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454791 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454792 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454793 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454794 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454795 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454796 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454797 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454798 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454799 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454800 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454801 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454802 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454803 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAG28314 (Get FASTA)   NCBI Sequence Viewer  
  CAG28315 (Get FASTA)   NCBI Sequence Viewer  
  Q6KC51 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001001514   ⟸   NM_001001514
- Peptide Label: isoform b
- UniProtKB: Q6KC51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171166   ⟸   NM_001177695
- Peptide Label: isoform a
- UniProtKB: Q6KC51 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006251201   ⟸   XM_006251139
- Peptide Label: isoform X20
- Sequence:
RefSeq Acc Id: XP_006251197   ⟸   XM_006251135
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006251199   ⟸   XM_006251137
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_006251200   ⟸   XM_006251138
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_008768550   ⟸   XM_008770328
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008768551   ⟸   XM_008770329
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_017454788   ⟸   XM_017599299
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017454787   ⟸   XM_017599298
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017454789   ⟸   XM_017599300
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454795   ⟸   XM_017599306
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_017454792   ⟸   XM_017599303
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_017454790   ⟸   XM_017599301
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017454794   ⟸   XM_017599305
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017454793   ⟸   XM_017599304
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_017454799   ⟸   XM_017599310
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_017454791   ⟸   XM_017599302
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017454803   ⟸   XM_017599314
- Peptide Label: isoform X23
- Sequence:
RefSeq Acc Id: XP_017454800   ⟸   XM_017599311
- Peptide Label: isoform X19
- Sequence:
RefSeq Acc Id: XP_017454797   ⟸   XM_017599308
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017454801   ⟸   XM_017599312
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_017454796   ⟸   XM_017599307
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_017454798   ⟸   XM_017599309
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017454802   ⟸   XM_017599313
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: ENSRNOP00000068643   ⟸   ENSRNOT00000079769
RefSeq Acc Id: ENSRNOP00000010482   ⟸   ENSRNOT00000010482
RefSeq Acc Id: ENSRNOP00000055116   ⟸   ENSRNOT00000058315
RefSeq Acc Id: ENSRNOP00000070221   ⟸   ENSRNOT00000091652
Protein Domains
HP   LIM zinc-binding

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699394
Promoter ID:EPDNEW_R9912
Type:single initiation site
Name:Ablim2_1
Description:actin binding LIM protein family, member 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01480,169,463 - 80,169,523EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 79702875 79702876 T A snv DOB/Oda (KyushuU), IS-Tlk/Kyo (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303094 AgrOrtholog
Ensembl Genes ENSRNOG00000007882 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000010482 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000055116 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000068643 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070221 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010482 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000058315 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000079769 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000091652 UniProtKB/TrEMBL
Gene3D-CATH 1.10.950.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ABLIM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AbLIM_anchor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Villin_headpiece UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Villin_headpiece_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:360958 UniProtKB/Swiss-Prot
NCBI Gene 360958 ENTREZGENE
PANTHER PTHR24213:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam AbLIM_anchor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ablim2 PhenoGen
PROSITE LIM_DOMAIN_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PS51089 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART LIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VHP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47050 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Rn.131797 ENTREZGENE
UniProt A0A0G2JTB5_RAT UniProtKB/TrEMBL
  A0A0G2JXC7_RAT UniProtKB/TrEMBL
  A0A0H2UHF9_RAT UniProtKB/TrEMBL
  A0A140TAH7_RAT UniProtKB/TrEMBL
  ABLM2_RAT UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary Q6KC50 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-11-01 Ablim2  actin-binding LIM protein 2  Ablim2  actin binding LIM protein family, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-08-29 Ablim2  actin binding LIM protein family, member 2  Ablim2  actin-binding LIM protein 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Ablim2  actin-binding LIM protein 2      Symbol and Name status set to approved 1299863 APPROVED
2005-02-14 Ablim2  actin-binding LIM protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL