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Gene: Phf1 (PHD finger protein 1) Rattus norvegicus
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Symbol: Phf1
Name: PHD finger protein 1
Description: Exhibits chromatin binding activity. Predicted to contribute to nucleosome binding activity. Predicted to be involved in cellular response to DNA damage stimulus; positive regulation of transcription, DNA-templated; and regulation of histone H3-K27 methylation. Localizes to the nucleus. Predicted to colocalize with the ESC/E(Z) complex and centrosome. Orthologous to human PHF1 (PHD finger protein 1); PARTICIPATES IN histone modification pathway; INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: MGC94975; polycomb-like 1; T-complex testis-expressed 3; Tctex3
Orthologs:
Homo sapiens (human) : PHF1 (PHD finger protein 1)  HGNC  Alliance
Mus musculus (house mouse) : Phf1 (PHD finger protein 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Phf1 (PHD finger protein 1)
Pan paniscus (bonobo/pygmy chimpanzee) : PHF1 (PHD finger protein 1)
Canis lupus familiaris (dog) : PHF1 (PHD finger protein 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Phf1 (PHD finger protein 1)
Sus scrofa (pig) : PHF1 (PHD finger protein 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0205,526,926 - 5,531,940 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0207,585,909 - 7,590,953 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4205,170,270 - 5,175,027 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1205,170,496 - 5,175,254 (+)NCBI
Celera206,600,534 - 6,605,292 (+)NCBICelera
Cytogenetic Map20p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Phf1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1303205
Created: 2004-12-03
Species: Rattus norvegicus
Last Modified: 2019-04-23
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.