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Gene: Trim5 (tripartite motif-containing 5) Rattus norvegicus
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Symbol: Trim5
Name: tripartite motif-containing 5
Description: Predicted to have several functions, including protein binding activity, bridging; protein homodimerization activity; and signaling pattern recognition receptor activity. Predicted to be involved in several processes, including autophagy; negative regulation of viral life cycle; and regulation of signal transduction. Predicted to colocalize with the omegasome. Orthologous to human TRIM5 (tripartite motif containing 5); INTERACTS WITH (+)-schisandrin B; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: hypothetical protein LOC308906; LOC308906; RGD1304579; similar to 9230105E10Rik protein; tripartite motif-containing protein 5
Orthologs:
Homo sapiens (human) : TRIM5 (tripartite motif containing 5)  HGNC  Alliance
Mus musculus (house mouse) : Trim5 (tripartite motif-containing 5)  MGI  Alliance
Pan paniscus (bonobo/pygmy chimpanzee) : TRIM5 (tripartite motif containing 5)
Sus scrofa (pig) : LOC733579 (tripartite motif protein TRIM5)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01169,446,774 - 169,463,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01175,586,814 - 175,603,800 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41162,096,439 - 162,113,409 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11162,190,323 - 162,207,293 (-)NCBI
Celera1156,710,957 - 156,727,926 (-)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Trim5
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

CRRD Object Information
CRRD ID: 1304579
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.